UHGV-0102767

Genome information

Genome length 37,599 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102767
vOTU ID	vOTU-013005
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_201334
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.14
Jumbo phage	No

Genome content
Genome length	37,599 bps
GC content	44.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	92.84%
Average CDS length	569.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102767_1	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0102767_2	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0102767_2	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0102767_2	UniRef90	UniRef90_D4JVI1	Tape measure domain	NA
UHGV-0102767_2	eggNOG-mapper	755731.Clo1100_1173	tape measure	NA
UHGV-0102767_2	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0102767_2	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0102767_2	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0102767_2	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0102767_3	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0102767_4	Structural annotation	NF041921	NA	NA
UHGV-0102767_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0102767_6	UniRef90	UniRef90_D4JVI5	Phage terminase-like protein, large subunit	NA
UHGV-0102767_6	eggNOG-mapper	903814.ELI_1296	Phage Terminase	NA
UHGV-0102767_6	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0102767_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0102767_6	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0102767_6	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0102767_7	Structural annotation	PF11836	NA	NA
UHGV-0102767_8	UniRef90	UniRef90_D4JVI7	CdiA_C domain-containing protein	NA
UHGV-0102767_8	eggNOG-mapper	1042156.CXIVA_01840	Phage Mu protein F like protein	NA
UHGV-0102767_8	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0102767_8	COG	COG2369	NA	NA
UHGV-0102767_9	PHROG	phrog_88	major tail protein	tail
UHGV-0102767_9	UniRef90	UniRef90_D4JVI8	Phage major tail protein, phi13 family	NA
UHGV-0102767_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0102767_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0102767_10	Structural annotation	PF05657	NA	NA
UHGV-0102767_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0102767_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0102767_12	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0102767_12	UniRef90	UniRef90_A0A352DNU5	Phage gp6-like head-tail connector protein	NA
UHGV-0102767_12	eggNOG-mapper	632245.CLP_2693	Phage gp6-like head-tail connector protein	NA
UHGV-0102767_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0102767_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0102767_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0102767_13	PHROG	phrog_6865	NA	unknown function
UHGV-0102767_13	Structural annotation	PF01281	NA	NA
UHGV-0102767_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0102767_14	UniRef90	UniRef90_D4JVJ2	Phage major capsid protein, HK97 family	NA
UHGV-0102767_14	eggNOG-mapper	1304866.K413DRAFT_1225	phage major capsid protein, HK97 family	NA
UHGV-0102767_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0102767_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0102767_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0102767_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0102767_15	KOfam	K06904	NA	NA
UHGV-0102767_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0102767_15	UniRef90	UniRef90_D4JVJ3	Phage head maturation protease	NA
UHGV-0102767_15	eggNOG-mapper	1196031.ALEG01000039_gene1815	Phage prohead protease, HK97 family	NA
UHGV-0102767_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0102767_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0102767_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0102767_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0102767_17	UniRef90	UniRef90_D4JVJ5	Phage portal protein, HK97 family	NA
UHGV-0102767_17	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0102767_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0102767_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0102767_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0102767_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0102767_18	UniRef90	UniRef90_UPI001898F58A	P27 family phage terminase small subunit	NA
UHGV-0102767_18	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-0102767_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0102767_19	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0102767_19	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102767_19	UniRef90	UniRef90_B0MKX5	HNHc domain-containing protein	NA
UHGV-0102767_19	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0102767_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0102767_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0102767_20	UniRef90	UniRef90_A0A892AKX3	NA	NA
UHGV-0102767_20	eggNOG-mapper	1127695.HMPREF9163_00326	sigma factor activity	NA
UHGV-0102767_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0102767_20	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0102767_22	PHROG	phrog_924	NA	unknown function
UHGV-0102767_22	Pfam	PF04448	NA	DUF551
UHGV-0102767_22	Structural annotation	PF04448	NA	NA
UHGV-0102767_25	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0102767_25	UniRef90	UniRef90_A0A7X8EV86	NA	NA
UHGV-0102767_25	eggNOG-mapper	1244856.K4PY83_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0102767_25	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0102767_27	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0102767_27	UniRef90	UniRef90_A0A150BAU8	VRR-NUC domain-containing protein	NA
UHGV-0102767_27	eggNOG-mapper	1347392.CCEZ01000005_gene1219	VRR_NUC	NA
UHGV-0102767_27	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0102767_27	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0102767_28	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0102767_28	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0102767_28	UniRef90	UniRef90_A0A6N8HZM3	Putative DNA repair helicase RadD	NA
UHGV-0102767_28	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0102767_28	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0102767_28	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0102767_28	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0102767_28	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0102767_28	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0102767_29	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0102767_29	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0102767_29	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0102767_29	Pfam	PF06048	NA	DUF927
UHGV-0102767_29	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0102767_29	COG	COG5519	NA	NA
UHGV-0102767_29	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0102767_30	PHROG	phrog_18107	NA	unknown function
UHGV-0102767_30	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0102767_30	eggNOG-mapper	536233.CLO_1545	NA	NA
UHGV-0102767_30	Structural annotation	PF05037	NA	NA
UHGV-0102767_31	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0102767_31	UniRef90	UniRef90_A0A6P1TM46	AAA family ATPase	NA
UHGV-0102767_31	eggNOG-mapper	536233.CLO_1541	AAA domain	NA
UHGV-0102767_31	Pfam	PF13479	AAA domain	AAA_24
UHGV-0102767_31	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0102767_32	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0102767_32	UniRef90	UniRef90_C7GC36	Siphovirus Gp157	NA
UHGV-0102767_32	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0102767_32	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0102767_32	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0102767_33	PHROG	phrog_15609	NA	unknown function
UHGV-0102767_33	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0102767_33	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0102767_33	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0102767_34	PHROG	phrog_8470	NA	unknown function
UHGV-0102767_34	UniRef90	UniRef90_A0A315Y141	PcfJ-like protein	NA
UHGV-0102767_34	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0102767_34	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0102767_34	Structural annotation	PF14284	NA	NA
UHGV-0102767_35	PHROG	phrog_38338	NA	unknown function
UHGV-0102767_35	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0102767_36	PHROG	phrog_27517	NA	unknown function
UHGV-0102767_37	Structural annotation	PF04218, NF040595, COG3415	NA	NA
UHGV-0102767_38	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0102767_38	PHROG	phrog_11371	NA	unknown function
UHGV-0102767_38	UniRef90	UniRef90_A0A1C6BWK1	Modification methylase VspI	NA
UHGV-0102767_38	eggNOG-mapper	742738.HMPREF9460_01134	Type II restriction enzyme, methylase subunits	NA
UHGV-0102767_38	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0102767_38	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0102767_38	Structural annotation	PF20473, MF_02217, NF001556, COG0742	NA	NA
UHGV-0102767_39	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0102767_41	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0102767_41	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0102767_41	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0102767_47	UniRef90	UniRef90_A0A2N6UIC0	NA	NA
UHGV-0102767_47	eggNOG-mapper	445974.CLORAM_02965	NA	NA
UHGV-0102767_47	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0102767_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0102767_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0102767_48	UniRef90	UniRef90_A0A3B8P2Z5	Transcriptional regulator	NA
UHGV-0102767_48	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0102767_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102767_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0102767_50	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0102767_50	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0102767_50	UniRef90	UniRef90_D4JVL7	Exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0102767_50	eggNOG-mapper	877424.ATWC01000001_gene2107	EXOIII	NA
UHGV-0102767_50	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0102767_50	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0102767_50	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0102767_50	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0102767_50	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0102767_50	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847, COG5275	NA	NA
UHGV-0102767_51	eggNOG-mapper	755731.Clo1100_1139	NA	NA
UHGV-0102767_52	KOfam	K14059	int; integrase	NA
UHGV-0102767_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0102767_52	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-0102767_52	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0102767_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102767_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102767_52	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0102767_55	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0102767_55	UniRef90	UniRef90_A0A174Z3H5	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0102767_55	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0102767_55	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0102767_55	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0102767_56	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0102767_56	UniRef90	UniRef90_D4JUD3	Phage minor capsid protein 2	NA
UHGV-0102767_56	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0102767_59	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0102767_59	UniRef90	UniRef90_D4JUD4	Phage putative head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0102767_59	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-0102767_59	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0102767_59	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0102767_59	COG	COG2369	NA	NA
UHGV-0102767_61	Structural annotation	PF12305	NA	NA