UHGV-0102984

Genome information

Genome length 37,872 bps

CDS count 59

Completeness 92.13% (high-quality)

geNomad score 0.9636

Prediction confidence Confident

Genome information
Genome ID	UHGV-0102984
vOTU ID	vOTU-060969
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_232298
BioSample	SAMEA3708525
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9636
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	78.95
Jumbo phage	No

Genome content
Genome length	37,872 bps
GC content	53.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.99%
Average CDS length	583.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0102984_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0102984_1	UniRef90	UniRef90_A0A3B9Q960	Integrase	NA
UHGV-0102984_1	eggNOG-mapper	469610.HMPREF0189_01073	DNA integration	NA
UHGV-0102984_1	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0102984_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0102984_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0102984_2	UniRef90	UniRef90_UPI00195FC0AC	NA	NA
UHGV-0102984_3	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0102984_3	PHROG	phrog_7	endolysin	lysis
UHGV-0102984_3	UniRef90	UniRef90_UPI00048D5EDD	lysozyme	NA
UHGV-0102984_3	eggNOG-mapper	1122599.AUGR01000011_gene4029	Phage lysozyme	NA
UHGV-0102984_3	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0102984_3	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0102984_3	HAMAP	MF_04110	Endolysin	NA
UHGV-0102984_3	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0102984_4	PHROG	phrog_920	holin	lysis
UHGV-0102984_5	PHROG	phrog_1443	NA	unknown function
UHGV-0102984_5	Structural annotation	PF10043, NF008028	NA	NA
UHGV-0102984_6	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0102984_6	UniRef90	UniRef90_UPI001D0AA195	phage tail assembly chaperone	NA
UHGV-0102984_6	eggNOG-mapper	742823.HMPREF9465_01858	Phage tail assembly chaperone protein	NA
UHGV-0102984_6	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0102984_6	Structural annotation	PF16778	NA	NA
UHGV-0102984_7	UniRef90	UniRef90_UPI00194F0D46	pectinesterase family protein	NA
UHGV-0102984_7	eggNOG-mapper	411464.DESPIG_00858	NA	NA
UHGV-0102984_8	UniRef90	UniRef90_UPI00194F0D46	pectinesterase family protein	NA
UHGV-0102984_8	eggNOG-mapper	563192.HMPREF0179_03273	NA	NA
UHGV-0102984_9	PHROG	phrog_203	tail protein	tail
UHGV-0102984_9	UniRef90	UniRef90_UPI000F60B3C5	NA	NA
UHGV-0102984_9	eggNOG-mapper	883.DvMF_0750	NA	NA
UHGV-0102984_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0102984_9	COG	COG3778	NA	NA
UHGV-0102984_9	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0102984_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0102984_10	UniRef90	UniRef90_A0A5B7ZKF1	Baseplate J/gp47 family protein	NA
UHGV-0102984_10	eggNOG-mapper	742821.HMPREF9464_01817	Baseplate J family protein	NA
UHGV-0102984_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0102984_10	COG	COG3299	NA	NA
UHGV-0102984_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0102984_11	PHROG	phrog_180	tail protein	tail
UHGV-0102984_11	UniRef90	UniRef90_A0A560D0U5	Phage gp46-like protein	NA
UHGV-0102984_11	eggNOG-mapper	570967.JMLV01000018_gene455	Phage protein GP46	NA
UHGV-0102984_11	Pfam	PF07409	NA	GP46
UHGV-0102984_11	COG	COG4381	NA	NA
UHGV-0102984_11	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0102984_12	UniRef90	UniRef90_E7H532	Prophage MuSo2	NA
UHGV-0102984_12	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0102984_12	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0102984_12	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0102984_12	COG	COG4384	NA	NA
UHGV-0102984_12	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0102984_13	PHROG	phrog_177	tail protein	tail
UHGV-0102984_13	UniRef90	UniRef90_A0A2W4U8P8	Baseplate protein	NA
UHGV-0102984_13	eggNOG-mapper	157783.LK03_15460	tail protein	NA
UHGV-0102984_13	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0102984_13	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0102984_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0102984_14	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0102984_14	UniRef90	UniRef90_A0A5B7ZLP1	DNA_circ_N domain-containing protein	NA
UHGV-0102984_14	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0102984_14	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0102984_14	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0102984_14	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0102984_15	PHROG	phrog_13338	NA	unknown function
UHGV-0102984_15	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-0102984_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0102984_15	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0102984_16	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0102984_17	PHROG	phrog_185	tail tube protein	tail
UHGV-0102984_17	UniRef90	UniRef90_A0A6L6YJW8	Phage tail protein	NA
UHGV-0102984_17	eggNOG-mapper	90371.CY43_10585	phage tail	NA
UHGV-0102984_17	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0102984_17	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0102984_18	PHROG	phrog_165	tail sheath	tail
UHGV-0102984_18	UniRef90	UniRef90_UPI0016607B39	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0102984_18	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0102984_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0102984_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0102984_18	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0102984_18	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0102984_19	PHROG	phrog_209	portal protein	head and packaging
UHGV-0102984_19	eggNOG-mapper	29486.NJ56_17665	NA	NA
UHGV-0102984_19	Structural annotation	PF09646	NA	NA
UHGV-0102984_20	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0102984_20	UniRef90	UniRef90_A0A1Y0FI51	Aminotransferase	NA
UHGV-0102984_20	Structural annotation	TIGR01725	NA	NA
UHGV-0102984_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0102984_21	UniRef90	UniRef90_UPI0007E2F3D8	phage head closure protein	NA
UHGV-0102984_21	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0102984_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0102984_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0102984_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0102984_22	UniRef90	UniRef90_UPI0006713445	head-tail connector protein	NA
UHGV-0102984_22	eggNOG-mapper	1121871.AUAT01000022_gene1852	Phage gp6-like head-tail connector protein	NA
UHGV-0102984_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0102984_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0102984_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0102984_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0102984_23	UniRef90	UniRef90_UPI000671041A	phage major capsid protein	NA
UHGV-0102984_23	eggNOG-mapper	1005048.CFU_3365	Phage capsid family	NA
UHGV-0102984_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0102984_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0102984_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0102984_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0102984_24	KOfam	K06904	NA	NA
UHGV-0102984_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0102984_24	UniRef90	UniRef90_A0A6L6YJM7	HK97 family phage prohead protease	NA
UHGV-0102984_24	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-0102984_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0102984_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0102984_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0102984_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0102984_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0102984_25	UniRef90	UniRef90_UPI000670884E	phage portal protein	NA
UHGV-0102984_25	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0102984_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0102984_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0102984_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0102984_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0102984_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0102984_26	UniRef90	UniRef90_A0A6L6YGT4	Terminase large subunit	NA
UHGV-0102984_26	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0102984_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0102984_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0102984_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0102984_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0102984_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0102984_27	UniRef90	UniRef90_UPI000DE972B2	phage terminase small subunit P27 family	NA
UHGV-0102984_27	eggNOG-mapper	1485544.JQKP01000008_gene1674	Phage terminase, small subunit	NA
UHGV-0102984_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0102984_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0102984_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0102984_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0102984_28	PHROG	phrog_2232	NA	unknown function
UHGV-0102984_28	UniRef90	UniRef90_A0A6N8AI53	NA	NA
UHGV-0102984_28	eggNOG-mapper	216142.LT40_00195	NA	NA
UHGV-0102984_28	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0102984_28	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0102984_31	Structural annotation	PF06530, NF007225	NA	NA
UHGV-0102984_39	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0102984_39	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0102984_39	UniRef90	UniRef90_UPI00093F58F5	ATP-binding protein	NA
UHGV-0102984_39	eggNOG-mapper	469610.HMPREF0189_01096	IstB-like ATP binding protein	NA
UHGV-0102984_39	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0102984_39	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0102984_39	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0102984_40	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0102984_40	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0102984_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0102984_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0102984_41	UniRef90	UniRef90_UPI0013F63C2F	LexA family transcriptional regulator	NA
UHGV-0102984_41	eggNOG-mapper	1117958.PE143B_0121595	Peptidase S24-like	NA
UHGV-0102984_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0102984_41	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0102984_41	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0102984_41	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0102984_44	PHROG	phrog_1281	NA	unknown function
UHGV-0102984_44	UniRef90	UniRef90_A0A139JWD6	NA	NA
UHGV-0102984_44	eggNOG-mapper	742821.HMPREF9464_01844	Phage-associated protein	NA
UHGV-0102984_44	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0102984_44	COG	COG3600	NA	NA
UHGV-0102984_44	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0102984_49	PHROG	phrog_7839	NA	unknown function
UHGV-0102984_49	eggNOG-mapper	202954.BBNK01000034_gene3794	NA	NA
UHGV-0102984_49	Structural annotation	PF08860	NA	NA
UHGV-0102984_50	Structural annotation	NF041588	NA	NA
UHGV-0102984_53	PHROG	phrog_821	transcriptional regulator	transcription regulation
UHGV-0102984_53	UniRef90	UniRef90_UPI0013F5A34F	Rha family transcriptional regulator	NA
UHGV-0102984_53	eggNOG-mapper	742821.HMPREF9464_02166	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0102984_53	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0102984_53	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0102984_53	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0102984_53	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0102984_53	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0102984_55	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0102984_55	UniRef90	UniRef90_UPI0013F6967E	NA	NA
UHGV-0102984_55	eggNOG-mapper	1122211.JMLW01000007_gene80	NA	NA
UHGV-0102984_55	Pfam	PF10097	NA	DUF2335
UHGV-0102984_55	COG	COG5346	NA	NA
UHGV-0102984_57	PHROG	phrog_2449	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0102984_57	UniRef90	UniRef90_A0A849BDJ3	Phage recombination protein Bet	NA
UHGV-0102984_57	eggNOG-mapper	637389.Acaty_c1934	TIGRFAM Phage recombination protein Bet	NA
UHGV-0102984_57	Pfam	PF03837	RecT family	RecT
UHGV-0102984_57	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0102984_57	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA