UHGV-0102481

Genome information

Genome length 51,075 bps

CDS count 83

Completeness 98.36% (high-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102481
vOTU ID	vOTU-069111
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_235120
BioSample	SAMEA3708584
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	76.51
Jumbo phage	No

Genome content
Genome length	51,075 bps
GC content	57.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	83
CDS density	91.73%
Average CDS length	568.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102481_1	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0102481_1	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0102481_2	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102481_2	UniRef90	UniRef90_UPI001EFB2B2C	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-0102481_2	eggNOG-mapper	1123239.KB898628_gene3227	NUMOD4 motif	NA
UHGV-0102481_2	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0102481_2	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0102481_3	PHROG	phrog_14030	NA	unknown function
UHGV-0102481_3	UniRef90	UniRef90_UPI001D0A0AA0	peptidoglycan-binding protein	NA
UHGV-0102481_3	eggNOG-mapper	411461.DORFOR_00720	NA	NA
UHGV-0102481_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0102481_3	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0102481_3	Structural annotation	PF01471, PF18342, TIGR02869, TIGR04457, COG4991	NA	NA
UHGV-0102481_4	PHROG	phrog_937	hemolysin	other
UHGV-0102481_5	PHROG	phrog_6918	holin	lysis
UHGV-0102481_5	UniRef90	UniRef90_A0A1C6IFT5	Phage holin, LL-H family	NA
UHGV-0102481_5	eggNOG-mapper	1226322.HMPREF1545_03575	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0102481_5	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0102481_5	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0102481_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0102481_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0102481_8	UniRef90	UniRef90_A0A2V2FT63	HTH cro/C1-type domain-containing protein	NA
UHGV-0102481_8	eggNOG-mapper	416870.llmg_1868	Helix-turn-helix XRE-family like proteins	NA
UHGV-0102481_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102481_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0102481_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0102481_9	Pfam	PF18828	Large polyvalent-protein-associated domain 15	LPD15
UHGV-0102481_11	PHROG	phrog_21718	NA	unknown function
UHGV-0102481_11	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0102481_13	PHROG	phrog_16490	NA	unknown function
UHGV-0102481_13	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0102481_15	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0102481_16	Structural annotation	PF02255	NA	NA
UHGV-0102481_17	KOfam	K14059	int; integrase	NA
UHGV-0102481_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0102481_17	UniRef90	UniRef90_UPI001AA1BF73	tyrosine-type recombinase/integrase	NA
UHGV-0102481_17	eggNOG-mapper	1507.HMPREF0262_00420	Belongs to the 'phage' integrase family	NA
UHGV-0102481_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102481_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102481_17	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0102481_18	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0102481_18	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0102481_18	Structural annotation	TIGR03826	NA	NA
UHGV-0102481_21	UniRef90	UniRef90_A0A1Q6SAI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0102481_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102481_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0102481_23	eggNOG-mapper	1114856.C496_14291	COG0457 FOG TPR repeat	NA
UHGV-0102481_23	Pfam	PF00515	Tetratricopeptide repeat	TPR_1
UHGV-0102481_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0102481_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0102481_24	UniRef90	UniRef90_A0A1Y4GX41	HTH cro/C1-type domain-containing protein	NA
UHGV-0102481_24	eggNOG-mapper	1121324.CLIT_8c01070	transcriptional regulator, XRE family	NA
UHGV-0102481_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102481_24	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0102481_25	UniRef90	UniRef90_A0A357NGY1	XRE family transcriptional regulator	NA
UHGV-0102481_25	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0102481_26	PHROG	phrog_14088	NA	unknown function
UHGV-0102481_26	UniRef90	UniRef90_UPI001D07CB3C	carboxypeptidase	NA
UHGV-0102481_26	eggNOG-mapper	642492.Clole_1841	NA	NA
UHGV-0102481_27	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102481_27	UniRef90	UniRef90_N1ZZ26	NA	NA
UHGV-0102481_27	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-0102481_27	Pfam	PF13643	NA	DUF4145
UHGV-0102481_27	Structural annotation	PF13643	NA	NA
UHGV-0102481_30	Pfam	PF05339	NA	DUF739
UHGV-0102481_30	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0102481_30	Structural annotation	PF05339, TIGR00673, COG1476	NA	NA
UHGV-0102481_34	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102481_34	UniRef90	UniRef90_A0A3E4TNU7	Endonuclease	NA
UHGV-0102481_34	eggNOG-mapper	411902.CLOBOL_00693	YqaJ-like viral recombinase domain	NA
UHGV-0102481_34	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0102481_34	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0102481_34	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0102481_34	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0102481_35	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0102481_35	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0102481_35	UniRef90	UniRef90_UPI00098877A9	recombination protein RecT	NA
UHGV-0102481_35	eggNOG-mapper	1352230.S6AVW6_9CAUD	DNA metabolic process	NA
UHGV-0102481_35	Pfam	PF03837	RecT family	RecT
UHGV-0102481_35	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0102481_35	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0102481_36	Structural annotation	PF21715, TIGR00122, COG1654	NA	NA
UHGV-0102481_37	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0102481_37	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0102481_37	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0102481_38	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0102481_38	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0102481_38	UniRef90	UniRef90_UPI0009317C7B	NA	NA
UHGV-0102481_38	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0102481_38	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0102481_38	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0102481_38	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0102481_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0102481_38	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0102481_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0102481_39	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0102481_39	UniRef90	UniRef90_A0A844DBG8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0102481_39	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0102481_39	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0102481_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0102481_39	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0102481_40	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102481_40	eggNOG-mapper	1460640.JCM19046_3498	NA	NA
UHGV-0102481_40	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0102481_41	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0102481_41	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0102481_51	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0102481_51	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-0102481_51	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0102481_52	PHROG	phrog_924	NA	unknown function
UHGV-0102481_52	UniRef90	UniRef90_A0A2I7QK65	NA	NA
UHGV-0102481_52	eggNOG-mapper	667121.ET1_08_00780	NA	NA
UHGV-0102481_52	Pfam	PF04448	NA	DUF551
UHGV-0102481_52	Structural annotation	NF041588	NA	NA
UHGV-0102481_53	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0102481_53	UniRef90	UniRef90_A0A285D7X4	Phage N-6-adenine-methyltransferase	NA
UHGV-0102481_53	eggNOG-mapper	1450694.BTS2_0497	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0102481_53	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0102481_53	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0102481_53	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0102481_54	PHROG	phrog_3392	NA	unknown function
UHGV-0102481_54	eggNOG-mapper	1126950.G9J1S7_9CAUD	NA	NA
UHGV-0102481_57	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0102481_57	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0102481_57	UniRef90	UniRef90_A0A3D2CNF7	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0102481_57	eggNOG-mapper	1291050.JAGE01000001_gene2907	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0102481_57	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0102481_57	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0102481_57	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0102481_58	PHROG	phrog_6721	NA	unknown function
UHGV-0102481_58	eggNOG-mapper	411473.RUMCAL_00916	NA	NA
UHGV-0102481_58	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0102481_59	PHROG	phrog_6568	NA	unknown function
UHGV-0102481_60	Structural annotation	PF18892	NA	NA
UHGV-0102481_61	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0102481_61	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0102481_61	UniRef90	UniRef90_A0A8I2KTY3	Helix-turn-helix domain-containing protein	NA
UHGV-0102481_61	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0102481_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102481_61	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0102481_61	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0102481_62	PHROG	phrog_11237	NA	unknown function
UHGV-0102481_62	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0102481_64	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0102481_64	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0102481_64	UniRef90	UniRef90_A0A357AZP5	PBSX family phage terminase large subunit	NA
UHGV-0102481_64	eggNOG-mapper	445972.ANACOL_01839	Phage terminase, large subunit, PBSX family	NA
UHGV-0102481_64	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0102481_64	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0102481_64	NCBIFam	TIGR01445.1	intein N-terminal splicing region	NA
UHGV-0102481_64	COG	COG1783	Phage terminase large subunit	NA
UHGV-0102481_65	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0102481_65	UniRef90	UniRef90_UPI00164C574E	DNA adenine methylase	NA
UHGV-0102481_65	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0102481_65	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0102481_65	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0102481_65	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-0102481_66	PHROG	phrog_28563	NA	unknown function
UHGV-0102481_66	UniRef90	UniRef90_A0A357B187	INTEIN_C_TER domain-containing protein	NA
UHGV-0102481_66	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0102481_67	PHROG	phrog_64	portal protein	head and packaging
UHGV-0102481_67	UniRef90	UniRef90_UPI0005CCEBF9	phage portal protein	NA
UHGV-0102481_67	eggNOG-mapper	1280689.AUJC01000003_gene963	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0102481_67	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0102481_67	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0102481_67	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0102481_68	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0102481_68	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0102481_68	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0102481_68	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0102481_68	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0102481_68	COG	COG2369	NA	NA
UHGV-0102481_70	PHROG	phrog_1233	NA	unknown function
UHGV-0102481_70	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0102481_70	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0102481_71	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0102481_71	UniRef90	UniRef90_UPI0011593FAC	NA	NA
UHGV-0102481_71	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-0102481_71	Pfam	PF14265	NA	DUF4355
UHGV-0102481_71	Structural annotation	PF14265	NA	NA
UHGV-0102481_72	PHROG	phrog_283	major head protein	head and packaging
UHGV-0102481_72	UniRef90	UniRef90_A0A1C6I0L7	p22 coat protein-gene protein 5	NA
UHGV-0102481_72	eggNOG-mapper	1499683.CCFF01000014_gene3908	P22 coat protein - gene protein 5	NA
UHGV-0102481_72	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0102481_72	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0102481_74	Pfam	PF20536	NA	DUF6751
UHGV-0102481_74	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0102481_75	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0102481_75	UniRef90	UniRef90_UPI000930E2B9	minor capsid protein	NA
UHGV-0102481_75	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0102481_75	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0102481_75	Structural annotation	PF11114	NA	NA
UHGV-0102481_76	PHROG	phrog_3266	tail completion	connector
UHGV-0102481_76	eggNOG-mapper	1321782.HMPREF1986_02272	NA	NA
UHGV-0102481_76	Structural annotation	PF12691	NA	NA
UHGV-0102481_77	PHROG	phrog_3099	NA	unknown function
UHGV-0102481_77	eggNOG-mapper	1539298.JO41_08150	NA	NA
UHGV-0102481_77	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0102481_78	PHROG	phrog_706	NA	unknown function
UHGV-0102481_78	UniRef90	UniRef90_UPI00156EC658	Gp15 family bacteriophage protein	NA
UHGV-0102481_78	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-0102481_78	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0102481_78	Structural annotation	PF06854	NA	NA
UHGV-0102481_79	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0102481_79	UniRef90	UniRef90_A0A316MA27	Phage tail protein (Fragment)	NA
UHGV-0102481_79	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0102481_79	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0102481_79	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0102481_80	UniRef90	UniRef90_A0A4P8MNL8	GIY-YIG domain-containing protein	NA
UHGV-0102481_80	eggNOG-mapper	883156.HMPREF9282_00521	NA	NA
UHGV-0102481_81	PHROG	phrog_1204	tail protein	tail
UHGV-0102481_81	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0102481_81	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0102481_82	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0102481_82	UniRef90	UniRef90_UPI001AA8923D	phage tail family protein	NA
UHGV-0102481_82	eggNOG-mapper	748727.CLJU_c03670	tail component	NA
UHGV-0102481_82	COG	COG4722	Phage-related protein YomH	NA
UHGV-0102481_82	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0102481_83	PHROG	phrog_13289	tail protein	tail
UHGV-0102481_83	UniRef90	UniRef90_Q97MX7	Phage-related protein	NA
UHGV-0102481_83	eggNOG-mapper	64186.O64284_9CAUD	peptidoglycan catabolic process	NA
UHGV-0102481_83	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0102481_83	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0102481_83	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0102481_83	Structural annotation	PF14594, PF03422, PF00629, PF13157, PF03211, TIGR01665, NF040827, COG4926	NA	NA