UHGV-0102708

Genome information

Genome length 28,576 bps

CDS count 52

Completeness 81.73% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102708
vOTU ID	vOTU-018220
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_234381
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.94
Jumbo phage	No

Genome content
Genome length	28,576 bps
GC content	59.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.00%
Average CDS length	511.50 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102708_1	PHROG	phrog_199	holin	lysis
UHGV-0102708_1	UniRef90	UniRef90_A0A2A6ZGX7	Holin	NA
UHGV-0102708_1	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0102708_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0102708_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0102708_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0102708_1	Structural annotation	PF05105, COG4824	NA	NA
UHGV-0102708_2	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0102708_2	PHROG	phrog_894	endolysin	lysis
UHGV-0102708_2	UniRef90	UniRef90_A0A1C5NY12	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-0102708_2	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0102708_2	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0102708_2	COG	COG3108	NA	NA
UHGV-0102708_2	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0102708_3	PHROG	phrog_2310	NA	unknown function
UHGV-0102708_4	PHROG	phrog_9534	head protein	head and packaging
UHGV-0102708_4	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0102708_4	Structural annotation	PF21567	NA	NA
UHGV-0102708_5	PHROG	phrog_538	minor tail protein	tail
UHGV-0102708_5	UniRef90	UniRef90_UPI001C0C4E4F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0102708_5	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0102708_5	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0102708_5	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0102708_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0102708_6	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0102708_6	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0102708_6	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0102708_7	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0102708_7	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0102708_7	COG	COG1511	NA	NA
UHGV-0102708_8	Structural annotation	PF17318	NA	NA
UHGV-0102708_9	PHROG	phrog_1526	NA	unknown function
UHGV-0102708_9	UniRef90	UniRef90_F3MWB0	NA	NA
UHGV-0102708_10	PHROG	phrog_117	major tail protein	tail
UHGV-0102708_10	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0102708_10	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0102708_10	COG	COG5492	NA	NA
UHGV-0102708_10	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0102708_11	PHROG	phrog_123	tail terminator	connector
UHGV-0102708_11	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0102708_11	Structural annotation	PF06141	NA	NA
UHGV-0102708_12	PHROG	phrog_387	neck protein	connector
UHGV-0102708_12	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0102708_13	PHROG	phrog_501	head closure Hc1	connector
UHGV-0102708_13	UniRef90	UniRef90_R6CEU4	NA	NA
UHGV-0102708_13	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0102708_13	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0102708_14	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0102708_14	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0102708_14	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0102708_14	Structural annotation	PF09355	NA	NA
UHGV-0102708_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0102708_15	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0102708_15	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0102708_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0102708_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0102708_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0102708_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0102708_16	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0102708_16	UniRef90	UniRef90_UPI001C03A2F1	NA	NA
UHGV-0102708_16	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-0102708_16	Structural annotation	PF14265	NA	NA
UHGV-0102708_17	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0102708_17	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0102708_17	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0102708_18	PHROG	phrog_34144	NA	unknown function
UHGV-0102708_18	eggNOG-mapper	936596.HMPREF1495_0343	NA	NA
UHGV-0102708_19	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0102708_19	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0102708_19	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0102708_19	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0102708_20	PHROG	phrog_104	portal protein	head and packaging
UHGV-0102708_20	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0102708_20	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0102708_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0102708_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0102708_21	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0102708_21	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0102708_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0102708_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0102708_21	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0102708_22	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0102708_22	Structural annotation	PF19962	NA	NA
UHGV-0102708_23	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102708_23	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0102708_23	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0102708_23	Structural annotation	PF01844	NA	NA
UHGV-0102708_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0102708_24	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0102708_24	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0102708_24	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0102708_24	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0102708_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0102708_25	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0102708_25	UniRef90	UniRef90_A0A2V2GM11	Methyltransferase	NA
UHGV-0102708_25	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0102708_25	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0102708_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0102708_25	COG	COG0863	DNA modification methylase	NA
UHGV-0102708_25	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0102708_27	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0102708_27	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0102708_27	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0102708_27	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0102708_27	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0102708_27	COG	COG0305	Replicative DNA helicase	NA
UHGV-0102708_27	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0102708_28	PHROG	phrog_15768	NA	unknown function
UHGV-0102708_28	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0102708_28	eggNOG-mapper	755732.Fluta_1691	NA	NA
UHGV-0102708_28	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0102708_28	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0102708_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0102708_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102708_29	UniRef90	UniRef90_A0A3E2U1Y5	Single-stranded DNA-binding protein	NA
UHGV-0102708_29	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0102708_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0102708_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0102708_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0102708_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0102708_29	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0102708_30	PHROG	phrog_7566	NA	unknown function
UHGV-0102708_30	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0102708_33	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0102708_33	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0102708_33	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0102708_34	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0102708_34	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0102708_35	Structural annotation	NF033787	NA	NA
UHGV-0102708_40	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0102708_42	UniRef90	UniRef90_A0A2A7BGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0102708_42	Pfam	PF05339	NA	DUF739
UHGV-0102708_42	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0102708_42	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0102708_44	PHROG	phrog_3777	NA	unknown function
UHGV-0102708_44	UniRef90	UniRef90_A0A396LZ12	NA	NA
UHGV-0102708_44	Pfam	PF12957	NA	DUF3846
UHGV-0102708_44	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0102708_44	Structural annotation	PF12957	NA	NA
UHGV-0102708_45	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0102708_51	UniRef90	UniRef90_A0A1Y3WR65	Transcriptional regulator	NA
UHGV-0102708_51	eggNOG-mapper	279010.BL00668	Helix-turn-helix XRE-family like proteins	NA
UHGV-0102708_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102708_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0102708_51	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0102708_52	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0102708_52	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0102708_52	UniRef90	UniRef90_A0A1Y3WR87	Repressor LexA	NA
UHGV-0102708_52	eggNOG-mapper	718252.FP2_25580	NA	NA
UHGV-0102708_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0102708_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102708_52	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0102708_52	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0102708_52	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA