UHGV-0102416

Genome information

Genome length 41,303 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102416
vOTU ID	vOTU-045462
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_224690
BioSample	SAMEA3708599
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.89
Jumbo phage	No

Genome content
Genome length	41,303 bps
GC content	46.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	89.04%
Average CDS length	550.79 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102416_2	KOfam	K14059	int; integrase	NA
UHGV-0102416_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0102416_2	UniRef90	UniRef90_UPI00164A4E4A	site-specific integrase	NA
UHGV-0102416_2	eggNOG-mapper	1121468.AUBR01000001_gene448	Phage integrase family	NA
UHGV-0102416_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0102416_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102416_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102416_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0102416_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0102416_3	PHROG	phrog_291	endolysin	lysis
UHGV-0102416_3	UniRef90	UniRef90_A0A1C5ZRX7	Autolytic lysozyme	NA
UHGV-0102416_3	eggNOG-mapper	1226325.HMPREF1548_03449	Glycosyl hydrolases family 25	NA
UHGV-0102416_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0102416_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0102416_3	Structural annotation	PF01183, TIGR00612, COG3757	NA	NA
UHGV-0102416_4	PHROG	phrog_18593	NA	unknown function
UHGV-0102416_4	UniRef90	UniRef90_R5HAU4	Carbohydrate binding domain protein	NA
UHGV-0102416_4	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0102416_4	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0102416_4	Structural annotation	PF14600	NA	NA
UHGV-0102416_7	PHROG	phrog_18725	NA	unknown function
UHGV-0102416_7	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0102416_8	PHROG	phrog_13879	NA	unknown function
UHGV-0102416_8	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0102416_8	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0102416_9	PHROG	phrog_1194	NA	unknown function
UHGV-0102416_9	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0102416_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0102416_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0102416_10	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0102416_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0102416_11	PHROG	phrog_706	NA	unknown function
UHGV-0102416_11	UniRef90	UniRef90_R5H1B0	Bacteriophage Gp15 protein	NA
UHGV-0102416_11	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0102416_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0102416_11	Structural annotation	PF06854	NA	NA
UHGV-0102416_12	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-0102416_12	eggNOG-mapper	397290.C810_05234	NA	NA
UHGV-0102416_12	Structural annotation	PF10666	NA	NA
UHGV-0102416_13	PHROG	phrog_3099	NA	unknown function
UHGV-0102416_13	UniRef90	UniRef90_C4IFF0	S-l_SbsC_C domain-containing protein	NA
UHGV-0102416_13	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-0102416_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0102416_14	PHROG	phrog_3266	tail completion	connector
UHGV-0102416_14	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0102416_14	Structural annotation	PF12691	NA	NA
UHGV-0102416_15	PHROG	phrog_3366	NA	unknown function
UHGV-0102416_15	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0102416_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0102416_16	PHROG	phrog_18218	NA	unknown function
UHGV-0102416_16	UniRef90	UniRef90_A0A3D0FFR6	Ribonuclease	NA
UHGV-0102416_16	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0102416_16	Structural annotation	PF06946	NA	NA
UHGV-0102416_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0102416_17	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0102416_18	PHROG	phrog_544	major head protein	head and packaging
UHGV-0102416_18	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0102416_18	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0102416_18	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0102416_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0102416_19	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0102416_19	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0102416_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0102416_20	PHROG	phrog_28802	NA	unknown function
UHGV-0102416_20	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0102416_21	PHROG	phrog_20016	NA	unknown function
UHGV-0102416_21	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0102416_21	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0102416_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0102416_22	PHROG	phrog_16490	NA	unknown function
UHGV-0102416_22	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0102416_23	PHROG	phrog_22984	NA	unknown function
UHGV-0102416_24	PHROG	phrog_21718	NA	unknown function
UHGV-0102416_24	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0102416_25	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0102416_25	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0102416_25	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0102416_25	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0102416_26	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0102416_26	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0102416_27	PHROG	phrog_3754	NA	unknown function
UHGV-0102416_27	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0102416_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0102416_28	UniRef90	UniRef90_UPI000E4E3D5A	phage capsid protein	NA
UHGV-0102416_28	eggNOG-mapper	663278.Ethha_0499	NA	NA
UHGV-0102416_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0102416_28	COG	COG2369	NA	NA
UHGV-0102416_28	Structural annotation	PF06152	NA	NA
UHGV-0102416_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0102416_29	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0102416_29	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0102416_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0102416_29	Structural annotation	PF11114	NA	NA
UHGV-0102416_30	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0102416_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0102416_31	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0102416_31	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0102416_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0102416_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0102416_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0102416_32	UniRef90	UniRef90_R5GX83	Prophage LambdaCh01 terminase large subunit PBSX family	NA
UHGV-0102416_32	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0102416_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0102416_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0102416_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0102416_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0102416_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0102416_33	Structural annotation	PF07141, NF012144	NA	NA
UHGV-0102416_34	KOfam	K04769	spoVT; AbrB family transcriptional regulator, stage V sporulation protein T	NA
UHGV-0102416_34	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0102416_34	UniRef90	UniRef90_R5HAQ8	Stage V sporulation protein T	NA
UHGV-0102416_34	eggNOG-mapper	1121091.AUMP01000030_gene4010	Stage V sporulation protein T	NA
UHGV-0102416_34	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0102416_34	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0102416_34	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0102416_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0102416_35	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0102416_35	UniRef90	UniRef90_R5GWS3	DNA (Cytosine-5-)-methyltransferase	NA
UHGV-0102416_35	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0102416_35	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0102416_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0102416_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0102416_35	COG	COG0863	DNA modification methylase	NA
UHGV-0102416_35	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0102416_36	PHROG	phrog_33130	NA	unknown function
UHGV-0102416_37	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0102416_38	PHROG	phrog_3886	NA	unknown function
UHGV-0102416_38	eggNOG-mapper	1298920.KI911353_gene2686	NA	NA
UHGV-0102416_39	KOfam	K03744	lemA; LemA protein	NA
UHGV-0102416_39	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0102416_39	UniRef90	UniRef90_A0A6N2WCF4	LemA family protein	NA
UHGV-0102416_39	eggNOG-mapper	742740.HMPREF9474_02293	LemA family	NA
UHGV-0102416_39	Pfam	PF04011	LemA family	LemA
UHGV-0102416_39	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0102416_39	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0102416_46	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0102416_51	Structural annotation	PF04936	NA	NA
UHGV-0102416_53	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0102416_53	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0102416_53	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0102416_54	Structural annotation	PF21715	NA	NA
UHGV-0102416_55	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0102416_55	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0102416_56	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0102416_56	eggNOG-mapper	718252.FP2_01040	NA	NA
UHGV-0102416_56	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0102416_57	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102416_57	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0102416_57	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0102416_57	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0102416_58	PHROG	phrog_674	NA	unknown function
UHGV-0102416_58	UniRef90	UniRef90_A0A416HMJ3	NA	NA
UHGV-0102416_58	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0102416_58	Pfam	PF07083	NA	DUF1351
UHGV-0102416_58	Structural annotation	PF07083	NA	NA
UHGV-0102416_63	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0102416_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0102416_63	UniRef90	UniRef90_N1ZZY4	HTH cro/C1-type domain-containing protein	NA
UHGV-0102416_63	eggNOG-mapper	97139.C824_05937	Helix-turn-helix XRE-family like proteins	NA
UHGV-0102416_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102416_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0102416_63	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0102416_65	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0102416_65	PHROG	phrog_10292	NA	unknown function
UHGV-0102416_65	UniRef90	UniRef90_UPI0011DD6C00	NINE protein	NA
UHGV-0102416_65	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0102416_65	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0102416_65	Pfam	PF05154	TM2 domain	TM2
UHGV-0102416_65	COG	COG2314	NA	NA
UHGV-0102416_65	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-0102416_66	KOfam	K14059	int; integrase	NA
UHGV-0102416_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0102416_66	UniRef90	UniRef90_A0A396QHT0	Site-specific integrase	NA
UHGV-0102416_66	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0102416_66	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0102416_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102416_66	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102416_66	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0102416_67	UniRef90	UniRef90_A0A0V8QFS4	HTH cro/C1-type domain-containing protein	NA
UHGV-0102416_67	eggNOG-mapper	742733.HMPREF9469_02677	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0102416_67	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0102416_67	Structural annotation	PF13560, NF000090, COG3655	NA	NA