UHGV-0102720

Genome information

Genome length 52,876 bps

CDS count 82

Completeness 94.02% (high-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102720
vOTU ID	vOTU-062863
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_224760
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.02% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.59
Jumbo phage	No

Genome content
Genome length	52,876 bps
GC content	38.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	82
CDS density	88.47%
Average CDS length	573.62 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102720_1	PHROG	phrog_2384	NA	unknown function
UHGV-0102720_1	UniRef90	UniRef90_UPI001B8BFE22	P63C domain-containing protein	NA
UHGV-0102720_1	eggNOG-mapper	910313.HMPREF9320_0988	P63C domain	NA
UHGV-0102720_1	Pfam	PF10546	P63C domain	P63C
UHGV-0102720_1	Structural annotation	PF10546, COG3617	NA	NA
UHGV-0102720_2	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0102720_2	PHROG	phrog_8036	NA	unknown function
UHGV-0102720_2	UniRef90	UniRef90_A0A0F5JGS9	Bro-N domain-containing protein	NA
UHGV-0102720_2	eggNOG-mapper	1122931.AUAE01000026_gene2517	BRO family, N-terminal domain	NA
UHGV-0102720_2	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0102720_2	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0102720_3	UniRef90	UniRef90_UPI000B3902C0	helix-turn-helix domain-containing protein	NA
UHGV-0102720_3	eggNOG-mapper	1123058.KB894217_gene645	Transcriptional regulator	NA
UHGV-0102720_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102720_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0102720_4	eggNOG-mapper	357276.EL88_11570	NA	NA
UHGV-0102720_10	PHROG	phrog_11747	NA	unknown function
UHGV-0102720_10	UniRef90	UniRef90_UPI000E5335B6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0102720_10	eggNOG-mapper	1189619.pgond44_00745	Serine dehydrogenase proteinase	NA
UHGV-0102720_10	Pfam	PF01972	Serine dehydrogenase proteinase	SDH_sah
UHGV-0102720_10	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0102720_10	Structural annotation	PF01972, MF_00444, TIGR00706, COG0740	NA	NA
UHGV-0102720_11	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0102720_11	UniRef90	UniRef90_UPI0018981153	ERF family protein	NA
UHGV-0102720_11	eggNOG-mapper	1236514.BAKL01000015_gene1652	Erf family	NA
UHGV-0102720_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-0102720_11	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0102720_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0102720_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102720_13	UniRef90	UniRef90_UPI000D8D1D9C	single-stranded DNA-binding protein	NA
UHGV-0102720_13	eggNOG-mapper	926569.ANT_21880	single-stranded DNA binding	NA
UHGV-0102720_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0102720_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0102720_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0102720_13	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0102720_15	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0102720_15	UniRef90	UniRef90_UPI000D8884BC	NA	NA
UHGV-0102720_15	eggNOG-mapper	742767.HMPREF9456_02058	NA	NA
UHGV-0102720_15	Pfam	PF07105	NA	DUF1367
UHGV-0102720_15	Structural annotation	PF07105	NA	NA
UHGV-0102720_18	PHROG	phrog_19572	NA	unknown function
UHGV-0102720_18	UniRef90	UniRef90_A0A412WQ50	NA	NA
UHGV-0102720_18	eggNOG-mapper	709991.Odosp_1960	Phage tail protein	NA
UHGV-0102720_18	Pfam	PF14902	NA	DUF4494
UHGV-0102720_18	Structural annotation	PF14902	NA	NA
UHGV-0102720_19	PHROG	phrog_11581	NA	unknown function
UHGV-0102720_19	eggNOG-mapper	457424.BFAG_02391	NA	NA
UHGV-0102720_20	PHROG	phrog_11581	NA	unknown function
UHGV-0102720_20	eggNOG-mapper	1506583.JQJY01000003_gene3423	NA	NA
UHGV-0102720_22	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0102720_22	UniRef90	UniRef90_UPI000E4B34D6	Rha family transcriptional regulator	NA
UHGV-0102720_22	eggNOG-mapper	1392486.JIAF01000004_gene847	Phage regulatory protein	NA
UHGV-0102720_22	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0102720_22	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0102720_22	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0102720_22	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0102720_23	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102720_23	UniRef90	UniRef90_UPI000D937A31	MazG-like family protein	NA
UHGV-0102720_23	eggNOG-mapper	699218.HMPREF0889_0311	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0102720_23	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0102720_23	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0102720_23	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-0102720_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0102720_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102720_26	UniRef90	UniRef90_UPI000B379167	HNH endonuclease	NA
UHGV-0102720_26	eggNOG-mapper	700598.Niako_6184	HNH nucleases	NA
UHGV-0102720_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0102720_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0102720_27	PHROG	phrog_16706	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0102720_27	UniRef90	UniRef90_UPI0019D0D939	NA	NA
UHGV-0102720_27	eggNOG-mapper	435590.BVU_2853	NA	NA
UHGV-0102720_27	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0102720_27	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0102720_27	Structural annotation	PF14297	NA	NA
UHGV-0102720_28	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0102720_28	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0102720_28	UniRef90	UniRef90_UPI000B38F3BC	replicative DNA helicase	NA
UHGV-0102720_28	eggNOG-mapper	1408473.JHXO01000006_gene1076	Participates in initiation and elongation during chromosome replication	NA
UHGV-0102720_28	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0102720_28	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0102720_28	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0102720_28	COG	COG0305	Replicative DNA helicase	NA
UHGV-0102720_28	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0102720_29	PHROG	phrog_24654	NA	unknown function
UHGV-0102720_32	eggNOG-mapper	357276.EL88_11460	NA	NA
UHGV-0102720_34	PHROG	phrog_8684	NA	unknown function
UHGV-0102720_34	UniRef90	UniRef90_UPI000B3983BA	YopX family protein	NA
UHGV-0102720_34	eggNOG-mapper	411473.RUMCAL_00280	YopX protein	NA
UHGV-0102720_34	Pfam	PF09643	YopX protein	YopX
UHGV-0102720_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0102720_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0102720_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0102720_35	UniRef90	UniRef90_UPI000E4929ED	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0102720_35	eggNOG-mapper	357276.EL88_11445	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0102720_35	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0102720_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0102720_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0102720_35	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-0102720_36	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0102720_36	UniRef90	UniRef90_UPI000E533484	radical SAM protein	NA
UHGV-0102720_36	eggNOG-mapper	457424.BFAG_02406	radical SAM domain protein	NA
UHGV-0102720_36	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0102720_36	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-0102720_42	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0102720_42	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0102720_43	PHROG	phrog_38431	NA	unknown function
UHGV-0102720_43	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0102720_43	eggNOG-mapper	411901.BACCAC_01108	NA	NA
UHGV-0102720_47	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0102720_48	UniRef90	UniRef90_A0A2D0A621	PEGA domain-containing protein	NA
UHGV-0102720_48	eggNOG-mapper	1121097.JCM15093_3531	NA	NA
UHGV-0102720_49	Structural annotation	PF19666	NA	NA
UHGV-0102720_52	eggNOG-mapper	1347393.HG726021_gene391	NA	NA
UHGV-0102720_53	UniRef90	UniRef90_UPI0011226A1F	phage holin family protein	NA
UHGV-0102720_53	eggNOG-mapper	1347393.HG726026_gene2534	NA	NA
UHGV-0102720_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0102720_53	Structural annotation	PF05105, COG4824	NA	NA
UHGV-0102720_54	PHROG	phrog_3108	NA	unknown function
UHGV-0102720_54	eggNOG-mapper	342610.Patl_3555	lytic transglycosylase activity	NA
UHGV-0102720_54	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0102720_58	PHROG	phrog_19846	NA	unknown function
UHGV-0102720_58	UniRef90	UniRef90_UPI000D873A09	polymer-forming cytoskeletal protein	NA
UHGV-0102720_58	eggNOG-mapper	762903.Pedsa_0939	Phage minor structural protein	NA
UHGV-0102720_58	COG	COG4926	Phage-related protein	NA
UHGV-0102720_58	Structural annotation	PF14594, PF01105, TIGR01665, COG4926	NA	NA
UHGV-0102720_59	eggNOG-mapper	1347393.HG726031_gene3982	Pectate lyase	NA
UHGV-0102720_59	COG	COG3866	Pectate lyase	NA
UHGV-0102720_59	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0102720_60	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0102720_60	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0102720_60	UniRef90	UniRef90_UPI000E4914F2	tape measure protein	NA
UHGV-0102720_60	eggNOG-mapper	411901.BACCAC_01134	NA	NA
UHGV-0102720_60	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0102720_60	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0102720_60	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0102720_60	Structural annotation	PF20155, PF16535, TIGR01760, COG3941	NA	NA
UHGV-0102720_61	Structural annotation	PF20336, TIGR01674	NA	NA
UHGV-0102720_62	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0102720_63	PHROG	phrog_5597	NA	unknown function
UHGV-0102720_63	Structural annotation	PF05657	NA	NA
UHGV-0102720_64	PHROG	phrog_5377	NA	unknown function
UHGV-0102720_64	UniRef90	UniRef90_A0A838ZA84	HK97 gp10 family phage protein	NA
UHGV-0102720_64	eggNOG-mapper	886379.AEWI01000001_gene1734	NA	NA
UHGV-0102720_66	PHROG	phrog_7935	NA	unknown function
UHGV-0102720_66	eggNOG-mapper	457424.BFAG_02426	NA	NA
UHGV-0102720_66	Pfam	PF20449	NA	DUF6706
UHGV-0102720_66	Structural annotation	PF20449	NA	NA
UHGV-0102720_67	PHROG	phrog_16445	NA	unknown function
UHGV-0102720_68	PHROG	phrog_29	major head protein	head and packaging
UHGV-0102720_68	UniRef90	UniRef90_A0A8D9UHX5	Major capsid protein E	NA
UHGV-0102720_68	eggNOG-mapper	1268240.ATFI01000008_gene2587	Phage major capsid protein E	NA
UHGV-0102720_68	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0102720_69	PHROG	phrog_38330	NA	unknown function
UHGV-0102720_69	eggNOG-mapper	1268240.ATFI01000008_gene2586	NA	NA
UHGV-0102720_69	Structural annotation	PF02924	NA	NA
UHGV-0102720_70	PHROG	phrog_5824	NA	unknown function
UHGV-0102720_70	eggNOG-mapper	762968.HMPREF9441_00579	NA	NA
UHGV-0102720_71	PHROG	phrog_35295	NA	unknown function
UHGV-0102720_71	UniRef90	UniRef90_A0A139LH69	Gln_amidase domain-containing protein	NA
UHGV-0102720_71	eggNOG-mapper	457424.BFAG_02418	cell adhesion	NA
UHGV-0102720_71	COG	COG2369	NA	NA
UHGV-0102720_72	PHROG	phrog_64	portal protein	head and packaging
UHGV-0102720_72	UniRef90	UniRef90_A0A412WEY4	Phage portal protein	NA
UHGV-0102720_72	eggNOG-mapper	445970.ALIPUT_01192	phage portal protein, SPP1	NA
UHGV-0102720_72	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0102720_72	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0102720_73	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0102720_73	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0102720_73	UniRef90	UniRef90_A0A412WF06	PBSX family phage terminase large subunit	NA
UHGV-0102720_73	eggNOG-mapper	1227266.HMPREF1551_00524	Phage terminase, large subunit, PBSX family	NA
UHGV-0102720_73	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0102720_73	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0102720_73	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0102720_73	COG	COG1783	Phage terminase large subunit	NA
UHGV-0102720_73	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0102720_74	PHROG	phrog_15125	NA	unknown function
UHGV-0102720_74	UniRef90	UniRef90_F3QSL2	Conserved domain protein	NA
UHGV-0102720_74	eggNOG-mapper	1268240.ATFI01000008_gene2580	NA	NA
UHGV-0102720_76	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0102720_76	UniRef90	UniRef90_A0A412WEY3	NA	NA
UHGV-0102720_76	eggNOG-mapper	1268240.ATFI01000008_gene2576	ParB-like nuclease domain	NA
UHGV-0102720_76	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0102720_76	Pfam	PF14386	NA	DUF4417
UHGV-0102720_76	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0102720_76	Structural annotation	PF14386, PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0102720_78	UniRef90	UniRef90_UPI000DDBF43E	ribbon-helix-helix domain-containing protein	NA
UHGV-0102720_79	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0102720_79	UniRef90	UniRef90_A0A412WEX8	XRE family transcriptional regulator	NA
UHGV-0102720_79	eggNOG-mapper	997884.HMPREF1068_03266	NA	NA
UHGV-0102720_79	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102720_79	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0102720_79	Structural annotation	PF01381, NF041951, COG1396	NA	NA