UHGV-0102789

Genome information

Genome length 32,189 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9663

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102789
vOTU ID	vOTU-065984
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_215963
BioSample	SAMEA3541476
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9663
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.08
Jumbo phage	No

Genome content
Genome length	32,189 bps
GC content	53.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.22%
Average CDS length	543.49 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102789_1	KOfam	K14059	int; integrase	NA
UHGV-0102789_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0102789_1	UniRef90	UniRef90_D1PN97	Site-specific recombinase, phage integrase family	NA
UHGV-0102789_1	eggNOG-mapper	411471.SUBVAR_05816	Belongs to the 'phage' integrase family	NA
UHGV-0102789_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0102789_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102789_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102789_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0102789_2	PHROG	phrog_17982	NA	unknown function
UHGV-0102789_2	UniRef90	UniRef90_D1PN98	HIRAN domain-containing protein	NA
UHGV-0102789_2	eggNOG-mapper	411471.SUBVAR_05817	NA	NA
UHGV-0102789_2	Pfam	PF14020	NA	DUF4236
UHGV-0102789_2	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0102789_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0102789_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0102789_4	UniRef90	UniRef90_UPI00195B9E4B	helix-turn-helix domain-containing protein	NA
UHGV-0102789_4	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0102789_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102789_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0102789_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0102789_11	PHROG	phrog_10280	NA	unknown function
UHGV-0102789_12	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0102789_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0102789_13	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0102789_13	Pfam	PF05772	NinB protein	NinB
UHGV-0102789_13	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0102789_14	PHROG	phrog_7566	NA	unknown function
UHGV-0102789_14	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0102789_16	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0102789_16	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0102789_16	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0102789_17	PHROG	phrog_1029	NA	unknown function
UHGV-0102789_17	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0102789_17	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0102789_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0102789_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102789_18	UniRef90	UniRef90_UPI001959E524	single-stranded DNA-binding protein	NA
UHGV-0102789_18	eggNOG-mapper	411471.SUBVAR_05834	Single-stranded DNA-binding protein	NA
UHGV-0102789_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0102789_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0102789_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0102789_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0102789_18	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0102789_19	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0102789_19	UniRef90	UniRef90_UPI00195E2095	helix-turn-helix domain-containing protein	NA
UHGV-0102789_19	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0102789_19	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0102789_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0102789_19	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0102789_21	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0102789_21	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0102789_21	UniRef90	UniRef90_D1PNB9	DNA helicase	NA
UHGV-0102789_21	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0102789_21	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0102789_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0102789_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-0102789_21	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0102789_22	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0102789_22	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0102789_22	UniRef90	UniRef90_D1PNC0	CobQ/CobB/MinD/ParA nucleotide binding domain protein	NA
UHGV-0102789_22	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0102789_22	Pfam	PF13614	AAA domain	AAA_31
UHGV-0102789_22	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0102789_22	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0102789_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0102789_26	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0102789_26	UniRef90	UniRef90_UPI00195AE2D5	ParB N-terminal domain-containing protein	NA
UHGV-0102789_26	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0102789_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0102789_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0102789_26	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0102789_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0102789_27	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0102789_27	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0102789_27	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0102789_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102789_29	UniRef90	UniRef90_UPI0005937579	HNH endonuclease	NA
UHGV-0102789_29	eggNOG-mapper	543734.LCABL_11060	HNH endonuclease	NA
UHGV-0102789_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0102789_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0102789_30	PHROG	phrog_13845	NA	unknown function
UHGV-0102789_30	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0102789_30	Structural annotation	PF05119, COG3747	NA	NA
