UHGV-0102453

Genome information

Genome length 37,574 bps

CDS count 64

Completeness 99.23% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102453
vOTU ID	vOTU-008040
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_215834
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.39
Jumbo phage	No

Genome content
Genome length	37,574 bps
GC content	36.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.16%
Average CDS length	539.48 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102453_1	UniRef90	UniRef90_A0A174BR74	Chemotaxis protein	NA
UHGV-0102453_1	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0102453_1	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0102453_3	PHROG	phrog_21357	endolysin	lysis
UHGV-0102453_3	UniRef90	UniRef90_D4MVQ6	CHAP domain	NA
UHGV-0102453_3	eggNOG-mapper	693746.OBV_19030	CHAP domain	NA
UHGV-0102453_3	Pfam	PF05257	CHAP domain	CHAP
UHGV-0102453_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0102453_3	Structural annotation	PF01471, PF00877, TIGR02594, TIGR03979, COG3942	NA	NA
UHGV-0102453_4	PHROG	phrog_199	holin	lysis
UHGV-0102453_4	UniRef90	UniRef90_D4MVQ5	Holin	NA
UHGV-0102453_4	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0102453_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0102453_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0102453_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0102453_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0102453_6	eggNOG-mapper	411461.DORFOR_01184	NA	NA
UHGV-0102453_6	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0102453_7	PHROG	phrog_32322	NA	unknown function
UHGV-0102453_7	UniRef90	UniRef90_D4MVQ2	Glycosyl hydrolase	NA
UHGV-0102453_7	eggNOG-mapper	411461.DORFOR_01183	NA	NA
UHGV-0102453_7	Pfam	PF13754	NA	Big_3_4
UHGV-0102453_7	Structural annotation	PF13754	NA	NA
UHGV-0102453_8	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0102453_8	PHROG	phrog_11157	NA	unknown function
UHGV-0102453_8	UniRef90	UniRef90_A0A174BVA4	Bacillopeptidase F	NA
UHGV-0102453_8	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-0102453_8	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0102453_8	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0102453_8	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0102453_10	PHROG	phrog_37900	NA	unknown function
UHGV-0102453_10	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0102453_11	PHROG	phrog_521	tail protein	tail
UHGV-0102453_11	UniRef90	UniRef90_A0A4P8IJC0	Phage-like element PBSX protein xkdT	NA
UHGV-0102453_11	eggNOG-mapper	397288.C806_00058	NA	NA
UHGV-0102453_11	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0102453_11	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0102453_11	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0102453_12	PHROG	phrog_6	baseplate protein	tail
UHGV-0102453_12	UniRef90	UniRef90_L1Q1C9	Baseplate_J domain-containing protein	NA
UHGV-0102453_12	eggNOG-mapper	397288.C806_00059	Baseplate J-like protein	NA
UHGV-0102453_12	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0102453_12	COG	COG3299	NA	NA
UHGV-0102453_12	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0102453_13	PHROG	phrog_120	baseplate protein	tail
UHGV-0102453_13	UniRef90	UniRef90_A0A5B3G6K8	NA	NA
UHGV-0102453_13	eggNOG-mapper	665950.HMPREF1025_01340	NA	NA
UHGV-0102453_13	Pfam	PF10934	NA	DUF2634
UHGV-0102453_13	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0102453_13	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0102453_14	Structural annotation	PF01957, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0102453_15	KOfam	K13694	mepS, spr; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]	NA
UHGV-0102453_15	PHROG	phrog_400	tail protein	tail
UHGV-0102453_15	UniRef90	UniRef90_A0A174BSD0	Gamma-DL-glutamyl hydrolase	NA
UHGV-0102453_15	eggNOG-mapper	500633.CLOHIR_00378	NLP P60 protein	NA
UHGV-0102453_15	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0102453_15	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0102453_15	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0102453_16	PHROG	phrog_380	endolysin	lysis
UHGV-0102453_16	UniRef90	UniRef90_D4MVP8	LysM domain	NA
UHGV-0102453_16	eggNOG-mapper	1286171.EAL2_c11150	LysM domain	NA
UHGV-0102453_16	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0102453_16	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0102453_17	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0102453_17	UniRef90	UniRef90_D4MVP7	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0102453_17	eggNOG-mapper	195103.CPF_1576	tail tape measure protein	NA
UHGV-0102453_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0102453_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0102453_17	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0102453_17	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0102453_19	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0102453_19	UniRef90	UniRef90_D4MVP5	Phage XkdN-like protein	NA
UHGV-0102453_19	eggNOG-mapper	1095750.HMPREF9970_2276	PFAM Phage XkdN-like protein	NA
UHGV-0102453_19	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0102453_19	Structural annotation	PF08890	NA	NA
UHGV-0102453_20	PHROG	phrog_365	tail protein	tail
UHGV-0102453_20	UniRef90	UniRef90_D4MVP4	Phage portal protein	NA
UHGV-0102453_20	eggNOG-mapper	397288.C806_00067	Phage tail tube protein	NA
UHGV-0102453_20	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0102453_20	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0102453_21	PHROG	phrog_1480	tail sheath	tail
UHGV-0102453_21	UniRef90	UniRef90_D4MVP3	Phage tail protein	NA
UHGV-0102453_21	eggNOG-mapper	1408324.JNJK01000006_gene1387	Phage tail sheath C-terminal domain	NA
UHGV-0102453_21	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0102453_21	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0102453_21	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0102453_22	PHROG	phrog_525	NA	unknown function
UHGV-0102453_22	Pfam	PF20765	NA	DUF6838
UHGV-0102453_22	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0102453_23	UniRef90	UniRef90_UPI001D1276FE	HK97 gp10 family phage protein	NA
UHGV-0102453_23	eggNOG-mapper	397288.C806_00070	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0102453_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0102453_24	PHROG	phrog_6865	NA	unknown function
UHGV-0102453_25	PHROG	phrog_25	head closure Hc1	connector
UHGV-0102453_25	UniRef90	UniRef90_D4MVN9	Bacteriophage head-tail adaptor	NA
UHGV-0102453_25	eggNOG-mapper	568816.Acin_1341	Phage head-tail joining protein	NA
UHGV-0102453_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0102453_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0102453_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0102453_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0102453_26	UniRef90	UniRef90_D4MVN8	Phage QLRG family, putative DNA packaging	NA
UHGV-0102453_26	eggNOG-mapper	1095750.HMPREF9970_2270	Phage gp6-like head-tail connector protein	NA
UHGV-0102453_26	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0102453_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0102453_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0102453_27	UniRef90	UniRef90_A0A417V1L1	Phage major capsid protein	NA
UHGV-0102453_27	eggNOG-mapper	1391647.AVSV01000039_gene1100	Phage major capsid protein, HK97 family	NA
UHGV-0102453_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0102453_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0102453_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0102453_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0102453_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0102453_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0102453_28	UniRef90	UniRef90_A0A174BU12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0102453_28	eggNOG-mapper	1567013.A0A0A7RTN2_9CAUD	Clp protease	NA
UHGV-0102453_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0102453_28	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0102453_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0102453_29	UniRef90	UniRef90_D4MVN6	Phage portal protein, HK97 family	NA
UHGV-0102453_29	eggNOG-mapper	97139.C824_05972	Phage portal protein, HK97 family	NA
UHGV-0102453_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0102453_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0102453_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0102453_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0102453_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0102453_30	UniRef90	UniRef90_D4MVN5	Phage terminase-like protein, large subunit	NA
UHGV-0102453_30	eggNOG-mapper	97139.C824_05973	Terminase	NA
UHGV-0102453_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0102453_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0102453_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0102453_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0102453_31	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0102453_31	UniRef90	UniRef90_D4MVN4	Phage terminase, small subunit, putative, P27 family	NA
UHGV-0102453_31	eggNOG-mapper	536232.CLM_1655	Phage terminase, small subunit	NA
UHGV-0102453_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0102453_31	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0102453_31	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0102453_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0102453_32	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102453_32	UniRef90	UniRef90_A0A174BYY3	HNHc domain-containing protein	NA
UHGV-0102453_32	eggNOG-mapper	1235792.C808_03068	HNH endonuclease	NA
UHGV-0102453_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0102453_34	PHROG	phrog_11237	NA	unknown function
UHGV-0102453_34	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0102453_36	Structural annotation	PF09723, TIGR02605, COG1996	NA	NA
UHGV-0102453_40	PHROG	phrog_31560	NA	unknown function
UHGV-0102453_41	PHROG	phrog_151	transposase	integration and excision
UHGV-0102453_41	UniRef90	UniRef90_A0A174BVM9	Transposase	NA
UHGV-0102453_41	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0102453_41	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0102453_41	Structural annotation	PF01710, NF040595, COG3415	NA	NA
UHGV-0102453_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0102453_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102453_43	UniRef90	UniRef90_A0A174C0A5	Single-stranded DNA-binding protein	NA
UHGV-0102453_43	eggNOG-mapper	1408436.JHXY01000007_gene409	Single-stranded DNA-binding protein	NA
UHGV-0102453_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0102453_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0102453_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0102453_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0102453_45	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0102453_45	PHROG	phrog_15982	NA	unknown function
UHGV-0102453_45	UniRef90	UniRef90_A0A417V0R1	NA	NA
UHGV-0102453_45	eggNOG-mapper	1232453.BAIF02000028_gene2716	ParB-like nuclease domain	NA
UHGV-0102453_45	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0102453_45	Pfam	PF12961	NA	DUF3850
UHGV-0102453_45	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0102453_45	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0102453_46	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0102453_46	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0102453_46	UniRef90	UniRef90_A0A174C0J7	Sporulation initiation inhibitor protein soj	NA
UHGV-0102453_46	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0102453_46	Pfam	PF13614	AAA domain	AAA_31
UHGV-0102453_46	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0102453_46	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0102453_48	PHROG	phrog_824	NA	unknown function
UHGV-0102453_48	UniRef90	UniRef90_D4MVL4	VRR-NUC domain	NA
UHGV-0102453_48	eggNOG-mapper	610130.Closa_0716	VRR_NUC	NA
UHGV-0102453_48	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0102453_49	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0102453_49	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-0102453_49	Structural annotation	PF21578	NA	NA
UHGV-0102453_51	PHROG	phrog_3777	NA	unknown function
UHGV-0102453_51	UniRef90	UniRef90_UPI00067F5C2D	NA	NA
UHGV-0102453_51	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0102453_51	Structural annotation	PF18441	NA	NA
UHGV-0102453_60	PHROG	phrog_1664	NA	unknown function
UHGV-0102453_60	UniRef90	UniRef90_A0A1Q2CAT9	zinc_ribbon_2 domain-containing protein	NA
UHGV-0102453_61	Structural annotation	PF07875	NA	NA
UHGV-0102453_63	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0102453_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0102453_63	UniRef90	UniRef90_A0A417V0Q6	XRE family transcriptional regulator	NA
UHGV-0102453_63	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0102453_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102453_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0102453_63	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0102453_64	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0102453_64	PHROG	phrog_95	integrase	integration and excision
UHGV-0102453_64	UniRef90	UniRef90_A0A174C1X8	Recombinase	NA
UHGV-0102453_64	eggNOG-mapper	658088.HMPREF0987_00026	Recombinase	NA
UHGV-0102453_64	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0102453_64	Pfam	PF07508	Recombinase	Recombinase
UHGV-0102453_64	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0102453_64	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0102453_64	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA