UHGV-0102894

Genome information

Genome length 36,134 bps

CDS count 58

Completeness 75.55% (medium-quality)

geNomad score 0.9638

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102894
vOTU ID	vOTU-023926
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_226734
BioSample	SAMEA3708633
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9638
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.79
Jumbo phage	No

Genome content
Genome length	36,134 bps
GC content	31.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.04%
Average CDS length	571.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102894_1	KOfam	K14059	int; integrase	NA
UHGV-0102894_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0102894_1	UniRef90	UniRef90_A0A2T3G259	Site-specific integrase	NA
UHGV-0102894_1	eggNOG-mapper	1123313.ATUT01000024_gene585	Pfam:Integrase_AP2	NA
UHGV-0102894_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0102894_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0102894_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0102894_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0102894_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0102894_5	UniRef90	UniRef90_UPI001C2CB056	tetratricopeptide repeat protein	NA
UHGV-0102894_5	eggNOG-mapper	1175629.AJTG01000007_gene1035	NA	NA
UHGV-0102894_6	PHROG	phrog_87	metallo-protease	other
UHGV-0102894_6	UniRef90	UniRef90_UPI0018AA4A01	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0102894_6	eggNOG-mapper	1211844.CBLM010000023_gene993	IrrE N-terminal-like domain	NA
UHGV-0102894_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0102894_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0102894_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0102894_7	UniRef90	UniRef90_UPI0018AA4539	helix-turn-helix domain-containing protein	NA
UHGV-0102894_7	eggNOG-mapper	350688.Clos_1286	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0102894_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102894_7	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0102894_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0102894_8	UniRef90	UniRef90_A0A417I7U0	XRE family transcriptional regulator	NA
UHGV-0102894_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102894_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0102894_8	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0102894_10	UniRef90	UniRef90_A0A2T3G269	DNA-binding protein	NA
UHGV-0102894_12	Structural annotation	PF07408, MF_01560, NF010187, COG4838	NA	NA
UHGV-0102894_15	Structural annotation	PF04325, TIGR04116, COG5570	NA	NA
UHGV-0102894_16	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102894_16	UniRef90	UniRef90_A0A7I8DYN2	YqaJ domain-containing protein	NA
UHGV-0102894_16	eggNOG-mapper	1211844.CBLM010000016_gene1516	YqaJ-like viral recombinase domain	NA
UHGV-0102894_16	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0102894_16	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0102894_16	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0102894_16	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0102894_17	PHROG	phrog_674	NA	unknown function
UHGV-0102894_17	UniRef90	UniRef90_A0A416FZA6	NA	NA
UHGV-0102894_17	eggNOG-mapper	1449343.JQLQ01000002_gene1360	NA	NA
UHGV-0102894_17	Pfam	PF07083	NA	DUF1351
UHGV-0102894_17	Structural annotation	PF07083	NA	NA
UHGV-0102894_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0102894_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0102894_18	UniRef90	UniRef90_A0A7I8E0N6	Putative recombinase-phage associated	NA
UHGV-0102894_18	eggNOG-mapper	1211844.CBLM010000016_gene1512	RecT family	NA
UHGV-0102894_18	Pfam	PF03837	RecT family	RecT
UHGV-0102894_18	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0102894_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0102894_18	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0102894_19	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0102894_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0102894_19	Structural annotation	PF09681, MF_01177, NF033789, COG0640	NA	NA
UHGV-0102894_20	UniRef90	UniRef90_A0A1C6FLE7	Inhibitor_G39P domain-containing protein	NA
UHGV-0102894_20	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0102894_20	Structural annotation	PF11417	NA	NA
UHGV-0102894_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0102894_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102894_21	UniRef90	UniRef90_A0A2T3G281	Single-stranded DNA-binding protein	NA
UHGV-0102894_21	eggNOG-mapper	1504823.CCMM01000012_gene1971	Single-strand binding protein family	NA
UHGV-0102894_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0102894_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0102894_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0102894_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0102894_21	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0102894_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0102894_23	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0102894_23	UniRef90	UniRef90_A0A2T3G2C3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0102894_23	eggNOG-mapper	1211844.CBLM010000016_gene1505	Endodeoxyribonuclease RusA	NA
UHGV-0102894_23	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0102894_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0102894_23	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0102894_25	KOfam	K21029	moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]	NA
UHGV-0102894_25	UniRef90	UniRef90_A0A417IIR9	ThiF domain-containing protein	NA
UHGV-0102894_25	eggNOG-mapper	428127.EUBDOL_01242	ThiF family	NA
UHGV-0102894_25	PADLOC	E1E2_00006	E1-E2	CBASS
UHGV-0102894_25	Pfam	PF00899	ThiF family	ThiF
UHGV-0102894_25	COG	COG0476	Molybdopterin or thiamine biosynthesis adenylyltransferase	NA
UHGV-0102894_25	Structural annotation	PF00899, MF_03049, TIGR03736, COG0476	NA	NA
UHGV-0102894_27	UniRef90	UniRef90_A0A1T4LZF6	E2 family protein D	NA
UHGV-0102894_27	Structural annotation	PF14460, TIGR03737	NA	NA
UHGV-0102894_28	Structural annotation	PF01283, NF006816, COG4830	NA	NA
UHGV-0102894_29	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0102894_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0102894_30	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102894_30	UniRef90	UniRef90_A0A7I8E011	ASCH domain-containing protein	NA
UHGV-0102894_30	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-0102894_30	Pfam	PF12961	NA	DUF3850
UHGV-0102894_30	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0102894_33	Structural annotation	PF13973, NF008465, COG5475	NA	NA
UHGV-0102894_34	PHROG	phrog_12650	NA	unknown function
UHGV-0102894_34	Structural annotation	NF010673	NA	NA
UHGV-0102894_36	UniRef90	UniRef90_A0A2T3G2L3	Ferritin-like diiron domain-containing protein	NA
UHGV-0102894_36	eggNOG-mapper	1211844.CBLM010000023_gene991	NA	NA
UHGV-0102894_37	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0102894_37	PHROG	phrog_14430	NA	unknown function
UHGV-0102894_37	UniRef90	UniRef90_UPI001D0A1198	ATP-binding protein	NA
UHGV-0102894_37	eggNOG-mapper	888055.HMPREF9015_00314	NA	NA
UHGV-0102894_37	PADLOC	AAA_15	NA	NA
UHGV-0102894_37	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0102894_37	COG	COG3950	Predicted ATP-binding protein involved in virulence	NA
UHGV-0102894_37	Structural annotation	PF11398, MF_00365, NF041760, COG4938	NA	NA
UHGV-0102894_38	eggNOG-mapper	622312.ROSEINA2194_00320	NA	NA
UHGV-0102894_39	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0102894_39	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0102894_39	UniRef90	UniRef90_UPI0018A9B124	terminase small subunit	NA
UHGV-0102894_39	eggNOG-mapper	1511.CLOST_1532	terminase, small subunit	NA
UHGV-0102894_39	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0102894_39	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0102894_39	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0102894_39	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0102894_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0102894_40	PHROG	phrog_10250	NA	unknown function
UHGV-0102894_40	UniRef90	UniRef90_A0A416FZH9	PBSX family phage terminase large subunit	NA
UHGV-0102894_40	eggNOG-mapper	1121105.ATXL01000006_gene1371	Terminase-like family	NA
UHGV-0102894_40	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0102894_40	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0102894_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0102894_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0102894_40	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0102894_41	PHROG	phrog_64	portal protein	head and packaging
UHGV-0102894_41	UniRef90	UniRef90_A0A416FZX0	Phage portal protein	NA
UHGV-0102894_41	eggNOG-mapper	476272.RUMHYD_02846	Phage portal protein, SPP1 family	NA
UHGV-0102894_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0102894_41	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0102894_41	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0102894_42	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0102894_42	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0102894_42	UniRef90	UniRef90_A0A1C6FP41	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0102894_42	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0102894_42	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0102894_42	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0102894_42	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0102894_42	COG	COG2369	NA	NA
UHGV-0102894_42	Structural annotation	PF04233, PF18825, TIGR01641, COG2369	NA	NA
UHGV-0102894_44	PHROG	phrog_1233	NA	unknown function
UHGV-0102894_44	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0102894_44	Structural annotation	PF13058	NA	NA
UHGV-0102894_45	PHROG	phrog_30609	NA	unknown function
UHGV-0102894_45	Structural annotation	PF21485	NA	NA
UHGV-0102894_46	KOfam	K07584	NA	NA
UHGV-0102894_46	PHROG	phrog_4478	peptidase	other
UHGV-0102894_46	UniRef90	UniRef90_A0A1C6FNU8	Predicted ribosomal protein	NA
UHGV-0102894_46	eggNOG-mapper	555088.DealDRAFT_1009	Pfam:Peptidase_C108	NA
UHGV-0102894_46	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0102894_46	COG	COG2868	NA	NA
UHGV-0102894_46	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0102894_47	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0102894_47	UniRef90	UniRef90_UPI001D064961	NA	NA
UHGV-0102894_47	eggNOG-mapper	476272.RUMHYD_02853	NA	NA
UHGV-0102894_47	Pfam	PF14265	NA	DUF4355
UHGV-0102894_47	Structural annotation	PF14265	NA	NA
UHGV-0102894_48	PHROG	phrog_544	major head protein	head and packaging
UHGV-0102894_48	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-0102894_48	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0102894_49	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0102894_49	UniRef90	UniRef90_UPI0018F16521	Rho termination protein	NA
UHGV-0102894_49	eggNOG-mapper	491915.Aflv_0665	NA	NA
UHGV-0102894_50	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0102894_50	UniRef90	UniRef90_UPI001961CD9D	phage head-tail connector protein	NA
UHGV-0102894_50	eggNOG-mapper	1235796.C815_00917	Phage gp6-like head-tail connector protein	NA
UHGV-0102894_50	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0102894_50	Structural annotation	PF05135	NA	NA
UHGV-0102894_51	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0102894_51	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0102894_51	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0102894_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0102894_52	UniRef90	UniRef90_UPI0001A2720F	HK97 gp10 family phage protein	NA
UHGV-0102894_52	eggNOG-mapper	1232453.BAIF02000011_gene3362	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0102894_52	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0102894_52	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0102894_52	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0102894_53	PHROG	phrog_176	tail terminator	connector
UHGV-0102894_53	UniRef90	UniRef90_A0A416FZL1	NA	NA
UHGV-0102894_53	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0102894_53	Structural annotation	PF11367	NA	NA
UHGV-0102894_54	PHROG	phrog_238	major tail protein	tail
UHGV-0102894_54	UniRef90	UniRef90_A0A2T3G2T7	Phage major tail protein, TP901-1 family	NA
UHGV-0102894_54	eggNOG-mapper	476272.RUMHYD_02860	Phage tail tube protein	NA
UHGV-0102894_54	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0102894_54	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0102894_54	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0102894_55	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0102894_55	UniRef90	UniRef90_A0A315ZUX3	Phage tail assembly chaperone protein, TAC	NA
UHGV-0102894_55	eggNOG-mapper	1158610.UC3_03187	Phage tail assembly chaperone protein, TAC	NA
UHGV-0102894_55	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0102894_55	Structural annotation	PF12363	NA	NA
UHGV-0102894_56	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0102894_57	PHROG	phrog_1204	tail protein	tail
UHGV-0102894_57	UniRef90	UniRef90_A0A1C6FQH8	Phage-related protein	NA
UHGV-0102894_57	eggNOG-mapper	1235798.C817_03468	nuclear chromosome segregation	NA
UHGV-0102894_57	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0102894_57	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0102894_57	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0102894_57	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0102894_58	PHROG	phrog_5163	minor tail protein	tail
UHGV-0102894_58	UniRef90	UniRef90_UPI001D0DEA13	phage tail family protein	NA
UHGV-0102894_58	eggNOG-mapper	476272.RUMHYD_02864	NA	NA
UHGV-0102894_58	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0102894_58	COG	COG4722	Phage-related protein YomH	NA