UHGV-0102789_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0102789_31	UniRef90	UniRef90_D1PNC7	Putative phage terminase, large subunit	NA
UHGV-0102789_31	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-0102789_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0102789_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0102789_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0102789_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0102789_32	eggNOG-mapper	552398.HMPREF0866_03119	NA	NA
UHGV-0102789_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0102789_34	UniRef90	UniRef90_D1PNC9	Putative phage portal protein, HK97 family	NA
UHGV-0102789_34	eggNOG-mapper	411471.SUBVAR_05850	Phage portal protein	NA
UHGV-0102789_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0102789_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0102789_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0102789_35	KOfam	K06904	NA	NA
UHGV-0102789_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0102789_35	UniRef90	UniRef90_D1PND0	Phage prohead protease, HK97 family	NA
UHGV-0102789_35	eggNOG-mapper	411471.SUBVAR_05851	Caudovirus prohead serine protease	NA
UHGV-0102789_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0102789_35	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0102789_35	COG	COG3740	Phage head maturation protease	NA
UHGV-0102789_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0102789_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0102789_36	UniRef90	UniRef90_UPI001D0099A7	phage major capsid protein	NA
UHGV-0102789_36	eggNOG-mapper	411471.SUBVAR_05852	Phage capsid family	NA
UHGV-0102789_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0102789_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0102789_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0102789_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0102789_37	PHROG	phrog_35892	NA	unknown function
UHGV-0102789_37	UniRef90	UniRef90_UPI0018893C0D	excalibur calcium-binding domain-containing protein	NA
UHGV-0102789_37	eggNOG-mapper	864565.HMPREF0379_1838	Protein involved in outer membrane biogenesis	NA
UHGV-0102789_37	Pfam	PF16709	Ig domain of plant-specific actin-binding protein	SCAB-Ig
UHGV-0102789_37	NCBIFam	NF040485.1	ZirU family protein	NA
UHGV-0102789_37	COG	COG2982	NA	NA
UHGV-0102789_38	PHROG	phrog_5223	neck protein	connector
UHGV-0102789_38	UniRef90	UniRef90_UPI00073F29ED	head-tail connector protein	NA
UHGV-0102789_38	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-0102789_38	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0102789_38	Structural annotation	TIGR01560	NA	NA
UHGV-0102789_39	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0102789_39	UniRef90	UniRef90_D1PND3	Putative phage head-tail adaptor	NA
UHGV-0102789_39	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0102789_39	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0102789_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0102789_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0102789_40	UniRef90	UniRef90_A0A8J6PH82	HK97 gp10 family phage protein	NA
UHGV-0102789_40	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0102789_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0102789_40	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0102789_41	PHROG	phrog_78	tail terminator	connector
UHGV-0102789_41	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-0102789_41	Structural annotation	PF20765	NA	NA
UHGV-0102789_42	PHROG	phrog_88	major tail protein	tail
UHGV-0102789_42	UniRef90	UniRef90_D1PND6	Phage major tail protein, phi13 family	NA
UHGV-0102789_42	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-0102789_42	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0102789_42	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0102789_43	PHROG	phrog_709	NA	unknown function
UHGV-0102789_43	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0102789_43	Structural annotation	PF11836	NA	NA
UHGV-0102789_44	PHROG	phrog_3033	NA	unknown function
UHGV-0102789_44	eggNOG-mapper	1280671.AUJH01000012_gene3142	NA	NA
UHGV-0102789_45	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0102789_45	UniRef90	UniRef90_D1PND9	Phage tail tape measure protein, TP901 family	NA
UHGV-0102789_45	eggNOG-mapper	411471.SUBVAR_05860	tail tape measure protein, TP901	NA
UHGV-0102789_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0102789_45	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0102789_45	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0102789_46	PHROG	phrog_20385	minor tail protein	tail
UHGV-0102789_46	UniRef90	UniRef90_UPI001C013719	phage baseplate protein	NA
UHGV-0102789_46	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0102789_46	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0102789_47	PHROG	phrog_7064	tail protein	tail
UHGV-0102789_47	eggNOG-mapper	411471.SUBVAR_05862	NA	NA
UHGV-0102789_47	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0102789_48	PHROG	phrog_5811	NA	unknown function
UHGV-0102789_48	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-0102789_48	Structural annotation	PF20747, TIGR03353	NA	NA
UHGV-0102789_51	UniRef90	UniRef90_R6I1X1	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	NA
UHGV-0102789_51	eggNOG-mapper	552398.HMPREF0866_01159	NA	NA
UHGV-0102789_52	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0102789_52	UniRef90	UniRef90_D1PNE6	Peptidase, M23 family	NA
UHGV-0102789_52	eggNOG-mapper	665956.HMPREF1032_02928	NA	NA
UHGV-0102789_52	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0102789_52	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0102789_53	PHROG	phrog_4105	NA	unknown function
UHGV-0102789_53	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0102789_54	PHROG	phrog_1129	holin	lysis
UHGV-0102789_54	UniRef90	UniRef90_UPI001F43F0BF	phage holin family protein	NA
UHGV-0102789_54	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0102789_54	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0102789_54	Structural annotation	PF06946	NA	NA