UHGV-0102679

Genome information

Genome length 59,013 bps

CDS count 72

Completeness 94.43% (high-quality)

geNomad score 0.9708

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102679
vOTU ID	vOTU-063960
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_226096
BioSample	SAMEA3708638
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.43% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9708
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.5
Jumbo phage	No

Genome content
Genome length	59,013 bps
GC content	50.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	93.24%
Average CDS length	767.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102679_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0102679_1	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0102679_1	UniRef90	UniRef90_A0A2S0M989	Phage antirepressor protein	NA
UHGV-0102679_1	eggNOG-mapper	293826.Amet_0841	Phage antirepressor protein	NA
UHGV-0102679_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0102679_1	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0102679_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0102679_1	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0102679_2	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0102679_2	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0102679_3	PHROG	phrog_25045	NA	unknown function
UHGV-0102679_3	UniRef90	UniRef90_A0A2S0M9C6	LysM domain-containing protein	NA
UHGV-0102679_3	eggNOG-mapper	1380354.JIAN01000007_gene84	PFAM Peptidoglycan-binding lysin domain	NA
UHGV-0102679_3	Pfam	PF01476	LysM domain	LysM
UHGV-0102679_3	COG	COG1388	LysM repeat	NA
UHGV-0102679_3	Structural annotation	PF01476, MF_02014, NF010723	NA	NA
UHGV-0102679_4	Structural annotation	PF20892	NA	NA
UHGV-0102679_5	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0102679_5	UniRef90	UniRef90_UPI001472A545	siphovirus Gp157 family protein	NA
UHGV-0102679_5	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0102679_5	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0102679_5	Structural annotation	PF05565	NA	NA
UHGV-0102679_6	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0102679_6	UniRef90	UniRef90_UPI00147348AC	ERF family protein	NA
UHGV-0102679_6	eggNOG-mapper	525919.Apre_0805	ERF superfamily	NA
UHGV-0102679_6	Pfam	PF04404	ERF superfamily	ERF
UHGV-0102679_6	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0102679_7	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0102679_7	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0102679_7	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0102679_8	PHROG	phrog_1934	NA	unknown function
UHGV-0102679_8	UniRef90	UniRef90_UPI001957D237	zinc-finger-containing protein	NA
UHGV-0102679_8	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-0102679_8	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0102679_9	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0102679_9	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102679_9	UniRef90	UniRef90_UPI001980A387	HNH endonuclease	NA
UHGV-0102679_9	eggNOG-mapper	547559.Nmag_0239	HNH endonuclease	NA
UHGV-0102679_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0102679_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0102679_9	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0102679_10	PHROG	phrog_15768	NA	unknown function
UHGV-0102679_10	UniRef90	UniRef90_A0A2S0M9A1	Helix-turn-helix domain-containing protein	NA
UHGV-0102679_10	eggNOG-mapper	1232428.CAVO010000067_gene439	NA	NA
UHGV-0102679_10	Structural annotation	PF13730, MF_01819, NF038251, COG1846	NA	NA
UHGV-0102679_11	Structural annotation	PF11417	NA	NA
UHGV-0102679_12	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0102679_13	PHROG	phrog_37395	NA	unknown function
UHGV-0102679_14	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0102679_14	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0102679_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0102679_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102679_15	UniRef90	UniRef90_A0A2S0M9E2	Single-stranded DNA-binding protein	NA
UHGV-0102679_15	eggNOG-mapper	1232428.CAVO010000067_gene437	single-stranded DNA binding	NA
UHGV-0102679_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0102679_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0102679_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0102679_16	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0102679_16	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102679_16	UniRef90	UniRef90_A0A2S0M9B9	HU family DNA-binding protein	NA
UHGV-0102679_16	eggNOG-mapper	1173029.JH980292_gene2745	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0102679_16	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0102679_16	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0102679_16	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA
UHGV-0102679_17	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0102679_17	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0102679_17	UniRef90	UniRef90_A0A2S0MAB6	dUTP diphosphatase	NA
UHGV-0102679_17	eggNOG-mapper	706434.HMPREF9429_00398	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0102679_17	Pfam	PF00692	dUTPase	dUTPase
UHGV-0102679_17	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0102679_17	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0102679_18	Structural annotation	PF02482, TIGR00741, COG1544	NA	NA
UHGV-0102679_19	UniRef90	UniRef90_S7HSH7	NA	NA
UHGV-0102679_19	eggNOG-mapper	1273103.NM10_02357	Protein conserved in bacteria	NA
UHGV-0102679_19	Pfam	PF07866	NA	DUF1653
UHGV-0102679_19	COG	COG4728	NA	NA
UHGV-0102679_19	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0102679_20	PHROG	phrog_236	nucleotide kinase	other
UHGV-0102679_20	UniRef90	UniRef90_A0A2S0MAB1	NA	NA
UHGV-0102679_20	eggNOG-mapper	706434.HMPREF9429_00388	NA	NA
UHGV-0102679_20	Pfam	PF11753	NA	DUF3310
UHGV-0102679_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0102679_22	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0102679_22	UniRef90	UniRef90_A0A2S0M9F1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0102679_22	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-0102679_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0102679_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0102679_26	PHROG	phrog_98	NA	unknown function
UHGV-0102679_26	UniRef90	UniRef90_A0A2S0M9I6	YopX domain-containing protein	NA
UHGV-0102679_26	eggNOG-mapper	888055.HMPREF9015_01088	YopX protein	NA
UHGV-0102679_26	Pfam	PF09643	YopX protein	YopX
UHGV-0102679_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0102679_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0102679_28	Structural annotation	PF07867, MF_01302_B, NF001109	NA	NA
UHGV-0102679_31	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102679_31	UniRef90	UniRef90_A0A2S0M9E4	HNH endonuclease	NA
UHGV-0102679_31	eggNOG-mapper	585503.HMPREF7545_1722	HNH endonuclease	NA
UHGV-0102679_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0102679_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0102679_35	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0102679_35	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0102679_35	UniRef90	UniRef90_A0A2S0M9C7	Cytidine deaminase	NA
UHGV-0102679_35	eggNOG-mapper	693746.OBV_35660	MafB19-like deaminase	NA
UHGV-0102679_35	PADLOC	dCTPase	NA	NA
UHGV-0102679_35	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0102679_35	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0102679_35	Structural annotation	PF00383, TIGR02571, COG2131	NA	NA
UHGV-0102679_36	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0102679_36	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0102679_37	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0102679_37	eggNOG-mapper	158190.SpiGrapes_2456	radical SAM domain protein	NA
UHGV-0102679_37	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0102679_37	Structural annotation	MF_01865, NF038361, COG0621	NA	NA
UHGV-0102679_38	PHROG	phrog_16123	NA	unknown function
UHGV-0102679_38	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0102679_42	Structural annotation	PF20075, TIGR02612	NA	NA
UHGV-0102679_43	UniRef90	UniRef90_UPI0008E3B79D	ParB N-terminal domain-containing protein	NA
UHGV-0102679_43	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0102679_44	PHROG	phrog_14350	NA	unknown function
UHGV-0102679_44	UniRef90	UniRef90_F7NK80	NA	NA
UHGV-0102679_44	eggNOG-mapper	679201.HMPREF9334_00497	NA	NA
UHGV-0102679_45	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102679_45	UniRef90	UniRef90_A0A6I2QM54	HNH endonuclease	NA
UHGV-0102679_45	eggNOG-mapper	879308.HMPREF9130_0377	NA	NA
UHGV-0102679_45	Structural annotation	PF00847	NA	NA
UHGV-0102679_46	Structural annotation	PF07867	NA	NA
UHGV-0102679_47	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0102679_47	UniRef90	UniRef90_A0A2S0M9J8	Transposase	NA
UHGV-0102679_47	eggNOG-mapper	1118057.CAGX01000020_gene1623	transposase activity	NA
UHGV-0102679_47	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0102679_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0102679_48	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0102679_48	UniRef90	UniRef90_A0A1F8V9T6	Terminase_3 domain-containing protein	NA
UHGV-0102679_48	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-0102679_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0102679_48	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0102679_49	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0102679_49	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0102679_49	eggNOG-mapper	1232428.CAVO010000067_gene425	Membrane	NA
UHGV-0102679_49	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0102679_49	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0102679_51	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0102679_52	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0102679_52	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-0102679_52	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-0102679_52	Pfam	PF17236	NA	DUF5309
UHGV-0102679_52	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0102679_54	Structural annotation	PF20387	NA	NA
UHGV-0102679_55	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0102679_55	Structural annotation	PF20387	NA	NA
UHGV-0102679_56	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-0102679_56	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0102679_56	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-0102679_57	PHROG	phrog_5417	NA	unknown function
UHGV-0102679_57	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-0102679_57	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-0102679_57	Structural annotation	PF12571	NA	NA
UHGV-0102679_58	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-0102679_58	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0102679_59	PHROG	phrog_5717	tail protein	tail
UHGV-0102679_59	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0102679_59	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0102679_59	COG	COG4675	Phage tail collar domain	NA
UHGV-0102679_61	eggNOG-mapper	1232428.CAVO010000067_gene418	NA	NA
UHGV-0102679_61	Structural annotation	PF14301	NA	NA
UHGV-0102679_62	PHROG	phrog_6465	tail protein	tail
UHGV-0102679_62	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0102679_62	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-0102679_62	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0102679_63	KOfam	K14059	int; integrase	NA
UHGV-0102679_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0102679_63	UniRef90	UniRef90_UPI0004143D65	tyrosine-type recombinase/integrase	NA
UHGV-0102679_63	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0102679_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102679_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102679_63	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0102679_65	PHROG	phrog_28789	NA	unknown function
UHGV-0102679_65	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-0102679_65	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-0102679_66	PHROG	phrog_34863	NA	unknown function
UHGV-0102679_66	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-0102679_66	eggNOG-mapper	1273103.NM10_00929	LysM domain	NA
UHGV-0102679_66	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0102679_66	COG	COG1388	LysM repeat	NA
UHGV-0102679_66	Structural annotation	PF21277	NA	NA
UHGV-0102679_67	UniRef90	UniRef90_S7HTA2	TarH domain-containing protein	NA
UHGV-0102679_68	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-0102679_68	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0102679_69	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0102679_70	UniRef90	UniRef90_UPI00047F33D6	Hint domain-containing protein	NA
UHGV-0102679_70	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0102679_70	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0102679_70	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0102679_72	PHROG	phrog_10691	NA	unknown function
UHGV-0102679_72	UniRef90	UniRef90_UPI0014728F49	transglycosylase SLT domain-containing protein	NA
UHGV-0102679_72	eggNOG-mapper	1232428.CAVO010000067_gene414	Type III restriction enzyme, res subunit	NA
UHGV-0102679_72	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0102679_72	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0102679_72	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0102679_72	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0102679_72	Pfam	PF05175	Methyltransferase small domain	MTS
UHGV-0102679_72	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0102679_72	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA