UHGV-0102263

Genome information

Genome length 23,827 bps

CDS count 37

Completeness 52.30% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102263
vOTU ID	vOTU-039025
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_233432
BioSample	SAMEA3708471
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	2
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.86
Jumbo phage	No

Genome content
Genome length	23,827 bps
GC content	39.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.27%
Average CDS length	598.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102263_1	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0102263_3	PHROG	phrog_1129	holin	lysis
UHGV-0102263_3	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0102263_3	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0102263_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0102263_3	Structural annotation	PF06946	NA	NA
UHGV-0102263_4	PHROG	phrog_3366	NA	unknown function
UHGV-0102263_4	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0102263_4	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0102263_5	PHROG	phrog_3266	tail completion	connector
UHGV-0102263_5	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0102263_5	Structural annotation	PF12691	NA	NA
UHGV-0102263_6	PHROG	phrog_3099	NA	unknown function
UHGV-0102263_6	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0102263_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0102263_7	PHROG	phrog_11299	NA	unknown function
UHGV-0102263_7	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0102263_7	Structural annotation	PF10666	NA	NA
UHGV-0102263_8	PHROG	phrog_706	NA	unknown function
UHGV-0102263_8	UniRef90	UniRef90_UPI001C0F2CC6	Gp15 family bacteriophage protein	NA
UHGV-0102263_8	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0102263_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0102263_8	Structural annotation	PF06854	NA	NA
UHGV-0102263_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0102263_9	UniRef90	UniRef90_A0A1C5P271	Chromosome segregation protein	NA
UHGV-0102263_9	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0102263_9	COG	COG5412	Phage-related protein	NA
UHGV-0102263_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0102263_11	PHROG	phrog_6616	tail protein	tail
UHGV-0102263_11	UniRef90	UniRef90_A0A2V2D052	Peptidase S74 domain-containing protein	NA
UHGV-0102263_11	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0102263_11	COG	COG4926	Phage-related protein	NA
UHGV-0102263_11	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0102263_13	eggNOG-mapper	880070.Cycma_1221	lipolytic protein G-D-S-L family	NA
UHGV-0102263_13	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0102263_13	Structural annotation	PF08244, PF04311, NF007819, COG2845, COG2273	NA	NA
UHGV-0102263_14	PHROG	phrog_9589	endolysin	lysis
UHGV-0102263_14	UniRef90	UniRef90_UPI0009315CF1	SH3 domain-containing protein	NA
UHGV-0102263_14	eggNOG-mapper	476272.RUMHYD_03304	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0102263_14	Pfam	PF05257	CHAP domain	CHAP
UHGV-0102263_14	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0102263_14	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0102263_14	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-0102263_15	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0102263_15	PHROG	phrog_95	integrase	integration and excision
UHGV-0102263_15	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-0102263_15	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0102263_15	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0102263_15	Pfam	PF07508	Recombinase	Recombinase
UHGV-0102263_15	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0102263_15	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0102263_15	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0102263_16	PHROG	phrog_10059	NA	unknown function
UHGV-0102263_16	UniRef90	UniRef90_A0A839JXV0	Ig domain-containing protein	NA
UHGV-0102263_16	eggNOG-mapper	1410624.JNKK01000014_gene1631	Bacterial Ig-like domain (group 2)	NA
UHGV-0102263_16	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0102263_16	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-0102263_16	Structural annotation	PF02368, PF11906, NF005261	NA	NA
UHGV-0102263_18	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0102263_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0102263_18	UniRef90	UniRef90_UPI001C01C52A	helix-turn-helix domain-containing protein	NA
UHGV-0102263_18	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0102263_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102263_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0102263_18	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0102263_20	Structural annotation	PF13601, TIGR04176	NA	NA
UHGV-0102263_27	PHROG	phrog_5070	NA	unknown function
UHGV-0102263_27	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0102263_27	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0102263_27	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0102263_27	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0102263_27	Structural annotation	NF040481	NA	NA
UHGV-0102263_29	UniRef90	UniRef90_A0A395X9S5	Toxin HipA	NA
UHGV-0102263_29	eggNOG-mapper	478749.BRYFOR_05417	NA	NA
UHGV-0102263_31	Structural annotation	PF10922, TIGR03741	NA	NA
UHGV-0102263_33	Structural annotation	NF011879	NA	NA
UHGV-0102263_34	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0102263_35	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0102263_35	UniRef90	UniRef90_A0A414X367	Single-stranded DNA-binding protein	NA
UHGV-0102263_35	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0102263_35	Pfam	PF04404	ERF superfamily	ERF
UHGV-0102263_35	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0102263_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0102263_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102263_36	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-0102263_36	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0102263_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0102263_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0102263_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0102263_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0102263_36	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0102263_37	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0102263_37	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-0102263_37	eggNOG-mapper	1298920.KI911353_gene4868	NA	NA
UHGV-0102263_37	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0102263_37	Structural annotation	PF03834, NF040956, COG1948	NA	NA