UHGV-0102260

Genome information

Genome length 33,170 bps

CDS count 50

Completeness 85.48% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102260
vOTU ID	vOTU-025996
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_206911
BioSample	SAMEA3449202
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.9
Jumbo phage	No

Genome content
Genome length	33,170 bps
GC content	44.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.04%
Average CDS length	621.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102260_1	PHROG	phrog_28004	NA	unknown function
UHGV-0102260_1	eggNOG-mapper	762982.HMPREF9442_01194	NA	NA
UHGV-0102260_5	UniRef90	UniRef90_A0A414XJG6	Peptidase S74 domain-containing protein	NA
UHGV-0102260_5	eggNOG-mapper	1122931.AUAE01000036_gene1066	Chaperone of endosialidase	NA
UHGV-0102260_5	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0102260_6	PHROG	phrog_30639	NA	unknown function
UHGV-0102260_6	eggNOG-mapper	997884.HMPREF1068_00297	NA	NA
UHGV-0102260_6	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0102260_7	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0102260_7	UniRef90	UniRef90_A0A374A185	Phage tail tape measure protein	NA
UHGV-0102260_7	eggNOG-mapper	411901.BACCAC_00724	Phage-related minor tail protein	NA
UHGV-0102260_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0102260_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0102260_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0102260_9	UniRef90	UniRef90_F3PQD8	Conserved domain protein	NA
UHGV-0102260_9	eggNOG-mapper	411901.BACCAC_00726	NA	NA
UHGV-0102260_10	eggNOG-mapper	997884.HMPREF1068_00293	NA	NA
UHGV-0102260_10	Structural annotation	PF19591	NA	NA
UHGV-0102260_11	PHROG	phrog_1407	major tail protein	tail
UHGV-0102260_11	UniRef90	UniRef90_UPI000EE5B84C	phage tail tube protein	NA
UHGV-0102260_11	eggNOG-mapper	997884.HMPREF1068_00292	Phage tail tube protein	NA
UHGV-0102260_11	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0102260_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0102260_12	Structural annotation	TIGR01725	NA	NA
UHGV-0102260_13	Structural annotation	PF09646	NA	NA
UHGV-0102260_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0102260_15	UniRef90	UniRef90_A0A414XJC1	Phage gp6-like head-tail connector protein	NA
UHGV-0102260_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0102260_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0102260_16	UniRef90	UniRef90_A0A413IG96	Helix-hairpin-helix domain-containing protein	NA
UHGV-0102260_16	Structural annotation	PF01281, PF14520	NA	NA
UHGV-0102260_17	PHROG	phrog_617	major head protein	head and packaging
UHGV-0102260_17	UniRef90	UniRef90_A0A3D8HAT7	Phage major capsid protein	NA
UHGV-0102260_17	eggNOG-mapper	547045.NEISICOT_01400	Phage capsid family	NA
UHGV-0102260_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0102260_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0102260_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0102260_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0102260_18	KOfam	K06904	NA	NA
UHGV-0102260_18	PHROG	phrog_617	major head protein	head and packaging
UHGV-0102260_18	UniRef90	UniRef90_UPI001898560D	HK97 family phage prohead protease	NA
UHGV-0102260_18	eggNOG-mapper	644968.DFW101_3507	Caudovirus prohead serine protease	NA
UHGV-0102260_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0102260_18	COG	COG3740	Phage head maturation protease	NA
UHGV-0102260_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0102260_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0102260_19	UniRef90	UniRef90_A0A3R6HIU9	Phage portal protein	NA
UHGV-0102260_19	eggNOG-mapper	398512.JQKC01000005_gene5448	Phage portal protein, HK97 family	NA
UHGV-0102260_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0102260_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0102260_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0102260_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0102260_20	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-0102260_20	UniRef90	UniRef90_UPI0009F2AA12	Rha family transcriptional regulator	NA
UHGV-0102260_20	eggNOG-mapper	397290.C810_01412	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0102260_20	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0102260_20	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0102260_20	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0102260_21	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0102260_21	UniRef90	UniRef90_A0A1Y4JM80	NA	NA
UHGV-0102260_21	eggNOG-mapper	1121098.HMPREF1534_00297	NA	NA
UHGV-0102260_21	Pfam	PF10097	NA	DUF2335
UHGV-0102260_21	COG	COG5346	NA	NA
UHGV-0102260_21	Structural annotation	PF10097, COG5346	NA	NA
UHGV-0102260_24	PHROG	phrog_32914	NA	unknown function
UHGV-0102260_26	eggNOG-mapper	1235788.C802_00312	NA	NA
UHGV-0102260_27	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0102260_27	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0102260_27	UniRef90	UniRef90_F3QSR2	Methyltransferase	NA
UHGV-0102260_27	eggNOG-mapper	762982.HMPREF9442_01222	DNA methylase	NA
UHGV-0102260_27	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0102260_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0102260_27	COG	COG0863	DNA modification methylase	NA
UHGV-0102260_27	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0102260_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0102260_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102260_30	UniRef90	UniRef90_R7JPX4	Single-stranded DNA-binding protein	NA
UHGV-0102260_30	eggNOG-mapper	242619.PG_0271	Single-stranded DNA-binding protein	NA
UHGV-0102260_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0102260_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0102260_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0102260_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0102260_31	UniRef90	UniRef90_UPI00189D9B45	zinc finger-like domain-containing protein	NA
UHGV-0102260_31	eggNOG-mapper	585543.HMPREF0969_00705	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate	NA
UHGV-0102260_31	COG	COG0178	Excinuclease UvrABC ATPase subunit	NA
UHGV-0102260_31	Structural annotation	PF00684	NA	NA
UHGV-0102260_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0102260_32	UniRef90	UniRef90_A0A3R6I174	Terminase large subunit	NA
UHGV-0102260_32	eggNOG-mapper	2754.EH55_13175	Terminase	NA
UHGV-0102260_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0102260_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0102260_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0102260_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0102260_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0102260_33	UniRef90	UniRef90_UPI001897D1F4	P27 family phage terminase small subunit	NA
UHGV-0102260_33	eggNOG-mapper	1433126.BN938_0084	Phage terminase, small subunit	NA
UHGV-0102260_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0102260_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0102260_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0102260_35	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0102260_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0102260_35	UniRef90	UniRef90_UPI001899FFB2	tyrosine-type recombinase/integrase	NA
UHGV-0102260_35	eggNOG-mapper	441768.ACL_0584	Belongs to the 'phage' integrase family	NA
UHGV-0102260_35	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0102260_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102260_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0102260_35	Structural annotation	PF00589, PF02899, MF_01807, NF001399, COG4974	NA	NA
UHGV-0102260_36	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102260_36	UniRef90	UniRef90_A0A413IGE7	HNH endonuclease	NA
UHGV-0102260_36	eggNOG-mapper	1408303.JNJJ01000049_gene2726	HNH endonuclease	NA
UHGV-0102260_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0102260_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0102260_37	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0102260_37	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0102260_37	UniRef90	UniRef90_UPI001897BF9E	replicative DNA helicase	NA
UHGV-0102260_37	eggNOG-mapper	411901.BACCAC_00472	Participates in initiation and elongation during chromosome replication	NA
UHGV-0102260_37	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0102260_37	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0102260_37	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0102260_37	COG	COG0305	Replicative DNA helicase	NA
UHGV-0102260_37	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0102260_38	PHROG	phrog_15768	NA	unknown function
UHGV-0102260_38	UniRef90	UniRef90_A0A414XJA7	NA	NA
UHGV-0102260_38	eggNOG-mapper	367737.Abu_1347	NA	NA
UHGV-0102260_38	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0102260_38	Structural annotation	PF19808	NA	NA
UHGV-0102260_41	UniRef90	UniRef90_UPI000D109565	NA	NA
UHGV-0102260_41	eggNOG-mapper	1461577.CCMH01000040_gene192	NA	NA
UHGV-0102260_41	Pfam	PF12964	NA	DUF3853
UHGV-0102260_41	Structural annotation	PF12964, NF040990, COG3311	NA	NA
UHGV-0102260_42	KOfam	K07692	degU; two-component system, NarL family, response regulator DegU	NA
UHGV-0102260_42	PHROG	phrog_10300	transcriptional regulator	transcription regulation
UHGV-0102260_42	UniRef90	UniRef90_A0A015YH78	Bacterial regulatory s, luxR family protein	NA
UHGV-0102260_42	eggNOG-mapper	411901.BACCAC_02344	transcriptional regulator, LuxR family	NA
UHGV-0102260_42	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0102260_42	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0102260_42	Structural annotation	PF00196, MF_00674, NF011940, COG2771	NA	NA
UHGV-0102260_43	UniRef90	UniRef90_A0A6L5XB14	Helix-turn-helix transcriptional regulator	NA
UHGV-0102260_43	Structural annotation	PF13693, NF041951, COG1476	NA	NA
UHGV-0102260_44	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA
UHGV-0102260_47	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0102260_47	UniRef90	UniRef90_A0A0F5JC02	Peptidase_S24 domain-containing protein	NA
UHGV-0102260_47	eggNOG-mapper	1122931.AUAE01000005_gene3284	Transcriptional regulator	NA
UHGV-0102260_47	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0102260_47	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0102260_47	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0102260_50	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0102260_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0102260_50	UniRef90	UniRef90_A0A3R6E9I0	Site-specific integrase	NA
UHGV-0102260_50	eggNOG-mapper	706436.HMPREF9074_07003	Belongs to the 'phage' integrase family	NA
UHGV-0102260_50	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0102260_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102260_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102260_50	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA