UHGV-0101991

Genome information

Genome length 39,527 bps

CDS count 53

Completeness 87.86% (medium-quality)

geNomad score 0.9744

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101991
vOTU ID	vOTU-025316
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_218664
BioSample	SAMEA3541538
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9744
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.82
Jumbo phage	No

Genome content
Genome length	39,527 bps
GC content	36.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.79%
Average CDS length	700.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101991_1	PHROG	phrog_6332	NA	unknown function
UHGV-0101991_1	UniRef90	UniRef90_A0A095XVC8	Cys_rich_CPCC domain-containing protein	NA
UHGV-0101991_1	eggNOG-mapper	1219626.HMPREF1639_03095	Cysteine-rich CPCC	NA
UHGV-0101991_1	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-0101991_2	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0101991_2	UniRef90	UniRef90_UPI0012EC933E	capsid protein	NA
UHGV-0101991_2	eggNOG-mapper	1294142.CINTURNW_1025	NA	NA
UHGV-0101991_2	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0101991_2	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0101991_2	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0101991_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0101991_3	UniRef90	UniRef90_UPI000AF926AF	capsid protein	NA
UHGV-0101991_3	eggNOG-mapper	1262449.CP6013_3191	NA	NA
UHGV-0101991_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0101991_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0101991_4	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0101991_4	UniRef90	UniRef90_A0A095YYC0	Terminase	NA
UHGV-0101991_4	eggNOG-mapper	1219626.HMPREF1639_07150	Phage terminase, large subunit, PBSX family	NA
UHGV-0101991_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0101991_4	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0101991_5	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0101991_5	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0101991_5	UniRef90	UniRef90_A0A095XP98	Terminase	NA
UHGV-0101991_5	eggNOG-mapper	1219626.HMPREF1639_07145	Terminase Small Subunit	NA
UHGV-0101991_5	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0101991_5	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0101991_5	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0101991_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101991_6	UniRef90	UniRef90_UPI001121E44A	NA	NA
UHGV-0101991_6	eggNOG-mapper	1219626.HMPREF1639_07135	sigma factor activity	NA
UHGV-0101991_6	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0101991_6	Structural annotation	PF07374, MF_00674, TIGR02984, COG2739	NA	NA
UHGV-0101991_7	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0101991_7	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0101991_7	UniRef90	UniRef90_A0A095XNT2	DEAD/DEAH box helicase	NA
UHGV-0101991_7	eggNOG-mapper	1219626.HMPREF1639_07130	SNF2 family N-terminal domain	NA
UHGV-0101991_7	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0101991_7	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0101991_7	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0101991_7	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0101991_7	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0101991_8	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101991_8	UniRef90	UniRef90_UPI00056CA7F9	VRR-NUC domain-containing protein	NA
UHGV-0101991_8	eggNOG-mapper	706434.HMPREF9429_00391	VRR_NUC	NA
UHGV-0101991_8	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0101991_9	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0101991_9	UniRef90	UniRef90_A0A095YYB5	Virulence-associated protein E	NA
UHGV-0101991_9	eggNOG-mapper	1219626.HMPREF1639_07120	Virulence-associated protein E	NA
UHGV-0101991_9	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0101991_9	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0101991_9	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0101991_11	PHROG	phrog_24248	NA	unknown function
UHGV-0101991_11	Structural annotation	PF10694	NA	NA
UHGV-0101991_12	UniRef90	UniRef90_C4IGT1	Conserved domain protein	NA
UHGV-0101991_12	eggNOG-mapper	632245.CLP_2625	NA	NA
UHGV-0101991_13	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-0101991_14	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0101991_14	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0101991_14	UniRef90	UniRef90_A0A095XNG8	SF3 helicase domain-containing protein	NA
UHGV-0101991_14	eggNOG-mapper	1219626.HMPREF1639_07360	D5 N terminal like	NA
UHGV-0101991_14	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0101991_14	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0101991_14	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0101991_14	Pfam	PF19263	NA	DUF5906
UHGV-0101991_14	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0101991_14	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0101991_14	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0101991_15	PHROG	phrog_236	nucleotide kinase	other
UHGV-0101991_15	UniRef90	UniRef90_A0A7X2P7B7	NA	NA
UHGV-0101991_15	eggNOG-mapper	1219626.HMPREF1639_07355	NA	NA
UHGV-0101991_15	Pfam	PF11753	NA	DUF3310
UHGV-0101991_16	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0101991_16	PHROG	phrog_5889	NA	unknown function
UHGV-0101991_16	UniRef90	UniRef90_A0A095XMT8	HD domain-containing protein	NA
UHGV-0101991_16	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0101991_16	Pfam	PF01966	HD domain	HD
UHGV-0101991_16	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0101991_16	Structural annotation	PF01966, TIGR03760, COG1418	NA	NA
UHGV-0101991_17	UniRef90	UniRef90_UPI001570F699	VRR-NUC domain-containing protein	NA
UHGV-0101991_17	eggNOG-mapper	203119.Cthe_1738	VRR_NUC	NA
UHGV-0101991_17	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0101991_17	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0101991_18	Structural annotation	PF05037, NF005674	NA	NA
UHGV-0101991_21	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101991_21	UniRef90	UniRef90_A0A095XNY3	YqaJ domain-containing protein	NA
UHGV-0101991_21	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-0101991_21	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0101991_21	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0101991_21	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0101991_23	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0101991_23	UniRef90	UniRef90_UPI00068B4160	ERF family protein	NA
UHGV-0101991_23	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0101991_23	Pfam	PF04404	ERF superfamily	ERF
UHGV-0101991_23	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0101991_23	Structural annotation	PF04404, PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0101991_26	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0101991_26	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0101991_26	UniRef90	UniRef90_A0A1I2DVF7	Helicase conserved C-terminal domain-containing protein	NA
UHGV-0101991_26	eggNOG-mapper	1219626.HMPREF1639_07295	SNF2 family N-terminal domain	NA
UHGV-0101991_26	PADLOC	DpdE_00003	DpdE	DPD
UHGV-0101991_26	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0101991_26	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0101991_26	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0101991_26	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0101991_31	UniRef90	UniRef90_A0A833CC75	Helix-turn-helix transcriptional regulator	NA
UHGV-0101991_31	eggNOG-mapper	387344.LVIS_1596	Helix-turn-helix XRE-family like proteins	NA
UHGV-0101991_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101991_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101991_31	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0101991_32	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0101991_32	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0101991_32	UniRef90	UniRef90_D3MU38	DNA-binding helix-turn-helix protein	NA
UHGV-0101991_32	eggNOG-mapper	596329.HMPREF0631_1344	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0101991_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101991_32	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0101991_32	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0101991_32	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0101991_33	PHROG	phrog_16443	NA	unknown function
UHGV-0101991_33	eggNOG-mapper	935948.KE386495_gene1339	NA	NA
UHGV-0101991_33	AcrCatalog	cluster_1135	NA	NA
UHGV-0101991_34	UniRef90	UniRef90_UPI00069140DB	helix-turn-helix transcriptional regulator	NA
UHGV-0101991_34	eggNOG-mapper	1567014.A0A0A7RTU8_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0101991_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0101991_34	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0101991_35	KOfam	K04068	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	NA
UHGV-0101991_35	PHROG	phrog_626	anaerobic ribonucleotide reductase small subunit	DNA, RNA and nucleotide metabolism
UHGV-0101991_35	UniRef90	UniRef90_A0A095ZS79	Anaerobic ribonucleoside-triphosphate reductase-activating protein	NA
UHGV-0101991_35	eggNOG-mapper	1219626.HMPREF1639_07390	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine	NA
UHGV-0101991_35	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-0101991_35	NCBIFam	TIGR02491.1	anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-0101991_35	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0101991_35	Structural annotation	PF13353, MF_00917, TIGR02491, COG0602	NA	NA
UHGV-0101991_36	Structural annotation	PF15911	NA	NA
UHGV-0101991_37	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0101991_37	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-0101991_37	UniRef90	UniRef90_A0A095YXZ8	Ribonucleoside-triphosphate reductase	NA
UHGV-0101991_37	eggNOG-mapper	1219626.HMPREF1639_07380	Ribonucleoside-triphosphate reductase	NA
UHGV-0101991_37	Pfam	PF03477	ATP cone domain	ATP-cone
UHGV-0101991_37	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0101991_37	NCBIFam	NF006732.0	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0101991_37	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0101991_37	Structural annotation	PF13597, PF03477, MF_00440, NF006732, COG1328	NA	NA
UHGV-0101991_38	PHROG	phrog_24248	NA	unknown function
UHGV-0101991_38	Structural annotation	PF10694	NA	NA
UHGV-0101991_39	UniRef90	UniRef90_C4IGT1	Conserved domain protein	NA
UHGV-0101991_39	eggNOG-mapper	632245.CLP_2625	NA	NA
UHGV-0101991_40	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-0101991_41	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0101991_41	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0101991_41	UniRef90	UniRef90_A0A416D4J0	N6_Mtase domain-containing protein	NA
UHGV-0101991_41	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0101991_41	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0101991_41	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0101991_41	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0101991_41	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0101991_42	PHROG	phrog_236	nucleotide kinase	other
UHGV-0101991_42	UniRef90	UniRef90_UPI001F32A62C	NA	NA
UHGV-0101991_42	eggNOG-mapper	1219626.HMPREF1639_07100	NA	NA
UHGV-0101991_42	Pfam	PF11753	NA	DUF3310
UHGV-0101991_43	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0101991_43	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0101991_43	UniRef90	UniRef90_A0A095XNS9	XRE family transcriptional regulator	NA
UHGV-0101991_43	eggNOG-mapper	1219626.HMPREF1639_07095	DNA polymerase A domain	NA
UHGV-0101991_43	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0101991_43	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0101991_43	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0101991_45	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0101991_45	UniRef90	UniRef90_UPI001D156B4E	NA	NA
UHGV-0101991_45	eggNOG-mapper	1219626.HMPREF1639_07085	NA	NA
UHGV-0101991_45	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0101991_45	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0101991_46	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101991_46	UniRef90	UniRef90_UPI001D158B4A	NA	NA
UHGV-0101991_46	eggNOG-mapper	1219626.HMPREF1639_07080	NA	NA
UHGV-0101991_46	Pfam	PF10926	NA	DUF2800
UHGV-0101991_46	COG	COG2887	RecB family exonuclease	NA
UHGV-0101991_46	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0101991_47	PHROG	phrog_22695	NA	unknown function
UHGV-0101991_47	eggNOG-mapper	879308.HMPREF9130_1214	NA	NA
UHGV-0101991_48	PHROG	phrog_633	transcriptional regulator	transcription regulation
UHGV-0101991_48	UniRef90	UniRef90_R5J767	Putative transcriptional regulator AsnC family	NA
UHGV-0101991_48	eggNOG-mapper	938278.CAJO01000051_gene817	DNA-binding transcription factor activity	NA
UHGV-0101991_48	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0101991_48	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0101991_48	Structural annotation	PF04703, MF_00732, NF033788, COG2345	NA	NA
UHGV-0101991_50	UniRef90	UniRef90_D3MU39	DNA-binding helix-turn-helix protein	NA
UHGV-0101991_50	eggNOG-mapper	596329.HMPREF0631_1345	NA	NA
UHGV-0101991_50	Pfam	PF05339	NA	DUF739
UHGV-0101991_50	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0101991_51	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0101991_51	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0101991_51	UniRef90	UniRef90_D3MU38	DNA-binding helix-turn-helix protein	NA
UHGV-0101991_51	eggNOG-mapper	596329.HMPREF0631_1344	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0101991_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101991_51	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0101991_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0101991_51	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0101991_52	PHROG	phrog_2700	NA	unknown function
UHGV-0101991_52	UniRef90	UniRef90_A0A095XN38	bPH_3 domain-containing protein	NA
UHGV-0101991_52	eggNOG-mapper	1280692.AUJL01000024_gene3405	Short C-terminal domain	NA
UHGV-0101991_52	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-0101991_52	Structural annotation	PF14470, NF033891, COG3402	NA	NA
UHGV-0101991_53	KOfam	K14059	int; integrase	NA
UHGV-0101991_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0101991_53	UniRef90	UniRef90_R5JI49	Integrase	NA
UHGV-0101991_53	eggNOG-mapper	1219626.HMPREF1639_07245	Phage integrase family	NA
UHGV-0101991_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101991_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0101991_53	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA