UHGV-0103117

Genome information

Genome length 39,719 bps

CDS count 52

Completeness 76.92% (medium-quality)

geNomad score 0.9635

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103117
vOTU ID	vOTU-016828
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_211354
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9635
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.71
Jumbo phage	No

Genome content
Genome length	39,719 bps
GC content	54.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.20%
Average CDS length	692.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103117_1	UniRef90	UniRef90_UPI000AE5279C	helix-turn-helix transcriptional regulator	NA
UHGV-0103117_1	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0103117_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0103117_1	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0103117_4	Structural annotation	PF15582, MF_00791, NF041178, COG2847	NA	NA
UHGV-0103117_5	PHROG	phrog_310	transposase	integration and excision
UHGV-0103117_5	UniRef90	UniRef90_A0A6N8H399	MerR family transcriptional regulator	NA
UHGV-0103117_5	eggNOG-mapper	411471.SUBVAR_07010	Mu transposase, C-terminal	NA
UHGV-0103117_5	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0103117_5	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0103117_5	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0103117_5	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0103117_6	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0103117_6	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0103117_6	UniRef90	UniRef90_A0A6N8H4X2	ATP-binding protein	NA
UHGV-0103117_6	eggNOG-mapper	411471.SUBVAR_07009	AAA domain	NA
UHGV-0103117_6	Pfam	PF13401	AAA domain	AAA_22
UHGV-0103117_6	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0103117_8	PHROG	phrog_5671	NA	unknown function
UHGV-0103117_8	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-0103117_9	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0103117_9	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-0103117_9	eggNOG-mapper	411471.SUBVAR_07006	Bacteriophage Mu Gam like protein	NA
UHGV-0103117_9	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0103117_9	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0103117_9	Structural annotation	PF07352, COG4396	NA	NA
UHGV-0103117_11	PHROG	phrog_286	NA	unknown function
UHGV-0103117_11	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-0103117_11	eggNOG-mapper	411471.SUBVAR_07005	NA	NA
UHGV-0103117_11	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0103117_11	Structural annotation	PF06252	NA	NA
UHGV-0103117_12	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0103117_12	UniRef90	UniRef90_A0A6N8H2N1	DNA-binding protein	NA
UHGV-0103117_12	eggNOG-mapper	411471.SUBVAR_07004	Mor transcription activator	NA
UHGV-0103117_12	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0103117_12	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0103117_12	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0103117_13	PHROG	phrog_462	lipoprotein	other
UHGV-0103117_13	eggNOG-mapper	411471.SUBVAR_07003	NA	NA
UHGV-0103117_14	PHROG	phrog_25462	NA	unknown function
UHGV-0103117_14	UniRef90	UniRef90_A0A6N8H1D3	Type VI secretion protein	NA
UHGV-0103117_14	eggNOG-mapper	742733.HMPREF9469_02885	NA	NA
UHGV-0103117_14	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0103117_15	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0103117_15	UniRef90	UniRef90_A0A6N8H2N8	NA	NA
UHGV-0103117_15	eggNOG-mapper	411471.SUBVAR_07001	NA	NA
UHGV-0103117_15	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0103117_15	Structural annotation	PF11985	NA	NA
UHGV-0103117_16	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0103117_16	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0103117_16	UniRef90	UniRef90_A0A6N8H0F4	NGN domain-containing protein	NA
UHGV-0103117_16	eggNOG-mapper	411471.SUBVAR_07000	Transcription termination factor nusG	NA
UHGV-0103117_16	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0103117_16	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0103117_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103117_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0103117_18	UniRef90	UniRef90_A0A6N8H4Y1	PBSX family phage terminase large subunit	NA
UHGV-0103117_18	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-0103117_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0103117_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0103117_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0103117_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103117_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0103117_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0103117_20	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-0103117_20	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0103117_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0103117_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0103117_21	UniRef90	UniRef90_UPI00196795ED	phage minor capsid protein	NA
UHGV-0103117_21	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0103117_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103117_21	COG	COG2369	NA	NA
UHGV-0103117_21	Structural annotation	PF06152, PF07737, TIGR01641, COG2369	NA	NA
UHGV-0103117_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0103117_24	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-0103117_24	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-0103117_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0103117_24	Structural annotation	PF06810	NA	NA
UHGV-0103117_25	PHROG	phrog_422	major head protein	head and packaging
UHGV-0103117_25	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0103117_25	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0103117_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0103117_27	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0103117_28	Structural annotation	PF20536	NA	NA
UHGV-0103117_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0103117_29	UniRef90	UniRef90_UPI001967B4B3	minor capsid protein	NA
UHGV-0103117_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0103117_29	Structural annotation	PF11114	NA	NA
UHGV-0103117_30	PHROG	phrog_3266	tail completion	connector
UHGV-0103117_30	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0103117_30	Structural annotation	PF08873	NA	NA
UHGV-0103117_31	PHROG	phrog_3099	NA	unknown function
UHGV-0103117_31	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-0103117_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0103117_32	PHROG	phrog_11299	NA	unknown function
UHGV-0103117_32	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-0103117_32	Structural annotation	PF10666	NA	NA
UHGV-0103117_33	PHROG	phrog_706	NA	unknown function
UHGV-0103117_33	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-0103117_33	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-0103117_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0103117_33	Structural annotation	PF06854	NA	NA
UHGV-0103117_34	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0103117_34	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-0103117_34	COG	COG1511	NA	NA
UHGV-0103117_35	PHROG	phrog_1194	NA	unknown function
UHGV-0103117_35	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0103117_35	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0103117_36	PHROG	phrog_13879	NA	unknown function
UHGV-0103117_36	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0103117_36	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0103117_37	PHROG	phrog_18725	NA	unknown function
UHGV-0103117_37	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0103117_38	PHROG	phrog_13589	NA	unknown function
UHGV-0103117_38	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0103117_38	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0103117_39	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0103117_39	Structural annotation	PF10651	NA	NA
UHGV-0103117_40	PHROG	phrog_17147	NA	unknown function
UHGV-0103117_40	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-0103117_41	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0103117_41	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0103117_41	UniRef90	UniRef90_A0A348T010	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0103117_41	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0103117_41	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0103117_41	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0103117_43	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0103117_43	PHROG	phrog_14988	peptidase	other
UHGV-0103117_43	UniRef90	UniRef90_A0A2V2FF85	Peptidase M23	NA
UHGV-0103117_43	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0103117_43	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0103117_43	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0103117_43	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0103117_44	PHROG	phrog_13256	NA	unknown function
UHGV-0103117_44	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0103117_45	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0103117_45	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0103117_45	UniRef90	UniRef90_UPI001C3B62EA	DNA adenine methylase	NA
UHGV-0103117_45	eggNOG-mapper	411471.SUBVAR_06973	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0103117_45	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0103117_45	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0103117_45	COG	COG0338	DNA-adenine methylase	NA
UHGV-0103117_45	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0103117_46	KOfam	K14059	int; integrase	NA
UHGV-0103117_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0103117_46	UniRef90	UniRef90_R0A9M2	Tyr recombinase domain-containing protein	NA
UHGV-0103117_46	eggNOG-mapper	411483.FAEPRAA2165_00520	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0103117_46	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0103117_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103117_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0103117_46	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0103117_47	KOfam	K14059	int; integrase	NA
UHGV-0103117_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0103117_47	UniRef90	UniRef90_A0A174VQF7	Integrase	NA
UHGV-0103117_47	eggNOG-mapper	622312.ROSEINA2194_04204	Belongs to the 'phage' integrase family	NA
UHGV-0103117_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0103117_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103117_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0103117_47	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0103117_48	UniRef90	UniRef90_A0A2T4TEL0	DNA-binding protein	NA
UHGV-0103117_48	eggNOG-mapper	411483.FAEPRAA2165_00522	NA	NA
UHGV-0103117_48	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0103117_49	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0103117_49	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0103117_49	UniRef90	UniRef90_A0A379CI55	mRNA interferase MazF	NA
UHGV-0103117_49	eggNOG-mapper	411483.FAEPRAA2165_00523	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0103117_49	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0103117_49	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0103117_49	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0103117_50	eggNOG-mapper	796945.HMPREF1145_0529	NA	NA
UHGV-0103117_51	KOfam	K06926	NA	NA
UHGV-0103117_51	PHROG	phrog_5836	NA	unknown function
UHGV-0103117_51	UniRef90	UniRef90_G9WNJ6	ATPase_AAA_core domain-containing protein	NA
UHGV-0103117_51	eggNOG-mapper	411483.FAEPRAA2165_00527	AAA domain, putative AbiEii toxin, Type IV TA system	NA
UHGV-0103117_51	PADLOC	AbiLi-1	AbiLi	Abi
UHGV-0103117_51	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-0103117_51	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0103117_51	Structural annotation	PF13304, MF_00365, NF041760, COG1195	NA	NA
UHGV-0103117_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0103117_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103117_52	UniRef90	UniRef90_UPI001F2C2F89	helix-turn-helix domain-containing protein	NA
UHGV-0103117_52	eggNOG-mapper	411483.FAEPRAA2165_00529	Helix-turn-helix XRE-family like proteins	NA
UHGV-0103117_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0103117_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103117_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0103117_52	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA