UHGV-0102496

Genome information

Genome length 32,731 bps

CDS count 54

Completeness 97.19% (high-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102496
vOTU ID	vOTU-060109
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_225074
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.19% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.59
Jumbo phage	No

Genome content
Genome length	32,731 bps
GC content	40.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	89.34%
Average CDS length	546.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102496_1	PHROG	phrog_12931	NA	unknown function
UHGV-0102496_1	eggNOG-mapper	1280698.AUJS01000007_gene1052	NA	NA
UHGV-0102496_2	PHROG	phrog_9994	NA	unknown function
UHGV-0102496_2	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0102496_2	eggNOG-mapper	411461.DORFOR_00732	NA	NA
UHGV-0102496_2	Structural annotation	PF20747	NA	NA
UHGV-0102496_3	PHROG	phrog_538	minor tail protein	tail
UHGV-0102496_3	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0102496_3	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-0102496_3	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0102496_3	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0102496_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0102496_4	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0102496_4	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0102496_5	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0102496_5	UniRef90	UniRef90_A0A374BV79	PhageMin_Tail domain-containing protein	NA
UHGV-0102496_5	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0102496_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0102496_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0102496_5	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0102496_6	PHROG	phrog_706	NA	unknown function
UHGV-0102496_6	UniRef90	UniRef90_UPI0008360889	Gp15 family bacteriophage protein	NA
UHGV-0102496_6	eggNOG-mapper	428125.CLOLEP_00176	Bacteriophage Gp15 protein	NA
UHGV-0102496_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0102496_6	Structural annotation	PF06854	NA	NA
UHGV-0102496_7	Structural annotation	PF10666	NA	NA
UHGV-0102496_8	PHROG	phrog_820	major tail protein	tail
UHGV-0102496_8	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0102496_8	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0102496_8	COG	COG5492	NA	NA
UHGV-0102496_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0102496_9	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0102496_9	Structural annotation	PF12691	NA	NA
UHGV-0102496_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0102496_10	UniRef90	UniRef90_UPI0015F726FA	minor capsid protein	NA
UHGV-0102496_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0102496_10	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0102496_11	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0102496_11	UniRef90	UniRef90_UPI001915CA83	putative minor capsid protein	NA
UHGV-0102496_11	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-0102496_11	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0102496_11	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0102496_11	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0102496_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0102496_12	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0102496_12	eggNOG-mapper	665959.HMPREF1013_00198	NA	NA
UHGV-0102496_13	PHROG	phrog_267	major head protein	head and packaging
UHGV-0102496_13	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0102496_13	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0102496_13	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0102496_14	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0102496_15	KOfam	K07584	NA	NA
UHGV-0102496_15	PHROG	phrog_4478	peptidase	other
UHGV-0102496_15	UniRef90	UniRef90_A0A3E4ME95	Ribosomal-processing cysteine protease Prp	NA
UHGV-0102496_15	eggNOG-mapper	1235792.C808_04675	Cysteine protease Prp	NA
UHGV-0102496_15	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0102496_15	COG	COG2868	NA	NA
UHGV-0102496_15	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0102496_16	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-0102496_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0102496_17	UniRef90	UniRef90_UPI000C7906A1	phage minor capsid protein	NA
UHGV-0102496_17	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0102496_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0102496_17	COG	COG2369	NA	NA
UHGV-0102496_17	Structural annotation	PF06152	NA	NA
UHGV-0102496_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0102496_18	UniRef90	UniRef90_A0A374BVV6	Phage portal protein	NA
UHGV-0102496_18	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0102496_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0102496_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0102496_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0102496_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0102496_19	UniRef90	UniRef90_A0A395YD55	PBSX family phage terminase large subunit	NA
UHGV-0102496_19	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0102496_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0102496_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0102496_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0102496_19	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0102496_20	PHROG	phrog_2412	NA	unknown function
UHGV-0102496_20	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0102496_20	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0102496_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0102496_22	UniRef90	UniRef90_A0A3D3U8Q6	Sigma70_r4 domain-containing protein	NA
UHGV-0102496_22	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0102496_22	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0102496_24	PHROG	phrog_20593	NA	unknown function
UHGV-0102496_25	UniRef90	UniRef90_A0A396QA88	NA	NA
UHGV-0102496_25	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0102496_25	Pfam	PF04448	NA	DUF551
UHGV-0102496_25	Structural annotation	NF041588	NA	NA
UHGV-0102496_26	PHROG	phrog_17690	NA	unknown function
UHGV-0102496_26	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0102496_26	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0102496_28	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0102496_28	UniRef90	UniRef90_R6S5E8	NA	NA
UHGV-0102496_28	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0102496_28	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0102496_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0102496_28	Structural annotation	PF14297	NA	NA
UHGV-0102496_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0102496_29	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0102496_29	UniRef90	UniRef90_UPI001D0408BC	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0102496_29	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0102496_29	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0102496_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0102496_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0102496_30	PHROG	phrog_1029	NA	unknown function
UHGV-0102496_30	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0102496_30	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0102496_31	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0102496_31	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0102496_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0102496_32	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0102496_32	UniRef90	UniRef90_UPI00164A2200	recombinase RecT	NA
UHGV-0102496_32	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0102496_32	Pfam	PF03837	RecT family	RecT
UHGV-0102496_32	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0102496_32	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0102496_32	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0102496_33	PHROG	phrog_674	NA	unknown function
UHGV-0102496_33	UniRef90	UniRef90_UPI00195E7F83	NA	NA
UHGV-0102496_33	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0102496_33	Pfam	PF07083	NA	DUF1351
UHGV-0102496_33	Structural annotation	PF07083	NA	NA
UHGV-0102496_34	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102496_34	UniRef90	UniRef90_A0A1Q6PRD9	Recombinase	NA
UHGV-0102496_34	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0102496_34	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0102496_34	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0102496_34	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0102496_34	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0102496_39	UniRef90	UniRef90_A0A1Q6J9H1	HTH cro/C1-type domain-containing protein	NA
UHGV-0102496_39	Structural annotation	PF21291, NF041951, COG1513	NA	NA
UHGV-0102496_40	Structural annotation	PF09827, MF_01471, COG1343	NA	NA
UHGV-0102496_42	PHROG	phrog_3240	NA	unknown function
UHGV-0102496_42	eggNOG-mapper	1158607.UAU_01711	NA	NA
UHGV-0102496_43	eggNOG-mapper	1095750.HMPREF9970_1010	NA	NA
UHGV-0102496_45	PHROG	phrog_9188	NA	unknown function
UHGV-0102496_45	Structural annotation	PF11023	NA	NA
UHGV-0102496_47	UniRef90	UniRef90_A0A3E4F4X5	XRE family transcriptional regulator	NA
UHGV-0102496_47	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0102496_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102496_47	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0102496_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0102496_48	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0102496_48	UniRef90	UniRef90_A0A3E4ME57	XRE family transcriptional regulator	NA
UHGV-0102496_48	eggNOG-mapper	97139.C824_00466	Peptidase S24-like	NA
UHGV-0102496_48	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0102496_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102496_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0102496_48	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0102496_49	PHROG	phrog_87	metallo-protease	other
UHGV-0102496_49	UniRef90	UniRef90_A0A3E4MEG4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0102496_49	eggNOG-mapper	411461.DORFOR_00033	IrrE N-terminal-like domain	NA
UHGV-0102496_49	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0102496_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0102496_49	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0102496_50	PHROG	phrog_38135	NA	unknown function
UHGV-0102496_50	UniRef90	UniRef90_UPI001A9A5F68	NA	NA
UHGV-0102496_50	eggNOG-mapper	742723.HMPREF9477_00941	dextransucrase activity	NA
UHGV-0102496_50	Pfam	PF14020	NA	DUF4236
UHGV-0102496_50	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0102496_50	Structural annotation	PF14020, PF21602	NA	NA
UHGV-0102496_51	PHROG	phrog_16228	NA	unknown function
UHGV-0102496_51	UniRef90	UniRef90_R5XN62	Uma2 domain-containing protein	NA
UHGV-0102496_51	eggNOG-mapper	500632.CLONEX_01584	Putative restriction endonuclease	NA
UHGV-0102496_51	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0102496_51	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0102496_51	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0102496_52	KOfam	K14059	int; integrase	NA
UHGV-0102496_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0102496_52	UniRef90	UniRef90_A0A374BUR5	Site-specific integrase	NA
UHGV-0102496_52	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0102496_52	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0102496_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102496_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102496_52	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0102496_53	eggNOG-mapper	33035.JPJF01000072_gene4392	NA	NA
UHGV-0102496_53	COG	COG3843	Type IV secretory pathway, VirD2 component (relaxase)	NA
UHGV-0102496_54	eggNOG-mapper	742765.HMPREF9457_01634	CAAX protease self-immunity	NA
UHGV-0102496_54	COG	COG1266	Membrane protease YdiL, CAAX protease family	NA