UHGV-0102452

Genome information

Genome length 17,844 bps

CDS count 23

Completeness 94.37% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102452
vOTU ID	vOTU-072230
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_215843
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.84
Jumbo phage	No

Genome content
Genome length	17,844 bps
GC content	44.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	89.75%
Average CDS length	698.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102452_3	Structural annotation	PF17548, MF_00273, NF001981	NA	NA
UHGV-0102452_4	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102452_4	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0102452_4	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0102452_4	Structural annotation	PF17427	NA	NA
UHGV-0102452_5	Structural annotation	PF05435	NA	NA
UHGV-0102452_6	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0102452_6	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0102452_6	UniRef90	UniRef90_B7SSM2	DNA polymerase	NA
UHGV-0102452_6	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0102452_6	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0102452_6	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0102452_7	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0102452_7	Structural annotation	PF12651, NF041793, COG3905	NA	NA
UHGV-0102452_8	eggNOG-mapper	742742.HMPREF9452_00418	NA	NA
UHGV-0102452_8	Pfam	PF11753	NA	DUF3310
UHGV-0102452_10	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0102452_10	UniRef90	UniRef90_A0A3G3LXZ7	Major capsid protein	NA
UHGV-0102452_10	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0102452_10	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0102452_11	PHROG	phrog_2248	tail protein	tail
UHGV-0102452_11	UniRef90	UniRef90_A0A7S5V1W7	Major tail protein	NA
UHGV-0102452_11	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0102452_11	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0102452_11	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0102452_12	PHROG	phrog_2038	upper collar connector	connector
UHGV-0102452_12	UniRef90	UniRef90_A0A7S5V0G4	Upper collar connector protein	NA
UHGV-0102452_12	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0102452_12	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0102452_12	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0102452_13	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0102452_13	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0102452_13	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0102452_16	Structural annotation	PF08931	NA	NA
UHGV-0102452_17	UniRef90	UniRef90_A0A6G5XVW6	NlpC/P60 domain-containing protein	NA
UHGV-0102452_17	eggNOG-mapper	1235800.C819_00464	NA	NA
UHGV-0102452_17	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0102452_17	Structural annotation	NF008096, COG0791	NA	NA
UHGV-0102452_18	PHROG	phrog_2150	terminase	head and packaging
UHGV-0102452_18	UniRef90	UniRef90_UPI000BF7E49A	phage DNA encapsidation protein	NA
UHGV-0102452_18	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0102452_18	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0102452_18	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0102452_19	PHROG	phrog_199	holin	lysis
UHGV-0102452_19	UniRef90	UniRef90_UPI001C595E0D	phage holin family protein	NA
UHGV-0102452_19	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0102452_19	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0102452_19	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0102452_19	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0102452_20	PHROG	phrog_14030	NA	unknown function
UHGV-0102452_20	UniRef90	UniRef90_R5JC74	CHAP domain protein	NA
UHGV-0102452_20	eggNOG-mapper	401473.BDP_0983	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0102452_20	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0102452_20	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0102452_20	Structural annotation	PF05382, PF08230, NF033743, COG0791	NA	NA