UHGV-0101874

Genome information

Genome length 41,189 bps

CDS count 60

Completeness 85.49% (medium-quality)

geNomad score 0.9578

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101874
vOTU ID	vOTU-042384
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_206001
BioSample	SAMEA3449347
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9578
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.16
Jumbo phage	No

Genome content
Genome length	41,189 bps
GC content	37.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.50%
Average CDS length	624.85 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101874_1	KOfam	K04486	E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]	NA
UHGV-0101874_1	UniRef90	UniRef90_R7BE08	Histidinol-phosphatase	NA
UHGV-0101874_1	eggNOG-mapper	1410650.JHWL01000009_gene1891	Histidinol phosphate phosphatase, HisJ family	NA
UHGV-0101874_1	Pfam	PF02811	PHP domain	PHP
UHGV-0101874_1	COG	COG1387	Histidinol phosphatase or related hydrolase of the PHP family	NA
UHGV-0101874_2	KOfam	K14059	int; integrase	NA
UHGV-0101874_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0101874_2	UniRef90	UniRef90_UPI001897E1C8	site-specific integrase	NA
UHGV-0101874_2	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0101874_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0101874_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101874_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0101874_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0101874_4	PHROG	phrog_28892	NA	unknown function
UHGV-0101874_4	UniRef90	UniRef90_B1V2Q3	Putative lipoprotein	NA
UHGV-0101874_4	eggNOG-mapper	1235799.C818_04185	NA	NA
UHGV-0101874_5	PHROG	phrog_1914	NA	unknown function
UHGV-0101874_5	UniRef90	UniRef90_A0A355V1W2	Peptidase_M78 domain-containing protein	NA
UHGV-0101874_5	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0101874_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0101874_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0101874_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0101874_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0101874_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101874_6	UniRef90	UniRef90_A0A2V2FME6	Transcriptional regulator	NA
UHGV-0101874_6	eggNOG-mapper	1410650.JHWL01000003_gene2857	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0101874_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101874_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101874_6	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0101874_7	UniRef90	UniRef90_R5L0Y8	HTH cro/C1-type domain-containing protein	NA
UHGV-0101874_7	eggNOG-mapper	1123263.AUKY01000076_gene1780	NA	NA
UHGV-0101874_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0101874_10	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0101874_10	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0101874_12	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0101874_12	UniRef90	UniRef90_R6ISF1	NA	NA
UHGV-0101874_12	eggNOG-mapper	1029823.AFIE01000007_gene1906	NA	NA
UHGV-0101874_12	Pfam	PF06356	NA	DUF1064
UHGV-0101874_12	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0101874_13	PHROG	phrog_24518	NA	unknown function
UHGV-0101874_13	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0101874_14	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0101874_15	PHROG	phrog_8470	NA	unknown function
UHGV-0101874_15	UniRef90	UniRef90_A0A238ZSA1	PcfJ-like protein	NA
UHGV-0101874_15	eggNOG-mapper	742740.HMPREF9474_03121	PcfJ-like protein	NA
UHGV-0101874_15	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0101874_15	Structural annotation	PF14284	NA	NA
UHGV-0101874_16	PHROG	phrog_15609	NA	unknown function
UHGV-0101874_16	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0101874_16	Pfam	PF11300	NA	DUF3102
UHGV-0101874_16	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0101874_17	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0101874_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0101874_17	UniRef90	UniRef90_R6RCD0	Putative phosphoadenosine phosphosulfate reductase	NA
UHGV-0101874_17	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0101874_17	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0101874_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0101874_17	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0101874_18	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0101874_18	UniRef90	UniRef90_A0A3D4CBP5	NA	NA
UHGV-0101874_18	eggNOG-mapper	226185.EF_2118	NA	NA
UHGV-0101874_18	Pfam	PF12961	NA	DUF3850
UHGV-0101874_18	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0101874_20	PHROG	phrog_10714	NA	unknown function
UHGV-0101874_22	PHROG	phrog_31463	NA	unknown function
UHGV-0101874_22	UniRef90	UniRef90_UPI001160B515	LemA family protein	NA
UHGV-0101874_23	PHROG	phrog_10714	NA	unknown function
UHGV-0101874_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101874_25	UniRef90	UniRef90_A0A7U9S1Q6	Sigma70_r4_2 domain-containing protein	NA
UHGV-0101874_25	eggNOG-mapper	478749.BRYFOR_07530	NA	NA
UHGV-0101874_25	Structural annotation	PF07374, MF_00245, TIGR02984, COG2739	NA	NA
UHGV-0101874_26	KOfam	K04078	groES, HSPE1; chaperonin GroES	NA
UHGV-0101874_26	PHROG	phrog_3188	co-chaperonin GroES	other
UHGV-0101874_26	UniRef90	UniRef90_UPI000C06CB4D	co-chaperone GroES	NA
UHGV-0101874_26	eggNOG-mapper	760011.Spico_0631	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	NA
UHGV-0101874_26	Pfam	PF00166	Chaperonin 10 Kd subunit	Cpn10
UHGV-0101874_26	COG	COG0234	Co-chaperonin GroES (HSP10)	NA
UHGV-0101874_26	Structural annotation	PF00166, MF_00580, NF001531, COG0234	NA	NA
UHGV-0101874_29	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0101874_29	UniRef90	UniRef90_E5VKE3	SLIT-ROBO Rho GTPase-activating protein 3	NA
UHGV-0101874_29	eggNOG-mapper	1235835.C814_01177	NA	NA
UHGV-0101874_29	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0101874_29	Structural annotation	PF07471, TIGR01764, COG4220	NA	NA
UHGV-0101874_30	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0101874_30	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0101874_30	UniRef90	UniRef90_A0A3D5LV46	Terminase	NA
UHGV-0101874_30	eggNOG-mapper	138119.DSY2184	Phage terminase large subunit (GpA)	NA
UHGV-0101874_30	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0101874_30	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0101874_30	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0101874_30	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0101874_30	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0101874_31	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0101874_31	UniRef90	UniRef90_A0A316SI17	Peptidylprolyl isomerase	NA
UHGV-0101874_31	eggNOG-mapper	411470.RUMGNA_00226	NA	NA
UHGV-0101874_31	Structural annotation	PF19645	NA	NA
UHGV-0101874_32	PHROG	phrog_21	portal protein	head and packaging
UHGV-0101874_32	UniRef90	UniRef90_E5VKE0	Lambda family phage portal protein	NA
UHGV-0101874_32	eggNOG-mapper	887325.HMPREF0381_0384	Phage portal protein, lambda family	NA
UHGV-0101874_32	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0101874_32	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0101874_32	COG	COG5511	Phage capsid protein	NA
UHGV-0101874_32	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0101874_33	KOfam	K06904	NA	NA
UHGV-0101874_33	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0101874_33	UniRef90	UniRef90_UPI0005509110	HK97 family phage prohead protease	NA
UHGV-0101874_33	eggNOG-mapper	1211817.CCAT010000013_gene3185	Caudovirus prohead serine protease	NA
UHGV-0101874_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0101874_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0101874_33	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0101874_34	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0101874_34	UniRef90	UniRef90_A0A413BFL7	Mu-like_gpT domain-containing protein	NA
UHGV-0101874_34	eggNOG-mapper	887325.HMPREF0381_0386	serine-type endopeptidase activity	NA
UHGV-0101874_34	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0101874_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0101874_34	Structural annotation	COG4397	NA	NA
UHGV-0101874_35	PHROG	phrog_122	head decoration	head and packaging
UHGV-0101874_35	UniRef90	UniRef90_A0A2A7AQS9	DNA breaking-rejoining protein	NA
UHGV-0101874_35	eggNOG-mapper	887325.HMPREF0381_0387	NA	NA
UHGV-0101874_35	Pfam	PF09956	NA	DUF2190
UHGV-0101874_35	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0101874_36	PHROG	phrog_34087	NA	unknown function
UHGV-0101874_36	eggNOG-mapper	887325.HMPREF0381_0388	NA	NA
UHGV-0101874_37	PHROG	phrog_2551	minor tail protein	tail
UHGV-0101874_37	eggNOG-mapper	411470.RUMGNA_00232	ATP-binding sugar transporter from pro-phage	NA
UHGV-0101874_37	Structural annotation	PF13856	NA	NA
UHGV-0101874_38	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0101874_38	UniRef90	UniRef90_UPI001C3BDE3A	Phage tail protein	NA
UHGV-0101874_38	eggNOG-mapper	478749.BRYFOR_07541	NA	NA
UHGV-0101874_38	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0101874_38	Structural annotation	PF06763	NA	NA
UHGV-0101874_39	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0101874_39	eggNOG-mapper	97139.C824_03375	NA	NA
UHGV-0101874_39	Structural annotation	PF08873	NA	NA
UHGV-0101874_40	KOfam	K06907	NA	NA
UHGV-0101874_40	PHROG	phrog_23	tail sheath	tail
UHGV-0101874_40	UniRef90	UniRef90_A0A173WPQ5	Phage tail sheath protein	NA
UHGV-0101874_40	eggNOG-mapper	887325.HMPREF0381_0393	COG3497 Phage tail sheath protein FI	NA
UHGV-0101874_40	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0101874_40	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0101874_41	KOfam	K06908	NA	NA
UHGV-0101874_41	PHROG	phrog_55	head closure	connector
UHGV-0101874_41	UniRef90	UniRef90_A0A3P6JS79	Phage tail tube protein FII	NA
UHGV-0101874_41	eggNOG-mapper	610130.Closa_0847	Phage tail tube protein FII	NA
UHGV-0101874_41	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0101874_41	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0101874_41	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0101874_42	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0101874_42	UniRef90	UniRef90_UPI0013794F6E	phage tail assembly protein	NA
UHGV-0101874_42	eggNOG-mapper	693746.OBV_22800	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0101874_42	Structural annotation	PF10109	NA	NA
UHGV-0101874_43	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0101874_43	UniRef90	UniRef90_A0A1M7SMG0	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0101874_43	eggNOG-mapper	478749.BRYFOR_07547	Phage tail tape measure protein, TP901 family	NA
UHGV-0101874_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0101874_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0101874_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0101874_43	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0101874_44	UniRef90	UniRef90_A0A7X5D9R3	Phage tail protein	NA
UHGV-0101874_44	eggNOG-mapper	411463.EUBVEN_00435	Phage Tail Protein X	NA
UHGV-0101874_44	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0101874_44	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0101874_45	KOfam	K06905	NA	NA
UHGV-0101874_45	PHROG	phrog_52	tail protein	tail
UHGV-0101874_45	UniRef90	UniRef90_UPI001EE59FE1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0101874_45	eggNOG-mapper	411470.RUMGNA_00242	COG3500 Phage protein D	NA
UHGV-0101874_45	COG	COG3500	NA	NA
UHGV-0101874_45	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0101874_46	UniRef90	UniRef90_UPI001C3A343B	Phage baseplate assembly protein V	NA
UHGV-0101874_46	eggNOG-mapper	411470.RUMGNA_00243	Baseplate assembly protein	NA
UHGV-0101874_46	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0101874_47	PHROG	phrog_76	tail protein	tail
UHGV-0101874_47	UniRef90	UniRef90_A0A6L9HIG7	Phage tail protein	NA
UHGV-0101874_47	eggNOG-mapper	693746.OBV_22760	Phage P2 GpU	NA
UHGV-0101874_47	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0101874_47	COG	COG3499	NA	NA
UHGV-0101874_47	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0101874_48	UniRef90	UniRef90_UPI0018CF747C	GPW/gp25 family protein	NA
UHGV-0101874_48	eggNOG-mapper	1501230.ET33_26370	GPW Gp25 family protein	NA
UHGV-0101874_48	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0101874_49	PHROG	phrog_6	baseplate protein	tail
UHGV-0101874_49	UniRef90	UniRef90_UPI001C3A9AFD	Baseplate J/gp47 family protein	NA
UHGV-0101874_49	eggNOG-mapper	411470.RUMGNA_00246	NA	NA
UHGV-0101874_49	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0101874_49	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0101874_49	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0101874_50	PHROG	phrog_48	tail protein	tail
UHGV-0101874_50	UniRef90	UniRef90_UPI00143A9FBF	phage tail protein I	NA
UHGV-0101874_50	eggNOG-mapper	97139.C824_03362	Phage tail protein (Tail_P2_I)	NA
UHGV-0101874_50	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0101874_50	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0101874_50	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0101874_50	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0101874_51	Structural annotation	PF12571, COG5301	NA	NA
UHGV-0101874_53	PHROG	phrog_4105	NA	unknown function
UHGV-0101874_53	eggNOG-mapper	397288.C806_00115	NA	NA
UHGV-0101874_54	PHROG	phrog_18218	NA	unknown function
UHGV-0101874_54	eggNOG-mapper	1378168.N510_02472	NA	NA
UHGV-0101874_55	UniRef90	UniRef90_A0A3D4CAN7	SH3b domain-containing protein	NA
UHGV-0101874_55	eggNOG-mapper	717606.PaecuDRAFT_1762	Papain-like cysteine protease AvrRpt2	NA
UHGV-0101874_55	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0101874_55	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0101874_55	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0101874_55	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA
UHGV-0101874_56	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0101874_56	UniRef90	UniRef90_UPI001A9A7EFD	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0101874_56	eggNOG-mapper	883109.HMPREF0380_00919	NA	NA
UHGV-0101874_56	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0101874_56	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0101874_56	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0101874_57	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0101874_57	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0101874_57	UniRef90	UniRef90_UPI001C12746A	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0101874_57	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0101874_57	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0101874_57	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0101874_57	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0101874_58	PHROG	phrog_297	holin	lysis
UHGV-0101874_58	UniRef90	UniRef90_A0A3D4CD28	Peptidase C51 domain-containing protein	NA
UHGV-0101874_58	eggNOG-mapper	1384065.JAGS01000005_gene3437	dextransucrase activity	NA
UHGV-0101874_58	Pfam	PF05257	CHAP domain	CHAP
UHGV-0101874_58	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0101874_58	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0101874_60	PHROG	phrog_1863	NA	unknown function
UHGV-0101874_60	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA