UHGV-0102272

Genome information

Genome length 35,342 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9678

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102272
vOTU ID	vOTU-062532
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_210618
BioSample	SAMEA3449317
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9678
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.88
Jumbo phage	No

Genome content
Genome length	35,342 bps
GC content	39.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.44%
Average CDS length	638.06 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102272_1	UniRef90	UniRef90_A0A0K9NAM5	RNA polymerase principal sigma factor, sigma 70	NA
UHGV-0102272_1	eggNOG-mapper	411462.DORLON_00093	NA	NA
UHGV-0102272_2	KOfam	K06131	clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]	NA
UHGV-0102272_2	UniRef90	UniRef90_A0A173WYL4	Predicted membrane protein	NA
UHGV-0102272_2	eggNOG-mapper	1280698.AUJS01000016_gene1773	Putative ABC-transporter type IV	NA
UHGV-0102272_2	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0102272_2	COG	COG4905	NA	NA
UHGV-0102272_3	KOfam	K14059	int; integrase	NA
UHGV-0102272_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0102272_3	UniRef90	UniRef90_A0A173RBY2	Site-specific tyrosine recombinase XerD	NA
UHGV-0102272_3	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0102272_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102272_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102272_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0102272_4	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0102272_4	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0102272_4	UniRef90	UniRef90_A0A845KIV2	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0102272_4	eggNOG-mapper	411470.RUMGNA_03915	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0102272_4	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0102272_4	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0102272_4	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0102272_5	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0102272_5	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0102272_5	UniRef90	UniRef90_A0A845KJ98	Addiction module toxin, HicA family	NA
UHGV-0102272_5	eggNOG-mapper	478749.BRYFOR_07601	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0102272_5	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0102272_5	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0102272_5	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0102272_7	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0102272_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0102272_7	UniRef90	UniRef90_UPI00164CACBE	helix-turn-helix domain-containing protein	NA
UHGV-0102272_7	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0102272_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102272_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0102272_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0102272_8	eggNOG-mapper	411468.CLOSCI_00322	NA	NA
UHGV-0102272_12	PHROG	phrog_23707	NA	unknown function
UHGV-0102272_12	UniRef90	UniRef90_UPI00156E595D	alanine racemase	NA
UHGV-0102272_12	eggNOG-mapper	537007.BLAHAN_04222	NA	NA
UHGV-0102272_13	Structural annotation	PF14282	NA	NA
UHGV-0102272_14	UniRef90	UniRef90_A0A3R7BR33	NA	NA
UHGV-0102272_14	eggNOG-mapper	1235800.C819_00518	NA	NA
UHGV-0102272_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0102272_16	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0102272_16	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-0102272_16	Structural annotation	PF21578	NA	NA
UHGV-0102272_18	PHROG	phrog_824	NA	unknown function
UHGV-0102272_18	UniRef90	UniRef90_UPI0015713852	VRR-NUC domain-containing protein	NA
UHGV-0102272_18	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0102272_18	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0102272_19	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0102272_20	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0102272_20	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0102272_20	UniRef90	UniRef90_UPI00156DD98C	ParA family protein	NA
UHGV-0102272_20	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0102272_20	Pfam	PF13614	AAA domain	AAA_31
UHGV-0102272_20	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0102272_20	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0102272_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0102272_22	PHROG	phrog_15982	NA	unknown function
UHGV-0102272_22	UniRef90	UniRef90_UPI0015702B3C	ParB/RepB/Spo0J family partition protein	NA
UHGV-0102272_22	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0102272_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0102272_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0102272_22	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0102272_24	PHROG	phrog_7024	NA	unknown function
UHGV-0102272_24	eggNOG-mapper	1230342.CTM_16912	NA	NA
UHGV-0102272_24	AcrCatalog	cluster_1398	NA	NA
UHGV-0102272_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0102272_25	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0102272_25	Structural annotation	PF02996	NA	NA
UHGV-0102272_28	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102272_28	UniRef90	UniRef90_UPI0015708A7C	HNH endonuclease	NA
UHGV-0102272_28	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0102272_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0102272_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0102272_29	PHROG	phrog_104	portal protein	head and packaging
UHGV-0102272_29	UniRef90	UniRef90_UPI001A9C29A4	phage portal protein	NA
UHGV-0102272_29	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0102272_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0102272_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0102272_30	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0102272_30	UniRef90	UniRef90_UPI00156EC2C0	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0102272_30	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-0102272_30	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0102272_30	COG	COG2369	NA	NA
UHGV-0102272_30	Structural annotation	PF15542	NA	NA
UHGV-0102272_31	PHROG	phrog_1865	NA	unknown function
UHGV-0102272_31	Structural annotation	PF07073, MF_00436, NF008636, COG4568	NA	NA
UHGV-0102272_32	PHROG	phrog_17688	NA	unknown function
UHGV-0102272_32	UniRef90	UniRef90_R6SFU1	Putative phage terminase large subunit	NA
UHGV-0102272_32	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-0102272_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0102272_32	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0102272_33	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0102272_33	UniRef90	UniRef90_UPI0004636BB3	NA	NA
UHGV-0102272_33	eggNOG-mapper	1280698.AUJS01000007_gene1037	NA	NA
UHGV-0102272_33	Pfam	PF14265	NA	DUF4355
UHGV-0102272_33	Structural annotation	PF14265	NA	NA
UHGV-0102272_34	PHROG	phrog_32396	NA	unknown function
UHGV-0102272_34	UniRef90	UniRef90_UPI001961D35B	phage major capsid protein	NA
UHGV-0102272_34	eggNOG-mapper	1280698.AUJS01000007_gene1038	Phage capsid family	NA
UHGV-0102272_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0102272_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0102272_36	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0102272_36	UniRef90	UniRef90_UPI0019617F49	phage Gp19/Gp15/Gp42 family protein	NA
UHGV-0102272_36	eggNOG-mapper	1280698.AUJS01000007_gene1040	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0102272_36	Pfam	PF09355	NA	Phage_Gp19
UHGV-0102272_36	Structural annotation	PF09355	NA	NA
UHGV-0102272_37	PHROG	phrog_501	head closure Hc1	connector
UHGV-0102272_37	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-0102272_37	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0102272_38	PHROG	phrog_387	neck protein	connector
UHGV-0102272_39	PHROG	phrog_123	tail terminator	connector
UHGV-0102272_39	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0102272_39	Structural annotation	PF06141	NA	NA
UHGV-0102272_40	PHROG	phrog_117	major tail protein	tail
UHGV-0102272_40	UniRef90	UniRef90_A0A396L6W3	Phage tail protein	NA
UHGV-0102272_40	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0102272_40	COG	COG5492	NA	NA
UHGV-0102272_40	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0102272_41	PHROG	phrog_1526	NA	unknown function
UHGV-0102272_41	eggNOG-mapper	1121864.OMO_02159	NA	NA
UHGV-0102272_42	PHROG	phrog_1633	NA	unknown function
UHGV-0102272_42	UniRef90	UniRef90_UPI0006C2F0F2	NA	NA
UHGV-0102272_42	eggNOG-mapper	1280698.AUJS01000007_gene1046	NA	NA
UHGV-0102272_42	Pfam	PF17318	NA	DUF5361
UHGV-0102272_42	Structural annotation	PF17318	NA	NA
UHGV-0102272_43	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0102272_43	UniRef90	UniRef90_A0A174L0T5	Phage-related protein	NA
UHGV-0102272_43	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-0102272_43	COG	COG1511	NA	NA
UHGV-0102272_43	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0102272_44	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0102272_44	UniRef90	UniRef90_A0A173RD59	Phage-related protein	NA
UHGV-0102272_44	eggNOG-mapper	556261.HMPREF0240_01280	Phage tail protein	NA
UHGV-0102272_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0102272_44	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0102272_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0102272_44	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0102272_45	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0102272_45	UniRef90	UniRef90_A0A6N9JRZ5	Prophage_tail domain-containing protein	NA
UHGV-0102272_45	eggNOG-mapper	556261.HMPREF0240_01281	cellulase activity	NA
UHGV-0102272_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0102272_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0102272_45	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0102272_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0102272_46	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-0102272_46	PHROG	phrog_819	tail protein	tail
UHGV-0102272_46	eggNOG-mapper	411901.BACCAC_01130	COG3209 Rhs family protein	NA
UHGV-0102272_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0102272_46	COG	COG4926	Phage-related protein	NA
UHGV-0102272_47	UniRef90	UniRef90_A0A414S363	NA	NA
UHGV-0102272_47	eggNOG-mapper	1211817.CCAT010000008_gene929	NA	NA
UHGV-0102272_47	Pfam	PF10899	Putative abortive phage resistance protein AbiGi, antitoxin	AbiGi
UHGV-0102272_47	Structural annotation	PF10899	NA	NA
UHGV-0102272_48	PHROG	phrog_1009	NA	unknown function
UHGV-0102272_48	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0102272_48	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0102272_49	PHROG	phrog_1129	holin	lysis
UHGV-0102272_49	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-0102272_49	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0102272_49	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0102272_49	Structural annotation	PF06946	NA	NA
UHGV-0102272_50	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0102272_50	PHROG	phrog_2742	endolysin	lysis
UHGV-0102272_50	UniRef90	UniRef90_A0A845KJG7	MurNAc-LAA domain-containing protein	NA
UHGV-0102272_50	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0102272_50	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0102272_50	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0102272_50	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0102272_50	Structural annotation	PF01520, TIGR02883, COG5492, COG0860	NA	NA
UHGV-0102272_51	UniRef90	UniRef90_A0A174L6H5	NA	NA
UHGV-0102272_51	eggNOG-mapper	411462.DORLON_00096	NA	NA
UHGV-0102272_51	Pfam	PF14199	NA	DUF4317
UHGV-0102272_51	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA