UHGV-0102743

Genome information

Genome length 25,908 bps

CDS count 47

Completeness 72.96% (medium-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102743
vOTU ID	vOTU-042388
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_228429
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.59
Jumbo phage	No

Genome content
Genome length	25,908 bps
GC content	56.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.45%
Average CDS length	506.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102743_1	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0102743_1	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0102743_1	Structural annotation	PF18463	NA	NA
UHGV-0102743_2	PHROG	phrog_18444	NA	unknown function
UHGV-0102743_2	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0102743_2	eggNOG-mapper	1294142.CINTURNW_1707	NA	NA
UHGV-0102743_4	Structural annotation	PF12245	NA	NA
UHGV-0102743_5	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0102743_6	PHROG	phrog_13589	NA	unknown function
UHGV-0102743_6	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0102743_8	PHROG	phrog_19111	NA	unknown function
UHGV-0102743_8	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-0102743_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0102743_9	PHROG	phrog_24267	NA	unknown function
UHGV-0102743_9	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0102743_9	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-0102743_9	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0102743_9	Structural annotation	COG4675	NA	NA
UHGV-0102743_10	KOfam	K07273	acm; lysozyme	NA
UHGV-0102743_10	PHROG	phrog_291	endolysin	lysis
UHGV-0102743_10	UniRef90	UniRef90_A0A367G061	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0102743_10	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0102743_10	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0102743_10	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0102743_10	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0102743_10	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0102743_11	PHROG	phrog_4105	NA	unknown function
UHGV-0102743_11	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0102743_12	PHROG	phrog_1129	holin	lysis
UHGV-0102743_12	UniRef90	UniRef90_A0A367FT42	Enolase	NA
UHGV-0102743_12	eggNOG-mapper	693746.OBV_13280	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0102743_12	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0102743_12	Structural annotation	PF06946	NA	NA
UHGV-0102743_13	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102743_13	UniRef90	UniRef90_A0A0U5PL36	AP2 domain protein	NA
UHGV-0102743_13	eggNOG-mapper	1304866.K413DRAFT_4685	NA	NA
UHGV-0102743_14	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0102743_14	eggNOG-mapper	1118055.CAGU01000028_gene99	NA	NA
UHGV-0102743_14	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0102743_14	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0102743_16	PHROG	phrog_1129	holin	lysis
UHGV-0102743_16	UniRef90	UniRef90_A0A367FT42	Enolase	NA
UHGV-0102743_16	eggNOG-mapper	693746.OBV_13280	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0102743_16	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0102743_17	KOfam	K14059	int; integrase	NA
UHGV-0102743_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0102743_17	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0102743_17	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0102743_17	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0102743_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102743_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102743_17	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0102743_18	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0102743_18	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102743_18	UniRef90	UniRef90_A0A7M2RF22	HNH endonuclease	NA
UHGV-0102743_18	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0102743_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0102743_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0102743_18	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0102743_19	PHROG	phrog_87	metallo-protease	other
UHGV-0102743_19	UniRef90	UniRef90_A0A329UQ57	Peptidase_M78 domain-containing protein	NA
UHGV-0102743_19	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-0102743_19	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0102743_19	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0102743_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0102743_20	UniRef90	UniRef90_A0A372V3Y4	XRE family transcriptional regulator	NA
UHGV-0102743_20	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0102743_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102743_20	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0102743_20	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0102743_21	UniRef90	UniRef90_A0A372V3V8	XRE family transcriptional regulator	NA
UHGV-0102743_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102743_21	Structural annotation	PF10078, NF040507, COG3655	NA	NA
UHGV-0102743_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0102743_34	UniRef90	UniRef90_UPI001C02C5E0	NA	NA
UHGV-0102743_34	eggNOG-mapper	718252.FP2_16510	NA	NA
UHGV-0102743_34	Structural annotation	PF20199	NA	NA
UHGV-0102743_35	PHROG	phrog_36399	NA	unknown function
UHGV-0102743_36	PHROG	phrog_8470	NA	unknown function
UHGV-0102743_36	UniRef90	UniRef90_UPI0019580896	PcfJ domain-containing protein	NA
UHGV-0102743_36	eggNOG-mapper	1226322.HMPREF1545_00100	PcfJ-like protein	NA
UHGV-0102743_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0102743_36	Structural annotation	PF14284	NA	NA
UHGV-0102743_38	PHROG	phrog_15609	NA	unknown function
UHGV-0102743_38	UniRef90	UniRef90_A0A3A6JZQ1	NA	NA
UHGV-0102743_38	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0102743_38	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0102743_40	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0102743_40	Structural annotation	TIGR01636	NA	NA
UHGV-0102743_42	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102743_42	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0102743_42	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0102743_43	PHROG	phrog_1066	NA	unknown function
UHGV-0102743_43	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0102743_43	AcrCatalog	cluster_154855	NA	NA
UHGV-0102743_44	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0102743_44	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-0102743_44	eggNOG-mapper	1410630.JNKP01000001_gene1822	phage terminase, large subunit	NA
UHGV-0102743_44	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0102743_44	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0102743_45	PHROG	phrog_104	portal protein	head and packaging
UHGV-0102743_45	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0102743_45	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0102743_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0102743_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0102743_46	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0102743_46	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0102743_46	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0102743_46	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0102743_47	PHROG	phrog_34144	NA	unknown function
UHGV-0102743_47	eggNOG-mapper	742742.HMPREF9452_00763	NA	NA
UHGV-0102743_47	Structural annotation	PF20111	NA	NA