UHGV-0103056

Genome information

Genome length 36,046 bps

CDS count 53

Completeness 88.34% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103056
vOTU ID	vOTU-027134
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_226034
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.54
Jumbo phage	No

Genome content
Genome length	36,046 bps
GC content	45.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.65%
Average CDS length	641.09 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103056_2	eggNOG-mapper	742740.HMPREF9474_03519	ATPase involved in DNA repair	NA
UHGV-0103056_2	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0103056_3	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-0103056_4	PHROG	phrog_18725	NA	unknown function
UHGV-0103056_4	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-0103056_5	PHROG	phrog_13879	NA	unknown function
UHGV-0103056_5	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0103056_5	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0103056_6	PHROG	phrog_1194	NA	unknown function
UHGV-0103056_6	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0103056_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0103056_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0103056_7	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0103056_7	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0103056_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0103056_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0103056_9	PHROG	phrog_8355	NA	unknown function
UHGV-0103056_9	UniRef90	UniRef90_UPI0011579C35	Gp15 family bacteriophage protein	NA
UHGV-0103056_9	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0103056_9	Structural annotation	PF06854	NA	NA
UHGV-0103056_10	PHROG	phrog_8300	NA	unknown function
UHGV-0103056_10	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0103056_10	Structural annotation	PF06854	NA	NA
UHGV-0103056_11	PHROG	phrog_820	major tail protein	tail
UHGV-0103056_11	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0103056_11	COG	COG5492	NA	NA
UHGV-0103056_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0103056_12	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0103056_12	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0103056_12	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0103056_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0103056_12	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0103056_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0103056_13	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0103056_14	PHROG	phrog_8710	NA	unknown function
UHGV-0103056_14	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0103056_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0103056_15	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0103056_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0103056_16	UniRef90	UniRef90_A0A3R6QST7	Phage capsid protein	NA
UHGV-0103056_16	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0103056_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0103056_17	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0103056_17	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0103056_18	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0103056_18	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0103056_18	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0103056_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0103056_20	UniRef90	UniRef90_UPI000E43C4DB	ADP-ribosyltransferase domain-containing protein	NA
UHGV-0103056_20	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0103056_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103056_20	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0103056_20	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0103056_20	Structural annotation	PF06152, PF03496, MF_04139, NF040688	NA	NA
UHGV-0103056_22	PHROG	phrog_25639	NA	unknown function
UHGV-0103056_22	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0103056_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0103056_23	UniRef90	UniRef90_A0A3R6LPA5	Capsid protein	NA
UHGV-0103056_23	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0103056_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0103056_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0103056_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103056_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0103056_24	UniRef90	UniRef90_A0A3R6QNE9	Terminase	NA
UHGV-0103056_24	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0103056_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103056_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0103056_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0103056_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0103056_25	UniRef90	UniRef90_UPI000E4E3378	terminase small subunit	NA
UHGV-0103056_25	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-0103056_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0103056_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0103056_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0103056_27	UniRef90	UniRef90_M5T4G4	Putative membrane protein	NA
UHGV-0103056_27	eggNOG-mapper	595460.RRSWK_03491	NA	NA
UHGV-0103056_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0103056_28	UniRef90	UniRef90_UPI000836D5C7	RNA polymerase subunit sigma-70	NA
UHGV-0103056_28	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-0103056_28	Structural annotation	PF02996	NA	NA
UHGV-0103056_29	PHROG	phrog_16126	NA	unknown function
UHGV-0103056_36	Structural annotation	MF_00773	NA	NA
UHGV-0103056_37	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0103056_37	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0103056_37	UniRef90	UniRef90_A0A416C481	ATP-dependent helicase	NA
UHGV-0103056_37	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0103056_37	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0103056_37	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0103056_37	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0103056_37	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0103056_37	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0103056_38	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0103056_38	UniRef90	UniRef90_UPI001898FC73	VRR-NUC domain-containing protein	NA
UHGV-0103056_38	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-0103056_38	Structural annotation	PF01870, MF_01490, NF002585, COG1591	NA	NA
UHGV-0103056_39	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0103056_39	UniRef90	UniRef90_A0A3R6LHI7	Virulence-associated protein E	NA
UHGV-0103056_39	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-0103056_39	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0103056_39	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0103056_39	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0103056_40	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0103056_40	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0103056_40	UniRef90	UniRef90_A0A3R6J841	POLAc domain-containing protein	NA
UHGV-0103056_40	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-0103056_40	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0103056_40	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0103056_40	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0103056_41	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0103056_41	UniRef90	UniRef90_A0A3R6MD20	NA	NA
UHGV-0103056_41	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-0103056_41	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0103056_41	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0103056_42	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0103056_42	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0103056_42	UniRef90	UniRef90_A0A3R6MYE7	NA	NA
UHGV-0103056_42	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-0103056_42	Pfam	PF10926	NA	DUF2800
UHGV-0103056_42	COG	COG2887	RecB family exonuclease	NA
UHGV-0103056_42	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0103056_43	PHROG	phrog_22695	NA	unknown function
UHGV-0103056_43	eggNOG-mapper	1089548.KI783301_gene2636	NA	NA
UHGV-0103056_44	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0103056_44	UniRef90	UniRef90_A0A416C464	PC4 domain-containing protein	NA
UHGV-0103056_44	eggNOG-mapper	1408423.JHYA01000005_gene1816	Transcriptional Coactivator p15 (PC4)	NA
UHGV-0103056_44	COG	COG4443	NA	NA
UHGV-0103056_44	Structural annotation	COG4443	NA	NA
UHGV-0103056_45	PHROG	phrog_3777	NA	unknown function
UHGV-0103056_45	UniRef90	UniRef90_A0A3R6RW84	NA	NA
UHGV-0103056_45	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0103056_45	Pfam	PF12957	NA	DUF3846
UHGV-0103056_45	Structural annotation	PF12957	NA	NA
UHGV-0103056_47	UniRef90	UniRef90_A0A3R6UQG0	DNA-binding protein	NA
UHGV-0103056_47	eggNOG-mapper	478749.BRYFOR_07577	Helix-turn-helix domain	NA
UHGV-0103056_47	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0103056_47	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0103056_47	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0103056_49	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0103056_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103056_49	UniRef90	UniRef90_A0A416G608	XRE family transcriptional regulator	NA
UHGV-0103056_49	eggNOG-mapper	1304866.K413DRAFT_0833	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0103056_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103056_49	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0103056_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0103056_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103056_50	UniRef90	UniRef90_A0A6N7WA07	Helix-turn-helix transcriptional regulator	NA
UHGV-0103056_50	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0103056_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103056_50	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0103056_50	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0103056_51	PHROG	phrog_87	metallo-protease	other
UHGV-0103056_51	UniRef90	UniRef90_R5IRU3	Predicted Zn peptidase	NA
UHGV-0103056_51	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0103056_51	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0103056_51	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0103056_51	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0103056_52	PHROG	phrog_1847	NA	unknown function
UHGV-0103056_52	UniRef90	UniRef90_A0A1Y4RD72	ATPase	NA
UHGV-0103056_52	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0103056_52	Pfam	PF13250	NA	DUF4041
UHGV-0103056_52	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0103056_52	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0103056_52	Structural annotation	PF13250, PF19824	NA	NA