UHGV-0101897

Genome information

Genome length 39,288 bps

CDS count 67

Completeness 94.64% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101897
vOTU ID	vOTU-061077
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_217667
BioSample	SAMEA3541542
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.93
Jumbo phage	No

Genome content
Genome length	39,288 bps
GC content	40.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.93%
Average CDS length	540.40 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101897_1	PHROG	phrog_16228	NA	unknown function
UHGV-0101897_1	UniRef90	UniRef90_J9GIV9	Protein conserved in cyanobacteria (Fragment)	NA
UHGV-0101897_1	eggNOG-mapper	500632.CLONEX_01584	Putative restriction endonuclease	NA
UHGV-0101897_1	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0101897_1	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0101897_2	PHROG	phrog_3989	NA	unknown function
UHGV-0101897_2	UniRef90	UniRef90_A0A829NXH1	BRCT domain-containing protein	NA
UHGV-0101897_2	eggNOG-mapper	755731.Clo1100_2167	twin BRCT domain	NA
UHGV-0101897_2	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0101897_2	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0101897_2	Structural annotation	PF00533, NF004844	NA	NA
UHGV-0101897_3	PHROG	phrog_87	metallo-protease	other
UHGV-0101897_3	UniRef90	UniRef90_A0A829NVG0	Peptidase_M78 domain-containing protein	NA
UHGV-0101897_3	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0101897_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0101897_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0101897_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0101897_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0101897_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101897_4	UniRef90	UniRef90_A0A372UGD7	XRE family transcriptional regulator	NA
UHGV-0101897_4	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0101897_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101897_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0101897_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0101897_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101897_5	UniRef90	UniRef90_A0A372UGE9	XRE family transcriptional regulator	NA
UHGV-0101897_5	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0101897_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101897_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0101897_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0101897_7	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0101897_9	PHROG	phrog_585	NA	unknown function
UHGV-0101897_9	UniRef90	UniRef90_A0A413HZV5	NA	NA
UHGV-0101897_9	eggNOG-mapper	411465.PEPMIC_00712	NA	NA
UHGV-0101897_9	Pfam	PF10711	NA	DUF2513
UHGV-0101897_9	Structural annotation	PF10711, TIGR03433, COG3355	NA	NA
UHGV-0101897_13	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0101897_13	Structural annotation	PF10743, NF040990, COG3311	NA	NA
UHGV-0101897_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0101897_18	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0101897_18	Structural annotation	PF01446	NA	NA
UHGV-0101897_19	KOfam	K14159	rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]	NA
UHGV-0101897_19	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0101897_19	UniRef90	UniRef90_A0A414UW29	RNase H type-1 domain-containing protein	NA
UHGV-0101897_19	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0101897_19	Pfam	PF00075	RNase H	RNase_H
UHGV-0101897_19	COG	COG0328	Ribonuclease HI	NA
UHGV-0101897_19	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0101897_20	UniRef90	UniRef90_UPI0003F6328F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0101897_20	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0101897_20	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0101897_21	PHROG	phrog_8470	NA	unknown function
UHGV-0101897_21	UniRef90	UniRef90_UPI00042669A6	PcfJ domain-containing protein	NA
UHGV-0101897_21	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-0101897_21	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0101897_21	Structural annotation	PF14284	NA	NA
UHGV-0101897_22	PHROG	phrog_15077	NA	unknown function
UHGV-0101897_22	UniRef90	UniRef90_UPI001C0F37CA	NA	NA
UHGV-0101897_22	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0101897_22	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0101897_23	PHROG	phrog_7566	NA	unknown function
UHGV-0101897_23	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0101897_24	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0101897_25	PHROG	phrog_24386	NA	unknown function
UHGV-0101897_25	eggNOG-mapper	1235799.C818_04203	COG NOG28949 non supervised orthologous group	NA
UHGV-0101897_25	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0101897_25	Structural annotation	TIGR01689	NA	NA
UHGV-0101897_27	PHROG	phrog_26861	NA	unknown function
UHGV-0101897_27	UniRef90	UniRef90_A0A6N3DBN6	Single-stranded DNA-binding protein	NA
UHGV-0101897_27	eggNOG-mapper	622312.ROSEINA2194_00317	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0101897_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0101897_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0101897_29	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0101897_29	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0101897_29	UniRef90	UniRef90_A0A6N3DEG0	PAPS_reduct domain-containing protein	NA
UHGV-0101897_29	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0101897_29	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0101897_29	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0101897_29	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0101897_29	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0101897_30	eggNOG-mapper	97139.C824_00033	NA	NA
UHGV-0101897_32	Structural annotation	PF02895	NA	NA
UHGV-0101897_33	PHROG	phrog_15198	NA	unknown function
UHGV-0101897_33	UniRef90	UniRef90_A0A2N5P5E2	NA	NA
UHGV-0101897_33	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0101897_33	Pfam	PF04448	NA	DUF551
UHGV-0101897_33	Structural annotation	NF041588	NA	NA
UHGV-0101897_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101897_36	UniRef90	UniRef90_A0A3E4V8N2	Sigma70_r4 domain-containing protein	NA
UHGV-0101897_36	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-0101897_36	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0101897_36	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0101897_38	UniRef90	UniRef90_A0A174BR74	Chemotaxis protein	NA
UHGV-0101897_38	eggNOG-mapper	658088.HMPREF0987_01711	NA	NA
UHGV-0101897_38	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0101897_39	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101897_39	UniRef90	UniRef90_UPI000E5475E9	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-0101897_39	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0101897_39	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0101897_39	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0101897_39	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0101897_39	Structural annotation	PF07463, PF13392	NA	NA
UHGV-0101897_40	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0101897_40	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101897_40	UniRef90	UniRef90_R5TPY3	Phage related protein	NA
UHGV-0101897_40	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0101897_40	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0101897_40	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0101897_41	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0101897_41	UniRef90	UniRef90_UPI001A9A3020	P27 family phage terminase small subunit	NA
UHGV-0101897_41	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0101897_41	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0101897_41	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0101897_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0101897_42	UniRef90	UniRef90_A0A2N5NUK9	Terminase	NA
UHGV-0101897_42	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0101897_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0101897_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0101897_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0101897_42	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0101897_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-0101897_43	UniRef90	UniRef90_R5TQ78	Phage portal protein HK97 family	NA
UHGV-0101897_43	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0101897_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0101897_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0101897_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0101897_43	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0101897_45	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0101897_45	UniRef90	UniRef90_A0A829NQN8	Bro-N domain-containing protein	NA
UHGV-0101897_45	eggNOG-mapper	397290.C810_01420	BRO family, N-terminal domain	NA
UHGV-0101897_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0101897_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0101897_45	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0101897_46	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0101897_46	eggNOG-mapper	445971.ANASTE_01016	NA	NA
UHGV-0101897_46	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0101897_47	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0101897_47	UniRef90	UniRef90_A0A829NVK8	ORF6N domain-containing protein	NA
UHGV-0101897_47	eggNOG-mapper	478749.BRYFOR_07644	ORF6N domain	NA
UHGV-0101897_47	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0101897_47	Structural annotation	PF10543, TIGR02681, COG3561	NA	NA
UHGV-0101897_48	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0101897_48	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0101897_48	UniRef90	UniRef90_A0A6N3GKE0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0101897_48	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0101897_48	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0101897_48	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0101897_48	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0101897_49	PHROG	phrog_10	major head protein	head and packaging
UHGV-0101897_49	UniRef90	UniRef90_A0A4R3JAF4	HK97 family phage major capsid protein	NA
UHGV-0101897_49	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0101897_49	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0101897_49	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0101897_49	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0101897_49	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0101897_50	PHROG	phrog_749	NA	unknown function
UHGV-0101897_50	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0101897_51	PHROG	phrog_19734	NA	unknown function
UHGV-0101897_51	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0101897_51	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0101897_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0101897_52	UniRef90	UniRef90_A0A4R3JAK0	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0101897_52	eggNOG-mapper	411473.RUMCAL_01154	NA	NA
UHGV-0101897_52	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0101897_52	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0101897_53	PHROG	phrog_78	tail terminator	connector
UHGV-0101897_53	eggNOG-mapper	483218.BACPEC_01313	NA	NA
UHGV-0101897_53	Structural annotation	PF20765	NA	NA
UHGV-0101897_54	PHROG	phrog_88	major tail protein	tail
UHGV-0101897_54	UniRef90	UniRef90_A0A2N5NUL1	Phage tail protein	NA
UHGV-0101897_54	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0101897_54	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0101897_55	PHROG	phrog_709	NA	unknown function
UHGV-0101897_55	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0101897_55	Structural annotation	PF11836	NA	NA
UHGV-0101897_56	PHROG	phrog_3033	NA	unknown function
UHGV-0101897_56	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0101897_56	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0101897_57	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0101897_57	UniRef90	UniRef90_R5TQ69	PhageMin_Tail domain-containing protein	NA
UHGV-0101897_57	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0101897_57	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0101897_57	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0101897_57	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0101897_57	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0101897_58	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0101897_58	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0101897_58	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0101897_58	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0101897_58	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0101897_58	COG	COG4722	Phage-related protein YomH	NA
UHGV-0101897_58	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0101897_59	PHROG	phrog_13289	tail protein	tail
UHGV-0101897_59	UniRef90	UniRef90_A0A412C574	Prophage_tail domain-containing protein	NA
UHGV-0101897_59	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0101897_59	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0101897_59	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0101897_59	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0101897_59	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0101897_60	PHROG	phrog_14030	NA	unknown function
UHGV-0101897_60	UniRef90	UniRef90_A0A6N3GLP8	Phage_lysozyme2 domain-containing protein	NA
UHGV-0101897_60	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0101897_60	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0101897_60	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0101897_60	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0101897_61	PHROG	phrog_21765	NA	unknown function
UHGV-0101897_61	UniRef90	UniRef90_UPI000E4B80F2	collagen-like protein	NA
UHGV-0101897_61	eggNOG-mapper	97139.C824_05954	NA	NA
UHGV-0101897_62	PHROG	phrog_16164	NA	unknown function
UHGV-0101897_62	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0101897_62	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0101897_63	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0101897_63	Structural annotation	PF09136	NA	NA
UHGV-0101897_65	PHROG	phrog_24103	NA	unknown function
UHGV-0101897_65	eggNOG-mapper	420247.Msm_1688	NA	NA
UHGV-0101897_66	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0101897_66	Structural annotation	PF08931	NA	NA
UHGV-0101897_67	PHROG	phrog_1863	NA	unknown function
UHGV-0101897_67	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA