UHGV-0102480

Genome information

Genome length 32,745 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102480
vOTU ID	vOTU-009408
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_235123
BioSample	SAMEA3708584
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.24
Jumbo phage	No

Genome content
Genome length	32,745 bps
GC content	60.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.58%
Average CDS length	628.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102480_1	eggNOG-mapper	552398.HMPREF0866_03087	NA	NA
UHGV-0102480_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0102480_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0102480_2	UniRef90	UniRef90_A0A417HSQ2	Recombinase family protein	NA
UHGV-0102480_2	eggNOG-mapper	1356854.N007_18555	Recombinase	NA
UHGV-0102480_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0102480_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0102480_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0102480_2	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0102480_5	UniRef90	UniRef90_A0A4R1QMH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0102480_5	eggNOG-mapper	445972.ANACOL_00210	NA	NA
UHGV-0102480_5	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0102480_5	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0102480_6	PHROG	phrog_1129	holin	lysis
UHGV-0102480_6	UniRef90	UniRef90_R5D220	Putative holin	NA
UHGV-0102480_6	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0102480_6	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0102480_6	Structural annotation	PF06946	NA	NA
UHGV-0102480_7	PHROG	phrog_4105	NA	unknown function
UHGV-0102480_7	eggNOG-mapper	592026.GCWU0000282_003290	NA	NA
UHGV-0102480_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0102480_8	PHROG	phrog_1794	amidase	lysis
UHGV-0102480_8	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0102480_8	eggNOG-mapper	1235793.C809_04312	Ami_2	NA
UHGV-0102480_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0102480_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0102480_8	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0102480_9	Structural annotation	PF00629, NF033675	NA	NA
UHGV-0102480_10	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0102480_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0102480_11	PHROG	phrog_3558	tail protein	tail
UHGV-0102480_11	UniRef90	UniRef90_A0A3D1VAY1	Prophage_tail domain-containing protein	NA
UHGV-0102480_11	eggNOG-mapper	877414.ATWA01000019_gene2050	Phage minor structural protein	NA
UHGV-0102480_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0102480_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0102480_11	COG	COG4926	Phage-related protein	NA
UHGV-0102480_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0102480_12	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0102480_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0102480_12	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0102480_13	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0102480_13	UniRef90	UniRef90_V9HUK2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0102480_13	eggNOG-mapper	333138.LQ50_04250	Phage tail tape measure protein	NA
UHGV-0102480_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0102480_13	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0102480_14	eggNOG-mapper	1219626.HMPREF1639_07460	NA	NA
UHGV-0102480_15	Structural annotation	PF17388	NA	NA
UHGV-0102480_16	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0102480_16	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0102480_16	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0102480_17	Structural annotation	PF05657	NA	NA
UHGV-0102480_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0102480_18	UniRef90	UniRef90_UPI00156FE9DA	HK97 gp10 family phage protein	NA
UHGV-0102480_18	eggNOG-mapper	1035189.HMPREF9954_1091	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0102480_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0102480_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0102480_19	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0102480_19	UniRef90	UniRef90_A0A3D1VD59	Phage head-tail adapter protein	NA
UHGV-0102480_19	eggNOG-mapper	596315.HMPREF0634_0222	head-tail adaptor	NA
UHGV-0102480_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0102480_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0102480_20	PHROG	phrog_2550	NA	unknown function
UHGV-0102480_20	eggNOG-mapper	642492.Clole_0745	NA	NA
UHGV-0102480_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0102480_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0102480_21	UniRef90	UniRef90_A0A3D1VAZ0	Phage major capsid protein	NA
UHGV-0102480_21	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0102480_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0102480_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0102480_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0102480_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0102480_22	KOfam	K06904	NA	NA
UHGV-0102480_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0102480_22	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-0102480_22	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0102480_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0102480_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0102480_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0102480_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0102480_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0102480_23	UniRef90	UniRef90_A0A3D1VH02	Phage portal protein	NA
UHGV-0102480_23	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0102480_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0102480_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0102480_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0102480_23	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0102480_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0102480_24	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-0102480_24	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0102480_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0102480_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0102480_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0102480_24	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0102480_25	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0102480_25	UniRef90	UniRef90_E0E1I4	Putative phage terminase, small subunit, P27 family	NA
UHGV-0102480_25	eggNOG-mapper	596315.HMPREF0634_0388	Phage terminase, small subunit	NA
UHGV-0102480_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0102480_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0102480_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0102480_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102480_27	UniRef90	UniRef90_A0A3D1VCB5	Restriction endonuclease	NA
UHGV-0102480_27	eggNOG-mapper	1145276.T479_20000	HNH nucleases	NA
UHGV-0102480_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0102480_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0102480_28	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0102480_28	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0102480_28	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0102480_28	Structural annotation	PF14205	NA	NA
UHGV-0102480_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0102480_29	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0102480_29	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0102480_30	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0102480_30	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0102480_30	UniRef90	UniRef90_A0A6N9P648	Methyltransferase	NA
UHGV-0102480_30	eggNOG-mapper	762982.HMPREF9442_01222	DNA methylase	NA
UHGV-0102480_30	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0102480_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0102480_30	COG	COG0863	DNA modification methylase	NA
UHGV-0102480_30	Structural annotation	PF01170	NA	NA
UHGV-0102480_35	PHROG	phrog_3136	NA	unknown function
UHGV-0102480_35	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0102480_35	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0102480_35	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0102480_35	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0102480_36	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0102480_37	PHROG	phrog_5781	NA	unknown function
UHGV-0102480_37	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0102480_37	eggNOG-mapper	1397284.AYMN01000083_gene2419	NA	NA
UHGV-0102480_37	Pfam	PF14359	NA	DUF4406
UHGV-0102480_37	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0102480_37	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0102480_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0102480_38	PHROG	phrog_27290	NA	unknown function
UHGV-0102480_38	UniRef90	UniRef90_A0A3D1VH09	ParB domain-containing protein	NA
UHGV-0102480_38	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0102480_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0102480_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0102480_38	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0102480_39	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0102480_39	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0102480_39	UniRef90	UniRef90_A0A3D1VAU9	ParA family protein	NA
UHGV-0102480_39	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0102480_39	Pfam	PF13614	AAA domain	AAA_31
UHGV-0102480_39	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0102480_39	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0102480_40	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0102480_40	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0102480_40	UniRef90	UniRef90_UPI000F057FB9	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0102480_40	eggNOG-mapper	748449.Halha_2311	TIGRFAM looped-hinge helix DNA binding domain, AbrB family	NA
UHGV-0102480_40	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0102480_40	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0102480_40	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0102480_40	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0102480_42	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0102480_42	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0102480_42	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0102480_42	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0102480_42	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0102480_42	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0102480_42	COG	COG0305	Replicative DNA helicase	NA
UHGV-0102480_42	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0102480_43	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0102480_43	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-0102480_43	eggNOG-mapper	1297617.JPJD01000031_gene2014	COG NOG34358 non supervised orthologous group	NA
UHGV-0102480_43	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0102480_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0102480_43	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0102480_44	UniRef90	UniRef90_A0A3D1V9Y1	HTH_17 domain-containing protein	NA
UHGV-0102480_44	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0102480_44	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0102480_44	COG	COG1910	Periplasmic molybdate-binding protein/domain	NA
UHGV-0102480_44	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0102480_45	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0102480_45	UniRef90	UniRef90_A0A3D1VA62	Transcriptional regulator	NA
UHGV-0102480_45	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0102480_45	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0102480_45	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0102480_45	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0102480_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0102480_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0102480_46	UniRef90	UniRef90_A0A3D1VD81	XRE family transcriptional regulator	NA
UHGV-0102480_46	eggNOG-mapper	762211.BSTEL_0564	Helix-turn-helix XRE-family like proteins	NA
UHGV-0102480_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102480_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0102480_46	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0102480_47	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0102480_47	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0102480_47	UniRef90	UniRef90_A0A3D1VDF3	LexA family transcriptional regulator	NA
UHGV-0102480_47	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-0102480_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102480_47	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0102480_47	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0102480_47	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0102480_48	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0102480_48	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0102480_48	UniRef90	UniRef90_A0A3D1VB11	Exonuclease domain-containing protein	NA
UHGV-0102480_48	eggNOG-mapper	1408303.JNJJ01000108_gene69	3' exoribonuclease, RNase T-like	NA
UHGV-0102480_48	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0102480_48	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0102480_48	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0102480_48	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0102480_48	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0102480_49	eggNOG-mapper	1232453.BAIF02000097_gene2773	EXOIII	NA
UHGV-0102480_49	COG	COG0272	NAD-dependent DNA ligase	NA