UHGV-0102983

Genome information

Genome length 36,414 bps

CDS count 55

Completeness 76.58% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102983
vOTU ID	vOTU-039005
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_209230
BioSample	SAMEA3449173
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.17
Jumbo phage	No

Genome content
Genome length	36,414 bps
GC content	47.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.62%
Average CDS length	622.80 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102983_1	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0102983_1	eggNOG-mapper	1117108.PAALTS15_13517	minor tail protein	NA
UHGV-0102983_1	COG	COG1511	NA	NA
UHGV-0102983_1	Structural annotation	PF09486, NF011863, COG1579	NA	NA
UHGV-0102983_2	PHROG	phrog_706	NA	unknown function
UHGV-0102983_2	UniRef90	UniRef90_UPI00192502EA	Gp15 family bacteriophage protein	NA
UHGV-0102983_2	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0102983_2	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0102983_2	Structural annotation	PF06854	NA	NA
UHGV-0102983_3	PHROG	phrog_11299	NA	unknown function
UHGV-0102983_3	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0102983_3	Structural annotation	PF10666	NA	NA
UHGV-0102983_4	PHROG	phrog_3099	NA	unknown function
UHGV-0102983_4	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-0102983_4	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0102983_5	PHROG	phrog_3266	tail completion	connector
UHGV-0102983_5	eggNOG-mapper	1304866.K413DRAFT_3042	NA	NA
UHGV-0102983_5	Structural annotation	PF20765	NA	NA
UHGV-0102983_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0102983_6	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-0102983_6	eggNOG-mapper	665956.HMPREF1032_02947	Minor capsid protein	NA
UHGV-0102983_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0102983_6	Structural annotation	PF11114	NA	NA
UHGV-0102983_7	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0102983_7	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0102983_8	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0102983_8	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0102983_8	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0102983_9	Pfam	PF13912	C2H2-type zinc finger	zf-C2H2_6
UHGV-0102983_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-0102983_10	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0102983_10	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0102983_10	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0102983_11	UniRef90	UniRef90_UPI0005F28447	phage scaffolding protein	NA
UHGV-0102983_11	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0102983_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0102983_12	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0102983_12	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0102983_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0102983_12	COG	COG2369	NA	NA
UHGV-0102983_12	Structural annotation	PF06152	NA	NA
UHGV-0102983_13	PHROG	phrog_533	portal protein	head and packaging
UHGV-0102983_13	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0102983_13	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0102983_13	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0102983_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0102983_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0102983_15	UniRef90	UniRef90_UPI000B8B31AD	PBSX family phage terminase large subunit	NA
UHGV-0102983_15	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0102983_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0102983_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0102983_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0102983_15	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0102983_17	PHROG	phrog_5057	NA	unknown function
UHGV-0102983_17	COG	COG2369	NA	NA
UHGV-0102983_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0102983_18	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0102983_18	UniRef90	UniRef90_UPI001C389DC7	NA	NA
UHGV-0102983_18	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0102983_18	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0102983_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0102983_18	Pfam	PF14386	NA	DUF4417
UHGV-0102983_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0102983_18	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0102983_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0102983_19	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-0102983_19	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0102983_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0102983_19	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0102983_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0102983_20	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0102983_20	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0102983_20	eggNOG-mapper	1567011.A0A0A7S133_9VIRU	Endodeoxyribonuclease RusA	NA
UHGV-0102983_20	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0102983_22	PHROG	phrog_8684	NA	unknown function
UHGV-0102983_22	UniRef90	UniRef90_A0A374HKH4	YopX domain-containing protein	NA
UHGV-0102983_22	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0102983_22	Pfam	PF09643	YopX protein	YopX
UHGV-0102983_22	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0102983_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0102983_23	PHROG	phrog_10714	NA	unknown function
UHGV-0102983_26	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0102983_26	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0102983_26	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-0102983_26	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0102983_26	Pfam	PF00692	dUTPase	dUTPase
UHGV-0102983_26	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0102983_26	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0102983_26	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0102983_28	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0102983_28	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0102983_28	eggNOG-mapper	1567013.A0A0A7RTL4_9CAUD	calcium ion binding	NA
UHGV-0102983_28	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0102983_28	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0102983_28	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0102983_29	PHROG	phrog_2113	NA	unknown function
UHGV-0102983_29	UniRef90	UniRef90_A0A832PDJ8	DNA replication protein	NA
UHGV-0102983_29	eggNOG-mapper	871968.DESME_09725	NA	NA
UHGV-0102983_29	Structural annotation	PF21715	NA	NA
UHGV-0102983_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0102983_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0102983_30	UniRef90	UniRef90_R6I6X7	Single-stranded DNA-binding protein	NA
UHGV-0102983_30	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-0102983_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0102983_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0102983_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0102983_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0102983_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0102983_32	PHROG	phrog_7566	NA	unknown function
UHGV-0102983_32	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0102983_33	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0102983_33	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0102983_33	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0102983_33	Structural annotation	PF05772	NA	NA
UHGV-0102983_34	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0102983_34	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0102983_34	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0102983_34	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0102983_35	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0102983_35	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-0102983_35	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0102983_35	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0102983_35	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0102983_37	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0102983_37	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0102983_37	UniRef90	UniRef90_A0A358WYE5	Beta sliding clamp	NA
UHGV-0102983_37	eggNOG-mapper	64471.sync_0001	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0102983_37	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0102983_37	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0102983_37	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0102983_37	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-0102983_37	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0102983_37	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0102983_38	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-0102983_38	PHROG	phrog_38038	NA	unknown function
UHGV-0102983_38	UniRef90	UniRef90_A0A1V5S330	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0102983_38	eggNOG-mapper	755731.Clo1100_3595	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0102983_38	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0102983_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0102983_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0102983_39	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0102983_39	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0102983_39	UniRef90	UniRef90_UPI00189D03C9	DNA cytosine methyltransferase	NA
UHGV-0102983_39	eggNOG-mapper	1235799.C818_01392	C-5 cytosine-specific DNA methylase	NA
UHGV-0102983_39	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0102983_39	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0102983_39	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0102983_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0102983_39	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0102983_40	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0102983_40	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0102983_40	UniRef90	UniRef90_A0A316L965	DNA methylase N-4	NA
UHGV-0102983_40	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-0102983_40	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0102983_40	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0102983_40	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0102983_40	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0102983_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0102983_41	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-0102983_41	eggNOG-mapper	696369.KI912183_gene1572	PFAM helix-turn-helix	NA
UHGV-0102983_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102983_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0102983_41	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0102983_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0102983_45	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0102983_45	UniRef90	UniRef90_UPI0011A9B5F0	phage antirepressor	NA
UHGV-0102983_45	eggNOG-mapper	1123299.AUKZ01000018_gene216	BRO family, N-terminal domain	NA
UHGV-0102983_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0102983_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0102983_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0102983_45	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0102983_48	UniRef90	UniRef90_A0A6B4SGD7	NA	NA
UHGV-0102983_48	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0102983_48	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-0102983_48	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0102983_49	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0102983_49	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0102983_49	UniRef90	UniRef90_R5L1M5	DNA-binding helix-turn-helix / peptidase S24-like multi-domain protein	NA
UHGV-0102983_49	eggNOG-mapper	796940.HMPREF9628_00178	Peptidase S24-like	NA
UHGV-0102983_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102983_49	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0102983_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0102983_49	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0102983_50	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0102983_50	UniRef90	UniRef90_A0A415L489	NA	NA
UHGV-0102983_50	eggNOG-mapper	1449050.JNLE01000005_gene4075	NA	NA
UHGV-0102983_50	Pfam	PF12978	NA	DUF3862
UHGV-0102983_50	Structural annotation	PF12978, PF10571, MF_00925, NF008423, COG2913	NA	NA
UHGV-0102983_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0102983_51	PHROG	phrog_95	integrase	integration and excision
UHGV-0102983_51	UniRef90	UniRef90_A0A355JGU5	Recombinase family protein	NA
UHGV-0102983_51	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0102983_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0102983_51	Pfam	PF07508	Recombinase	Recombinase
UHGV-0102983_51	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0102983_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0102983_51	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0102983_52	PHROG	phrog_3314	NA	unknown function
UHGV-0102983_52	eggNOG-mapper	665956.HMPREF1032_03235	NA	NA
UHGV-0102983_53	PHROG	phrog_26582	NA	unknown function
UHGV-0102983_53	UniRef90	UniRef90_A0A7U9JY81	Terminase-like family protein	NA
UHGV-0102983_53	eggNOG-mapper	1235802.C823_04558	NA	NA
UHGV-0102983_53	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0102983_53	Structural annotation	PF03237, PF20441, MF_04146, NF033889, COG4626	NA	NA
UHGV-0102983_54	PHROG	phrog_2739	portal protein	head and packaging
UHGV-0102983_54	eggNOG-mapper	720555.BATR1942_07905	NA	NA
UHGV-0102983_54	Structural annotation	PF06074, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0102983_55	PHROG	phrog_3313	NA	unknown function