UHGV-0102033

Genome information

Genome length 37,563 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102033
vOTU ID	vOTU-045457
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_209153
BioSample	SAMEA3449173
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.26
Jumbo phage	No

Genome content
Genome length	37,563 bps
GC content	29.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	89.20%
Average CDS length	504.31 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102033_3	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0102033_3	UniRef90	UniRef90_A0A1Q6L450	HTH cro/C1-type domain-containing protein	NA
UHGV-0102033_3	eggNOG-mapper	537013.CLOSTMETH_03300	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0102033_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0102033_3	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0102033_4	KOfam	K03555	mutS; DNA mismatch repair protein MutS	NA
UHGV-0102033_4	UniRef90	UniRef90_A0A1Q6L3U2	MutS_I domain-containing protein	NA
UHGV-0102033_4	eggNOG-mapper	1121104.AQXH01000001_gene1842	that it carries out the mismatch recognition step. This protein has a weak ATPase activity	NA
UHGV-0102033_4	Pfam	PF01624	MutS domain I	MutS_I
UHGV-0102033_4	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-0102033_4	Structural annotation	PF01624, NF006536	NA	NA
UHGV-0102033_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0102033_5	PHROG	phrog_7698	endolysin	lysis
UHGV-0102033_5	UniRef90	UniRef90_UPI001E4B3CAA	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0102033_5	eggNOG-mapper	1035184.HMPREF1042_1317	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0102033_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0102033_5	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0102033_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0102033_5	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0102033_6	Structural annotation	PF06946	NA	NA
UHGV-0102033_10	PHROG	phrog_134	NA	unknown function
UHGV-0102033_10	UniRef90	UniRef90_A0A1Q6L3Q4	AraC family transcriptional regulator	NA
UHGV-0102033_10	eggNOG-mapper	1298920.KI911353_gene543	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0102033_10	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0102033_10	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0102033_10	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0102033_11	eggNOG-mapper	742733.HMPREF9469_05015	NA	NA
UHGV-0102033_12	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0102033_12	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0102033_12	UniRef90	UniRef90_A0A1Y4IDW2	Reverse transcriptase domain-containing protein	NA
UHGV-0102033_12	eggNOG-mapper	1235802.C823_01102	Reverse transcriptase	NA
UHGV-0102033_12	PADLOC	drt-UG20	DRT	DRT
UHGV-0102033_12	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0102033_12	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0102033_12	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0102033_13	eggNOG-mapper	411460.RUMTOR_01328	NA	NA
UHGV-0102033_13	Structural annotation	PF05635, NF008912	NA	NA
UHGV-0102033_14	UniRef90	UniRef90_A0A1G6NQ88	NA	NA
UHGV-0102033_14	eggNOG-mapper	742733.HMPREF9469_05016	NA	NA
UHGV-0102033_14	Pfam	PF19789	NA	DUF6273
UHGV-0102033_15	PHROG	phrog_1220	head protein	head and packaging
UHGV-0102033_15	UniRef90	UniRef90_A0A2X0ZY62	Phage structural protein, truncation	NA
UHGV-0102033_15	eggNOG-mapper	768704.Desmer_4452	COG NOG18825 non supervised orthologous group	NA
UHGV-0102033_15	Structural annotation	PF20747	NA	NA
UHGV-0102033_16	PHROG	phrog_538	minor tail protein	tail
UHGV-0102033_16	UniRef90	UniRef90_A0A843FNJ4	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0102033_16	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0102033_16	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0102033_16	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0102033_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0102033_17	UniRef90	UniRef90_A0A6N7STN1	Phage tail family protein	NA
UHGV-0102033_17	eggNOG-mapper	411473.RUMCAL_02824	NA	NA
UHGV-0102033_17	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0102033_17	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0102033_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0102033_17	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0102033_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0102033_18	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-0102033_18	COG	COG1511	NA	NA
UHGV-0102033_19	PHROG	phrog_23464	NA	unknown function
UHGV-0102033_19	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0102033_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0102033_21	PHROG	phrog_88	major tail protein	tail
UHGV-0102033_21	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0102033_21	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-0102033_21	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0102033_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0102033_21	COG	COG5492	NA	NA
UHGV-0102033_21	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0102033_22	Structural annotation	PF05657	NA	NA
UHGV-0102033_23	Structural annotation	TIGR01725	NA	NA
UHGV-0102033_25	UniRef90	UniRef90_A0A6N7SSZ0	Head-tail adaptor protein	NA
UHGV-0102033_25	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0102033_26	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0102033_26	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0102033_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0102033_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0102033_28	UniRef90	UniRef90_A0A3E3DZT8	Phage major capsid protein	NA
UHGV-0102033_28	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0102033_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0102033_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0102033_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0102033_28	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0102033_29	KOfam	K06904	NA	NA
UHGV-0102033_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0102033_29	UniRef90	UniRef90_A0A6N2W9T5	Caudovirus prohead protease	NA
UHGV-0102033_29	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0102033_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0102033_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0102033_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0102033_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0102033_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0102033_30	UniRef90	UniRef90_R7FBP4	HK97 family phage portal protein	NA
UHGV-0102033_30	eggNOG-mapper	293826.Amet_2412	Portal protein	NA
UHGV-0102033_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0102033_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0102033_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0102033_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0102033_32	UniRef90	UniRef90_A0A6N4TPE2	Phage terminase large subunit	NA
UHGV-0102033_32	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0102033_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0102033_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0102033_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0102033_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0102033_33	PHROG	phrog_1066	NA	unknown function
UHGV-0102033_34	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0102033_34	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0102033_34	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0102033_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0102033_34	Pfam	PF13671	AAA domain	AAA_33
UHGV-0102033_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0102033_34	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0102033_35	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0102033_35	UniRef90	UniRef90_R5ZAG3	Phage-related terminase small subunit YqaS	NA
UHGV-0102033_35	Structural annotation	PF06056, NF040785, COG5484	NA	NA
UHGV-0102033_36	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0102033_36	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0102033_36	UniRef90	UniRef90_A0A7C6N6B4	DNA modification methylase	NA
UHGV-0102033_36	eggNOG-mapper	1235835.C814_01175	NA	NA
UHGV-0102033_36	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0102033_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0102033_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0102033_36	COG	COG0863	DNA modification methylase	NA
UHGV-0102033_36	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0102033_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0102033_37	Structural annotation	PF06530, PF21662, MF_00245, MF_00683, NF001068, COG2739	NA	NA
UHGV-0102033_43	eggNOG-mapper	626522.GCWU000325_01760	NA	NA
UHGV-0102033_43	Pfam	PF20137	NA	DUF6527
UHGV-0102033_44	PHROG	phrog_625	NA	unknown function
UHGV-0102033_44	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-0102033_44	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0102033_45	PHROG	phrog_23392	NA	unknown function
UHGV-0102033_47	PHROG	phrog_2717	NA	unknown function
UHGV-0102033_47	Structural annotation	PF15188, COG2882	NA	NA
UHGV-0102033_49	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0102033_49	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0102033_49	UniRef90	UniRef90_R6H754	NA	NA
UHGV-0102033_49	eggNOG-mapper	262071.A3QSG6_9CAUD	Endodeoxyribonuclease RusA	NA
UHGV-0102033_49	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0102033_49	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0102033_50	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0102033_50	UniRef90	UniRef90_K5CQ46	PAPS_reduct domain-containing protein	NA
UHGV-0102033_50	eggNOG-mapper	657309.BXY_08560	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0102033_50	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0102033_50	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0102033_50	Structural annotation	PF01507, MF_00063, TIGR00268, COG0175	NA	NA
UHGV-0102033_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0102033_57	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0102033_57	PHROG	phrog_24603	NA	unknown function
UHGV-0102033_57	eggNOG-mapper	262543.Exig_0912	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0102033_57	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0102033_57	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0102033_57	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0102033_58	PHROG	phrog_7880	NA	unknown function
UHGV-0102033_58	eggNOG-mapper	585502.HMPREF0645_2521	NA	NA
UHGV-0102033_64	UniRef90	UniRef90_A0A354MDC4	XRE family transcriptional regulator	NA
UHGV-0102033_64	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0102033_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102033_64	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0102033_64	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0102033_65	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0102033_65	UniRef90	UniRef90_A0A354MDC5	HTH cro/C1-type domain-containing protein	NA
UHGV-0102033_65	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0102033_65	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0102033_65	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0102033_65	Structural annotation	PF00717, PF12844, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0102033_66	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0102033_66	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0102033_66	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0102033_67	KOfam	K14059	int; integrase	NA
UHGV-0102033_67	PHROG	phrog_1	integrase	integration and excision
UHGV-0102033_67	UniRef90	UniRef90_R5LCS8	Phage integrase family site specific recombinase	NA
UHGV-0102033_67	eggNOG-mapper	1236976.JCM16418_768	Belongs to the 'phage' integrase family	NA
UHGV-0102033_67	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102033_67	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102033_67	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA