UHGV-0101873

Genome information

Genome length 43,259 bps

CDS count 64

Completeness 96.88% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101873
vOTU ID	vOTU-013964
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_206000
BioSample	SAMEA3449347
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.88% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.41
Jumbo phage	No

Genome content
Genome length	43,259 bps
GC content	44.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.75%
Average CDS length	609.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101873_1	PHROG	phrog_27545	NA	unknown function
UHGV-0101873_1	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0101873_1	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0101873_1	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0101873_3	Structural annotation	PF02973	NA	NA
UHGV-0101873_4	Structural annotation	PF10651, NF009453	NA	NA
UHGV-0101873_6	PHROG	phrog_6616	tail protein	tail
UHGV-0101873_6	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0101873_6	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-0101873_6	COG	COG4926	Phage-related protein	NA
UHGV-0101873_6	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0101873_7	PHROG	phrog_1194	NA	unknown function
UHGV-0101873_7	UniRef90	UniRef90_A0A0R1VMM5	NA	NA
UHGV-0101873_7	eggNOG-mapper	60520.HR47_13415	NA	NA
UHGV-0101873_7	Pfam	PF20458	NA	DUF6711
UHGV-0101873_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0101873_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0101873_8	eggNOG-mapper	445971.ANASTE_00086	phage tail tape measure protein	NA
UHGV-0101873_8	COG	COG5412	Phage-related protein	NA
UHGV-0101873_9	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0101873_10	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0101873_10	eggNOG-mapper	1211844.CBLM010000023_gene988	NA	NA
UHGV-0101873_10	Pfam	PF16478	NA	DUF5055
UHGV-0101873_10	Structural annotation	PF16478	NA	NA
UHGV-0101873_11	PHROG	phrog_158	major tail protein	tail
UHGV-0101873_11	UniRef90	UniRef90_UPI00189AB4AD	phage tail protein	NA
UHGV-0101873_11	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-0101873_11	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0101873_12	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0101873_13	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0101873_14	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0101873_15	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0101873_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0101873_15	Structural annotation	TIGR01560	NA	NA
UHGV-0101873_16	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0101873_16	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0101873_16	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0101873_16	Pfam	PF17236	NA	DUF5309
UHGV-0101873_16	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0101873_18	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0101873_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0101873_19	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0101873_19	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0101873_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0101873_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0101873_20	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0101873_20	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0101873_20	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0101873_20	COG	COG5410	NA	NA
UHGV-0101873_20	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0101873_21	PHROG	phrog_1233	NA	unknown function
UHGV-0101873_21	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0101873_21	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0101873_24	PHROG	phrog_30113	NA	unknown function
UHGV-0101873_24	UniRef90	UniRef90_UPI001AD7ECDF	NA	NA
UHGV-0101873_24	eggNOG-mapper	1293597.BN147_08765	NA	NA
UHGV-0101873_24	Pfam	PF12686	NA	DUF3800
UHGV-0101873_24	Structural annotation	PF01351, MF_00052_A, TIGR00729, COG1039	NA	NA
UHGV-0101873_25	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0101873_25	PHROG	phrog_95	integrase	integration and excision
UHGV-0101873_25	UniRef90	UniRef90_A0A318XRA1	Site-specific DNA recombinase	NA
UHGV-0101873_25	eggNOG-mapper	1203606.HMPREF1526_00251	Resolvase, N terminal domain	NA
UHGV-0101873_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0101873_25	Pfam	PF07508	Recombinase	Recombinase
UHGV-0101873_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0101873_25	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0101873_26	PHROG	phrog_4534	NA	unknown function
UHGV-0101873_28	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0101873_28	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0101873_28	UniRef90	UniRef90_A0A1C5UE43	Stage III sporulation protein E	NA
UHGV-0101873_28	eggNOG-mapper	1340493.JNIF01000003_gene2347	PFAM cell divisionFtsK SpoIIIE	NA
UHGV-0101873_28	PADLOC	SspH_00004	SspH	SSP
UHGV-0101873_28	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0101873_28	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0101873_28	Structural annotation	PF01580, MF_00350, TIGR03925, COG0433	NA	NA
UHGV-0101873_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0101873_29	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0101873_29	eggNOG-mapper	485915.Dret_1613	DNA-packaging protein gp3	NA
UHGV-0101873_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0101873_29	Structural annotation	PF16677	NA	NA
UHGV-0101873_30	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0101873_30	UniRef90	UniRef90_A0A090HW23	SF3 helicase domain-containing protein	NA
UHGV-0101873_30	eggNOG-mapper	862517.HMPREF9225_1259	Phage plasmid primase, P4 family	NA
UHGV-0101873_30	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0101873_30	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0101873_30	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0101873_30	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0101873_30	Structural annotation	PF08706, PF05272, PF02257, MF_00016, NF005477, COG3378	NA	NA
UHGV-0101873_34	PHROG	phrog_8684	NA	unknown function
UHGV-0101873_34	UniRef90	UniRef90_A0A3D4KYC5	YopX domain-containing protein	NA
UHGV-0101873_34	eggNOG-mapper	1235799.C818_02660	YopX protein	NA
UHGV-0101873_34	Pfam	PF09643	YopX protein	YopX
UHGV-0101873_34	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0101873_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0101873_35	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0101873_40	PHROG	phrog_6721	NA	unknown function
UHGV-0101873_40	UniRef90	UniRef90_A0A373Q5P7	HNHc domain-containing protein	NA
UHGV-0101873_40	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0101873_40	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0101873_40	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0101873_40	Structural annotation	PF02796, PF07463, TIGR02170	NA	NA
UHGV-0101873_42	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0101873_42	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0101873_42	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0101873_43	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0101873_43	UniRef90	UniRef90_H1CER3	PriCT_1 domain-containing protein	NA
UHGV-0101873_43	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0101873_43	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0101873_43	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0101873_43	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0101873_45	PHROG	phrog_18716	NA	unknown function
UHGV-0101873_45	UniRef90	UniRef90_A0A7X7HJW5	NA	NA
UHGV-0101873_45	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-0101873_45	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0101873_46	Structural annotation	PF05037, NF005674	NA	NA
UHGV-0101873_47	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101873_47	UniRef90	UniRef90_H1CES3	YqaJ domain-containing protein	NA
UHGV-0101873_47	eggNOG-mapper	1121866.AUGK01000003_gene1405	YqaJ viral recombinase family	NA
UHGV-0101873_47	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0101873_47	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0101873_47	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0101873_48	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0101873_49	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0101873_49	UniRef90	UniRef90_D7GQK5	ERF superfamily	NA
UHGV-0101873_49	Pfam	PF04404	ERF superfamily	ERF
UHGV-0101873_49	Structural annotation	PF04404	NA	NA
UHGV-0101873_50	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0101873_50	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0101873_50	UniRef90	UniRef90_UPI00189DB5D1	DNA polymerase elongation subunit (family B)	NA
UHGV-0101873_50	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0101873_50	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0101873_50	Structural annotation	PF08490, MF_04010, NF004416, COG0417	NA	NA
UHGV-0101873_51	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101873_51	eggNOG-mapper	742767.HMPREF9456_02044	NA	NA
UHGV-0101873_52	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0101873_52	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0101873_52	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0101873_53	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0101873_53	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0101873_53	UniRef90	UniRef90_R6P528	DNA or RNA helicases of superfamily II	NA
UHGV-0101873_53	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-0101873_53	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0101873_53	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0101873_53	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0101873_53	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0101873_53	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0101873_54	KOfam	K03552	hjr; holliday junction resolvase Hjr [EC:3.1.21.10]	NA
UHGV-0101873_54	UniRef90	UniRef90_D7GXC2	Archaeal holliday junction resolvase (Hjc)	NA
UHGV-0101873_54	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-0101873_54	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0101873_54	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-0101873_57	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0101873_57	PHROG	phrog_923	NA	unknown function
UHGV-0101873_57	UniRef90	UniRef90_UPI0009F73A1A	pentapeptide repeat-containing protein	NA
UHGV-0101873_57	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-0101873_57	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0101873_57	COG	COG1357	NA	NA
UHGV-0101873_57	Structural annotation	PF13599, PF18350, MF_01354, NF000420, COG4873	NA	NA
UHGV-0101873_58	PHROG	phrog_6058	NA	unknown function
UHGV-0101873_58	UniRef90	UniRef90_UPI000D0EB5B4	DNA-binding protein	NA
UHGV-0101873_58	eggNOG-mapper	1460635.JCM19038_3443	NA	NA
UHGV-0101873_58	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0101873_59	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0101873_59	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0101873_59	UniRef90	UniRef90_A0A1C5P786	Phage anti-repressor protein	NA
UHGV-0101873_59	eggNOG-mapper	1414720.CBYM010000005_gene1349	Phage antirepressor protein KilAC domain	NA
UHGV-0101873_59	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0101873_59	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0101873_59	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0101873_59	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0101873_62	UniRef90	UniRef90_A0A1C5TSF7	HTH cro/C1-type domain-containing protein	NA
UHGV-0101873_62	Pfam	PF05339	NA	DUF739
UHGV-0101873_62	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0101873_63	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0101873_63	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0101873_63	UniRef90	UniRef90_R6IAR6	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	NA
UHGV-0101873_63	eggNOG-mapper	1033744.CAEL01000029_gene1309	Peptidase S24-like	NA
UHGV-0101873_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101873_63	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0101873_63	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0101873_63	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0101873_64	KOfam	K14059	int; integrase	NA
UHGV-0101873_64	PHROG	phrog_1	integrase	integration and excision
UHGV-0101873_64	UniRef90	UniRef90_UPI000D0ECE9F	site-specific integrase	NA
UHGV-0101873_64	eggNOG-mapper	411471.SUBVAR_04379	Belongs to the 'phage' integrase family	NA
UHGV-0101873_64	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0101873_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101873_64	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0101873_64	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA