UHGV-0102024

Genome information

vOTU vOTU-020982

Genome length 41,717 bps

CDS count 62

Completeness 82.84% (medium-quality)

geNomad score 0.9665

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102024
vOTU ID	vOTU-020982
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_228611
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9665
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.41
Jumbo phage	No

Genome content
Genome length	41,717 bps
GC content	53.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.94%
Average CDS length	615.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102024_12	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0102024_12	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0102024_12	UniRef90	UniRef90_UPI00067109C6	helix-turn-helix transcriptional regulator	NA
UHGV-0102024_12	eggNOG-mapper	1203554.HMPREF1476_00235	Peptidase S24-like	NA
UHGV-0102024_12	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0102024_12	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0102024_12	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0102024_13	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0102024_14	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0102024_14	UniRef90	UniRef90_UPI0013562C35	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0102024_14	eggNOG-mapper	558169.AGAV01000001_gene3326	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0102024_14	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0102024_14	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0102024_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0102024_14	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0102024_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0102024_18	UniRef90	UniRef90_UPI000353C165	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0102024_18	eggNOG-mapper	883110.HMPREF9260_00672	holliday junction resolvase	NA
UHGV-0102024_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0102024_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0102024_21	eggNOG-mapper	742823.HMPREF9465_00880	NA	NA
UHGV-0102024_22	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0102024_22	eggNOG-mapper	742823.HMPREF9465_00227	NA	NA
UHGV-0102024_22	Structural annotation	PF12728, TIGR01764, COG4220	NA	NA
UHGV-0102024_23	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0102024_23	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0102024_23	UniRef90	UniRef90_A0A059WKL6	Terminase, large subunit	NA
UHGV-0102024_23	eggNOG-mapper	742823.HMPREF9465_00226	terminase GpA	NA
UHGV-0102024_23	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0102024_23	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0102024_23	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0102024_23	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0102024_23	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0102024_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0102024_24	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0102024_24	UniRef90	UniRef90_K1JKR6	Methyltransferase	NA
UHGV-0102024_24	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0102024_24	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0102024_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0102024_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0102024_24	COG	COG0863	DNA modification methylase	NA
UHGV-0102024_24	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0102024_25	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0102024_25	UniRef90	UniRef90_UPI001E2FDEBC	NA	NA
UHGV-0102024_25	eggNOG-mapper	742823.HMPREF9465_00224	NA	NA
UHGV-0102024_25	Pfam	PF19645	NA	DUF6148
UHGV-0102024_25	Structural annotation	PF19645	NA	NA
UHGV-0102024_26	PHROG	phrog_21	portal protein	head and packaging
UHGV-0102024_26	UniRef90	UniRef90_K1K050	Lambda family phage portal protein	NA
UHGV-0102024_26	eggNOG-mapper	742823.HMPREF9465_00223	Phage portal protein, lambda family	NA
UHGV-0102024_26	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0102024_26	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0102024_26	COG	COG5511	Phage capsid protein	NA
UHGV-0102024_26	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0102024_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0102024_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0102024_27	UniRef90	UniRef90_K1JX30	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0102024_27	eggNOG-mapper	742823.HMPREF9465_00222	Belongs to the peptidase S14 family	NA
UHGV-0102024_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0102024_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0102024_27	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0102024_28	PHROG	phrog_49	head decoration	head and packaging
UHGV-0102024_28	UniRef90	UniRef90_UPI00083A4FD2	head decoration protein	NA
UHGV-0102024_28	eggNOG-mapper	742823.HMPREF9465_00221	Bacteriophage lambda head decoration protein D	NA
UHGV-0102024_28	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0102024_28	Structural annotation	PF02924	NA	NA
UHGV-0102024_29	PHROG	phrog_29	major head protein	head and packaging
UHGV-0102024_29	UniRef90	UniRef90_A0A059WRQ2	Major capsid protein	NA
UHGV-0102024_29	eggNOG-mapper	742823.HMPREF9465_00220	Phage major capsid protein E	NA
UHGV-0102024_29	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0102024_29	HAMAP	MF_04133	Major capsid protein [E]	NA
UHGV-0102024_29	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0102024_31	PHROG	phrog_2551	minor tail protein	tail
UHGV-0102024_31	UniRef90	UniRef90_A0A067ZJA6	ATP-binding sugar transporter family protein	NA
UHGV-0102024_31	eggNOG-mapper	1415774.U728_503	NA	NA
UHGV-0102024_31	Structural annotation	PF13856, TIGR01563, COG5614	NA	NA
UHGV-0102024_32	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0102024_32	UniRef90	UniRef90_A0A662Z9Q3	Prophage minor tail protein Z (GPZ)	NA
UHGV-0102024_32	eggNOG-mapper	1476902.A0A067ZG41_9CAUD	virus tail	NA
UHGV-0102024_32	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0102024_32	Structural annotation	PF06763	NA	NA
UHGV-0102024_33	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0102024_33	eggNOG-mapper	742823.HMPREF9465_00216	NA	NA
UHGV-0102024_33	Structural annotation	PF06141	NA	NA
UHGV-0102024_34	PHROG	phrog_4089	NA	unknown function
UHGV-0102024_34	eggNOG-mapper	1262914.BN533_01006	Product inferred by homology to UniProt	NA
UHGV-0102024_35	KOfam	K06907	NA	NA
UHGV-0102024_35	PHROG	phrog_23	tail sheath	tail
UHGV-0102024_35	UniRef90	UniRef90_UPI00097DB3BB	phage tail protein	NA
UHGV-0102024_35	eggNOG-mapper	742823.HMPREF9465_00214	tail sheath protein	NA
UHGV-0102024_35	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0102024_35	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0102024_36	KOfam	K06908	NA	NA
UHGV-0102024_36	PHROG	phrog_55	head closure	connector
UHGV-0102024_36	UniRef90	UniRef90_K1K040	Phage major tail tube protein	NA
UHGV-0102024_36	eggNOG-mapper	742823.HMPREF9465_00213	major tail tube protein	NA
UHGV-0102024_36	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0102024_36	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0102024_36	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0102024_37	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0102024_37	UniRef90	UniRef90_UPI001CC06373	phage tail assembly protein	NA
UHGV-0102024_37	eggNOG-mapper	742823.HMPREF9465_00212	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0102024_37	Structural annotation	PF10109	NA	NA
UHGV-0102024_39	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0102024_39	UniRef90	UniRef90_A0A3B9Q8T3	Phage tail tape measure protein	NA
UHGV-0102024_39	eggNOG-mapper	742823.HMPREF9465_00211	Phage-related minor tail protein	NA
UHGV-0102024_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0102024_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0102024_39	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0102024_39	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0102024_40	PHROG	phrog_46	tail protein	tail
UHGV-0102024_40	UniRef90	UniRef90_UPI00093B8285	tail protein X	NA
UHGV-0102024_40	eggNOG-mapper	742823.HMPREF9465_00210	Tail protein	NA
UHGV-0102024_40	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0102024_40	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0102024_40	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0102024_41	KOfam	K06905	NA	NA
UHGV-0102024_41	PHROG	phrog_52	tail protein	tail
UHGV-0102024_41	UniRef90	UniRef90_A0A3B9Q8K7	Late control D family protein	NA
UHGV-0102024_41	eggNOG-mapper	742823.HMPREF9465_00209	Late control D family protein	NA
UHGV-0102024_41	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0102024_41	COG	COG3500	NA	NA
UHGV-0102024_41	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0102024_42	PHROG	phrog_9992	baseplate assembly protein	tail
UHGV-0102024_42	UniRef90	UniRef90_K1K036	Phage baseplate assembly protein V	NA
UHGV-0102024_42	eggNOG-mapper	742823.HMPREF9465_00208	Baseplate assembly protein	NA
UHGV-0102024_42	Pfam	PF18715	Phage spike trimer	Phage_spike
UHGV-0102024_42	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0102024_42	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0102024_42	Structural annotation	PF04717, PF11280, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0102024_43	KOfam	K06906	NA	NA
UHGV-0102024_43	PHROG	phrog_76	tail protein	tail
UHGV-0102024_43	UniRef90	UniRef90_UPI00097DFDBF	phage tail protein	NA
UHGV-0102024_43	eggNOG-mapper	742823.HMPREF9465_00207	Phage P2 GpU	NA
UHGV-0102024_43	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0102024_43	COG	COG3499	NA	NA
UHGV-0102024_43	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0102024_44	KOfam	K06903	NA	NA
UHGV-0102024_44	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0102024_44	UniRef90	UniRef90_K1JPQ2	GPW_gp25 domain-containing protein	NA
UHGV-0102024_44	eggNOG-mapper	742823.HMPREF9465_00206	GPW Gp25 family protein	NA
UHGV-0102024_44	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0102024_44	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0102024_44	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0102024_45	PHROG	phrog_6	baseplate protein	tail
UHGV-0102024_45	UniRef90	UniRef90_K1JKP8	Baseplate_J domain-containing protein	NA
UHGV-0102024_45	eggNOG-mapper	742823.HMPREF9465_00205	Baseplate J-like protein	NA
UHGV-0102024_45	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0102024_45	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0102024_45	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0102024_46	PHROG	phrog_48	tail protein	tail
UHGV-0102024_46	UniRef90	UniRef90_K1KKI1	Phage tail protein I	NA
UHGV-0102024_46	eggNOG-mapper	742823.HMPREF9465_00204	Tail protein I	NA
UHGV-0102024_46	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0102024_46	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0102024_46	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0102024_46	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0102024_47	PHROG	phrog_8443	tail fiber protein	tail
UHGV-0102024_47	eggNOG-mapper	742823.HMPREF9465_00203	tail collar domain protein	NA
UHGV-0102024_47	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0102024_47	COG	COG4675	Phage tail collar domain	NA
UHGV-0102024_47	Structural annotation	PF12571, COG5301	NA	NA
UHGV-0102024_48	PHROG	phrog_15547	NA	unknown function
UHGV-0102024_48	UniRef90	UniRef90_UPI00196180A7	tail fiber protein	NA
UHGV-0102024_48	eggNOG-mapper	742823.HMPREF9465_00202	tail collar domain protein	NA
UHGV-0102024_48	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0102024_48	COG	COG4675	Phage tail collar domain	NA
UHGV-0102024_48	Structural annotation	PF12571, PF14400, NF012201	NA	NA
UHGV-0102024_49	PHROG	phrog_188	tail fiber assembly protein	tail
UHGV-0102024_49	eggNOG-mapper	742823.HMPREF9465_00201	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0102024_49	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0102024_50	PHROG	phrog_1084	NA	unknown function
UHGV-0102024_50	UniRef90	UniRef90_A0A516LND1	Putative L-shaped tail fiber protein	NA
UHGV-0102024_50	eggNOG-mapper	742823.HMPREF9465_00200	NA	NA
UHGV-0102024_50	Structural annotation	PF10651, NF032891, COG5456	NA	NA
UHGV-0102024_51	UniRef90	UniRef90_K1KKH4	Collagen alpha-1(XVIII) chain	NA
UHGV-0102024_52	PHROG	phrog_38190	NA	unknown function
UHGV-0102024_52	eggNOG-mapper	742823.HMPREF9465_00198	translation initiation factor activity	NA
UHGV-0102024_52	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0102024_54	COG	COG4675	Phage tail collar domain	NA
UHGV-0102024_55	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0102024_55	UniRef90	UniRef90_UPI0013F5D6F0	phage tail assembly chaperone	NA
UHGV-0102024_55	eggNOG-mapper	742821.HMPREF9464_01813	Phage tail assembly chaperone protein	NA
UHGV-0102024_55	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0102024_55	Structural annotation	PF16778	NA	NA
UHGV-0102024_56	KOfam	K17249	pglH; GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase [EC:2.4.1.292]	NA
UHGV-0102024_56	PHROG	phrog_2170	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0102024_56	UniRef90	UniRef90_UPI001960A531	glycosyltransferase	NA
UHGV-0102024_56	eggNOG-mapper	742743.HMPREF9453_01091	Glycosyltransferase, group 1 family protein	NA
UHGV-0102024_56	Pfam	PF00534	Glycosyl transferases group 1	Glycos_transf_1
UHGV-0102024_56	COG	COG0438	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0102024_57	eggNOG-mapper	742823.HMPREF9465_00192	NA	NA
UHGV-0102024_58	KOfam	K16629	COL21A; collagen type XXI alpha	NA
UHGV-0102024_58	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0102024_58	UniRef90	UniRef90_K1JPN2	Peptidase S74 domain-containing protein	NA
UHGV-0102024_58	eggNOG-mapper	742823.HMPREF9465_00191	cell adhesion	NA
UHGV-0102024_58	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0102024_58	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0102024_58	COG	COG2911	Autotransporter translocation and assembly protein TamB	NA
UHGV-0102024_59	PHROG	phrog_199	holin	lysis
UHGV-0102024_59	UniRef90	UniRef90_K1JKN5	Toxin secretion/phage lysis holin	NA
UHGV-0102024_59	eggNOG-mapper	742823.HMPREF9465_00190	Bacteriophage holin family	NA
UHGV-0102024_59	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0102024_59	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0102024_59	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0102024_59	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0102024_60	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0102024_60	PHROG	phrog_435	endolysin	lysis
UHGV-0102024_60	UniRef90	UniRef90_K1KKG1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0102024_60	eggNOG-mapper	742823.HMPREF9465_00189	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0102024_60	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0102024_60	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0102024_60	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0102024_62	KOfam	K14059	int; integrase	NA
UHGV-0102024_62	PHROG	phrog_1	integrase	integration and excision
UHGV-0102024_62	UniRef90	UniRef90_K1K016	Tyr recombinase domain-containing protein	NA
UHGV-0102024_62	eggNOG-mapper	742823.HMPREF9465_00188	Belongs to the 'phage' integrase family	NA
UHGV-0102024_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102024_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102024_62	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA