UHGV-0102298

Genome information

Genome length 35,563 bps

CDS count 57

Completeness 86.23% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102298
vOTU ID	vOTU-037155
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_218811
BioSample	SAMEA3541532
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.72
Jumbo phage	No

Genome content
Genome length	35,563 bps
GC content	49.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.52%
Average CDS length	575.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102298_1	PHROG	phrog_443	holin	lysis
UHGV-0102298_1	UniRef90	UniRef90_UPI001C3BFF52	Holin	NA
UHGV-0102298_1	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0102298_1	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0102298_1	Structural annotation	PF16945	NA	NA
UHGV-0102298_3	Structural annotation	PF18760	NA	NA
UHGV-0102298_5	PHROG	phrog_21141	NA	unknown function
UHGV-0102298_5	eggNOG-mapper	1235802.C823_05281	NA	NA
UHGV-0102298_5	Structural annotation	PF04232, MF_01122, NF003088	NA	NA
UHGV-0102298_7	KOfam	K14059	int; integrase	NA
UHGV-0102298_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0102298_7	UniRef90	UniRef90_UPI00189BAE2B	site-specific integrase	NA
UHGV-0102298_7	eggNOG-mapper	469596.HMPREF9488_03210	Phage integrase family	NA
UHGV-0102298_7	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0102298_7	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0102298_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102298_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102298_7	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0102298_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0102298_8	UniRef90	UniRef90_UPI001D09EDED	helix-turn-helix domain-containing protein	NA
UHGV-0102298_8	eggNOG-mapper	1211035.CD30_04630	Peptidase S24-like	NA
UHGV-0102298_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102298_8	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0102298_8	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0102298_10	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0102298_10	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0102298_10	UniRef90	UniRef90_UPI00189831EE	helix-turn-helix domain-containing protein	NA
UHGV-0102298_10	eggNOG-mapper	411461.DORFOR_01130	Helix-turn-helix XRE-family like proteins	NA
UHGV-0102298_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102298_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0102298_10	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0102298_13	Structural annotation	PF02895	NA	NA
UHGV-0102298_16	Structural annotation	NF040990	NA	NA
UHGV-0102298_19	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102298_19	UniRef90	UniRef90_UPI001D0AE809	NA	NA
UHGV-0102298_19	eggNOG-mapper	1235796.C815_00944	NA	NA
UHGV-0102298_19	Pfam	PF10926	NA	DUF2800
UHGV-0102298_19	COG	COG2887	RecB family exonuclease	NA
UHGV-0102298_19	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0102298_23	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0102298_23	UniRef90	UniRef90_UPI0018993946	NA	NA
UHGV-0102298_23	eggNOG-mapper	552396.HMPREF0863_00290	NA	NA
UHGV-0102298_23	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0102298_23	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0102298_24	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0102298_24	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0102298_24	UniRef90	UniRef90_UPI001D0A031A	DNA polymerase	NA
UHGV-0102298_24	eggNOG-mapper	552396.HMPREF0863_00289	DNA polymerase	NA
UHGV-0102298_24	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0102298_24	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0102298_24	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0102298_25	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0102298_25	UniRef90	UniRef90_UPI001D0A1C03	virulence-associated E family protein	NA
UHGV-0102298_25	eggNOG-mapper	552396.HMPREF0863_00286	NA	NA
UHGV-0102298_25	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0102298_25	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0102298_25	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0102298_28	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102298_28	UniRef90	UniRef90_UPI000F4F491A	VRR-NUC domain-containing protein	NA
UHGV-0102298_28	eggNOG-mapper	226185.EF_0329	VRR_NUC	NA
UHGV-0102298_28	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0102298_29	KOfam	K20098	ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]	NA
UHGV-0102298_29	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0102298_29	UniRef90	UniRef90_UPI001E5F6A13	DEAD/DEAH box helicase	NA
UHGV-0102298_29	eggNOG-mapper	552396.HMPREF0863_00284	SNF2 family N-terminal domain	NA
UHGV-0102298_29	PADLOC	DpdE_00011	DpdE	DPD
UHGV-0102298_29	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0102298_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0102298_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0102298_29	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0102298_30	Structural annotation	TIGR01637	NA	NA
UHGV-0102298_31	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0102298_31	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0102298_31	UniRef90	UniRef90_UPI001D0A8584	DNA modification methylase	NA
UHGV-0102298_31	eggNOG-mapper	1118057.CAGX01000020_gene1624	ParB-like nuclease domain	NA
UHGV-0102298_31	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0102298_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0102298_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0102298_31	COG	COG0863	DNA modification methylase	NA
UHGV-0102298_31	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0102298_32	PHROG	phrog_2412	NA	unknown function
UHGV-0102298_32	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-0102298_32	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0102298_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0102298_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0102298_33	UniRef90	UniRef90_UPI001D0AA0D4	terminase family protein	NA
UHGV-0102298_33	eggNOG-mapper	552396.HMPREF0863_00282	DNA packaging	NA
UHGV-0102298_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0102298_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0102298_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0102298_34	eggNOG-mapper	552396.HMPREF0863_00281	phage minor capsid protein	NA
UHGV-0102298_35	KOfam	K07497	K07497; putative transposase	NA
UHGV-0102298_35	PHROG	phrog_310	transposase	integration and excision
UHGV-0102298_35	UniRef90	UniRef90_A0A1Y4SJJ0	IS481 family transposase	NA
UHGV-0102298_35	eggNOG-mapper	1280680.AUJU01000065_gene3260	Integrase core domain	NA
UHGV-0102298_35	Pfam	PF13565	Homeodomain-like domain	HTH_32
UHGV-0102298_35	Pfam	PF00665	Integrase core domain	rve
UHGV-0102298_35	Pfam	PF13683	Integrase core domain	rve_3
UHGV-0102298_35	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0102298_35	Structural annotation	PF00665, PF13565, NF033594, COG4584	NA	NA
UHGV-0102298_36	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-0102298_36	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0102298_36	UniRef90	UniRef90_A0A1Y4SID7	AAA domain-containing protein	NA
UHGV-0102298_36	eggNOG-mapper	500632.CLONEX_01334	AAA domain	NA
UHGV-0102298_36	Pfam	PF13401	AAA domain	AAA_22
UHGV-0102298_36	COG	COG3267	Type II secretory pathway ATPase component GspA/ExeA/MshM	NA
UHGV-0102298_36	Structural annotation	PF05621, PF20436, MF_01407, TIGR03015, COG3267	NA	NA
UHGV-0102298_37	eggNOG-mapper	1256908.HMPREF0373_00034	NA	NA
UHGV-0102298_37	Pfam	PF20323	NA	DUF6618
UHGV-0102298_39	PHROG	phrog_533	portal protein	head and packaging
UHGV-0102298_39	UniRef90	UniRef90_A0A3N0I2Z0	Phage portal protein	NA
UHGV-0102298_39	eggNOG-mapper	552396.HMPREF0863_00281	phage minor capsid protein	NA
UHGV-0102298_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0102298_40	UniRef90	UniRef90_UPI001D0B3D9B	phage minor capsid protein	NA
UHGV-0102298_40	eggNOG-mapper	999413.HMPREF1094_00219	Phage minor capsid protein 2	NA
UHGV-0102298_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0102298_40	COG	COG2369	NA	NA
UHGV-0102298_40	Structural annotation	PF06152	NA	NA
UHGV-0102298_42	PHROG	phrog_3675	NA	unknown function
UHGV-0102298_42	UniRef90	UniRef90_A0A3N0I0X7	Dihydrolipoyl dehydrogenase	NA
UHGV-0102298_42	eggNOG-mapper	596329.HMPREF0631_0681	YjcQ protein	NA
UHGV-0102298_42	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0102298_42	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0102298_44	PHROG	phrog_8680	NA	unknown function
UHGV-0102298_44	UniRef90	UniRef90_A0A415D8N8	NA	NA
UHGV-0102298_44	eggNOG-mapper	1229517.AMFD01000023_gene1324	NA	NA
UHGV-0102298_44	Pfam	PF14386	NA	DUF4417
UHGV-0102298_44	Structural annotation	PF14386	NA	NA
UHGV-0102298_45	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0102298_45	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0102298_45	Structural annotation	PF03496, MF_04142, NF040688	NA	NA
UHGV-0102298_47	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0102298_47	UniRef90	UniRef90_UPI001D0A686C	phage scaffolding protein	NA
UHGV-0102298_47	eggNOG-mapper	1232449.BAHV02000010_gene2713	NA	NA
UHGV-0102298_47	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0102298_47	Structural annotation	PF06810	NA	NA
UHGV-0102298_48	PHROG	phrog_212	major head protein	head and packaging
UHGV-0102298_48	UniRef90	UniRef90_UPI00189A455D	phage capsid protein	NA
UHGV-0102298_48	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-0102298_48	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0102298_50	Structural annotation	PF20536	NA	NA
UHGV-0102298_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0102298_51	UniRef90	UniRef90_UPI001D09B824	minor capsid protein	NA
UHGV-0102298_51	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0102298_51	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0102298_51	Structural annotation	PF11114	NA	NA
UHGV-0102298_52	UniRef90	UniRef90_UPI001D09DA0D	ABC transporter permease	NA
UHGV-0102298_52	Structural annotation	PF16807	NA	NA
UHGV-0102298_53	PHROG	phrog_3099	NA	unknown function
UHGV-0102298_53	eggNOG-mapper	1321782.HMPREF1986_02273	NA	NA
UHGV-0102298_53	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0102298_54	Structural annotation	PF10666	NA	NA
UHGV-0102298_55	PHROG	phrog_706	NA	unknown function
UHGV-0102298_55	UniRef90	UniRef90_UPI001D0AAED0	bacteriophage Gp15 family protein	NA
UHGV-0102298_55	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-0102298_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0102298_55	Structural annotation	PF06854	NA	NA
UHGV-0102298_56	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0102298_56	UniRef90	UniRef90_UPI001D0A3DB9	tape measure protein	NA
UHGV-0102298_56	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-0102298_56	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0102298_56	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0102298_56	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0102298_57	COG	COG3682	Transcriptional regulator, CopY/TcrY family	NA