UHGV-0103127

Genome information

Genome length 38,081 bps

CDS count 64

Completeness 89.69% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103127
vOTU ID	vOTU-038727
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_204291
BioSample	SAMEA3449424
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.76
Jumbo phage	No

Genome content
Genome length	38,081 bps
GC content	53.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.59%
Average CDS length	537.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103127_2	KOfam	K07603	COL17A, BP180; collagen type XVII alpha	NA
UHGV-0103127_2	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0103127_2	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0103127_3	PHROG	phrog_20274	NA	unknown function
UHGV-0103127_3	UniRef90	UniRef90_UPI001C3F12B9	putative ABC transporter permease	NA
UHGV-0103127_3	eggNOG-mapper	1298920.KI911353_gene4880	NA	NA
UHGV-0103127_3	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0103127_3	COG	COG4905	NA	NA
UHGV-0103127_3	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0103127_4	eggNOG-mapper	1297617.JPJD01000014_gene875	NA	NA
UHGV-0103127_4	Structural annotation	PF14301	NA	NA
UHGV-0103127_5	eggNOG-mapper	552398.HMPREF0866_02181	NA	NA
UHGV-0103127_6	PHROG	phrog_18725	NA	unknown function
UHGV-0103127_6	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0103127_7	PHROG	phrog_13879	NA	unknown function
UHGV-0103127_7	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0103127_7	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0103127_8	PHROG	phrog_1194	NA	unknown function
UHGV-0103127_8	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0103127_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0103127_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0103127_9	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0103127_9	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0103127_9	COG	COG1511	NA	NA
UHGV-0103127_9	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0103127_10	eggNOG-mapper	1123009.AUID01000002_gene2091	Host cell surface-exposed lipoprotein	NA
UHGV-0103127_10	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0103127_10	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0103127_11	PHROG	phrog_706	NA	unknown function
UHGV-0103127_11	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0103127_11	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0103127_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0103127_11	Structural annotation	PF06854	NA	NA
UHGV-0103127_12	PHROG	phrog_11299	NA	unknown function
UHGV-0103127_12	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0103127_12	Structural annotation	PF10666	NA	NA
UHGV-0103127_13	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0103127_13	UniRef90	UniRef90_A0A0V8QIT3	Rha family transcriptional regulator	NA
UHGV-0103127_13	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0103127_13	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0103127_13	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0103127_13	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0103127_13	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0103127_14	PHROG	phrog_3099	NA	unknown function
UHGV-0103127_14	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0103127_14	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0103127_15	PHROG	phrog_3266	tail completion	connector
UHGV-0103127_15	eggNOG-mapper	411490.ANACAC_00773	NA	NA
UHGV-0103127_15	Structural annotation	PF12691	NA	NA
UHGV-0103127_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0103127_16	UniRef90	UniRef90_UPI0011781EF8	minor capsid protein	NA
UHGV-0103127_16	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0103127_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0103127_16	Structural annotation	PF11114	NA	NA
UHGV-0103127_17	PHROG	phrog_3366	NA	unknown function
UHGV-0103127_17	eggNOG-mapper	645991.Sgly_0343	NA	NA
UHGV-0103127_17	Pfam	PF20536	NA	DUF6751
UHGV-0103127_17	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0103127_18	PHROG	phrog_283	major head protein	head and packaging
UHGV-0103127_18	UniRef90	UniRef90_A0A1C6I0L7	p22 coat protein-gene protein 5	NA
UHGV-0103127_18	eggNOG-mapper	1499683.CCFF01000014_gene3908	P22 coat protein - gene protein 5	NA
UHGV-0103127_18	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0103127_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0103127_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0103127_19	UniRef90	UniRef90_UPI001F379BB0	phage scaffolding protein	NA
UHGV-0103127_19	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-0103127_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0103127_19	Structural annotation	PF06810	NA	NA
UHGV-0103127_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0103127_21	UniRef90	UniRef90_A0A2V2FIV7	Phage capsid protein	NA
UHGV-0103127_21	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0103127_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103127_21	COG	COG2369	NA	NA
UHGV-0103127_21	Structural annotation	PF06152	NA	NA
UHGV-0103127_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0103127_22	UniRef90	UniRef90_A0A858BRS2	Phage portal protein	NA
UHGV-0103127_22	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0103127_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0103127_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0103127_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103127_23	PHROG	phrog_29775	NA	unknown function
UHGV-0103127_23	UniRef90	UniRef90_J4WCU7	Terminase, large subunit, PBSX family	NA
UHGV-0103127_23	eggNOG-mapper	936375.HMPREF1152_1069	Phage terminase, large subunit, PBSX family	NA
UHGV-0103127_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0103127_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103127_23	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0103127_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0103127_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0103127_24	UniRef90	UniRef90_A0A7X5E1Q4	Terminase small subunit	NA
UHGV-0103127_24	eggNOG-mapper	997346.HMPREF9374_1124	Terminase small subunit	NA
UHGV-0103127_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0103127_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0103127_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0103127_25	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0103127_25	UniRef90	UniRef90_UPI001C11D2DB	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0103127_25	eggNOG-mapper	903814.ELI_3150	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0103127_25	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0103127_25	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0103127_25	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0103127_26	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0103127_26	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0103127_26	UniRef90	UniRef90_UPI001C0F3D37	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0103127_26	eggNOG-mapper	1120973.AQXL01000090_gene2616	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0103127_26	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0103127_26	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0103127_26	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0103127_27	PHROG	phrog_21498	NA	unknown function
UHGV-0103127_27	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0103127_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0103127_27	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0103127_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0103127_28	UniRef90	UniRef90_A0A6A8VJ07	NA	NA
UHGV-0103127_28	eggNOG-mapper	1235793.C809_01914	sigma factor activity	NA
UHGV-0103127_28	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0103127_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0103127_28	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0103127_29	PHROG	phrog_5781	NA	unknown function
UHGV-0103127_29	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-0103127_29	eggNOG-mapper	40631.O64365_BPN15	NA	NA
UHGV-0103127_29	Pfam	PF14359	NA	DUF4406
UHGV-0103127_29	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0103127_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0103127_31	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0103127_31	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0103127_31	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0103127_33	UniRef90	UniRef90_UPI00164C2CD3	zinc finger domain-containing protein	NA
UHGV-0103127_37	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0103127_37	UniRef90	UniRef90_A0A516MDE6	Putative adenine modification enzyme	NA
UHGV-0103127_37	eggNOG-mapper	411490.ANACAC_02385	COG NOG12663 non supervised orthologous group	NA
UHGV-0103127_37	Structural annotation	PF14236, MF_02210, NF007025, COG1247	NA	NA
UHGV-0103127_38	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0103127_38	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-0103127_38	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0103127_38	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0103127_38	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0103127_38	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0103127_38	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0103127_41	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0103127_41	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0103127_41	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0103127_41	Pfam	PF06048	NA	DUF927
UHGV-0103127_41	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0103127_41	COG	COG5519	NA	NA
UHGV-0103127_41	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0103127_42	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0103127_42	PHROG	phrog_11992	NA	unknown function
UHGV-0103127_42	UniRef90	UniRef90_A0A2U1BEF8	CHC2-type zinc finger protein	NA
UHGV-0103127_42	eggNOG-mapper	742738.HMPREF9460_02494	CHC2 zinc finger	NA
UHGV-0103127_42	PADLOC	drt-cluster192	DRT	DRT
UHGV-0103127_42	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0103127_42	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0103127_42	Structural annotation	PF01807	NA	NA
UHGV-0103127_43	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0103127_43	UniRef90	UniRef90_A0A6N3FCL8	ERCC4 domain-containing protein	NA
UHGV-0103127_43	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0103127_43	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0103127_43	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0103127_43	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0103127_44	PHROG	phrog_18107	NA	unknown function
UHGV-0103127_44	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0103127_44	Structural annotation	PF05037	NA	NA
UHGV-0103127_45	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0103127_45	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0103127_45	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0103127_45	Pfam	PF13479	AAA domain	AAA_24
UHGV-0103127_45	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0103127_48	Structural annotation	PF09943	NA	NA
UHGV-0103127_50	UniRef90	UniRef90_A0A4R4FEG4	Pentapeptide repeat-containing protein	NA
UHGV-0103127_50	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0103127_50	Structural annotation	PF00805	NA	NA
UHGV-0103127_51	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0103127_51	UniRef90	UniRef90_A0A1C6J857	Transglycosylase SLT domain	NA
UHGV-0103127_51	eggNOG-mapper	614083.AWQR01000030_gene2816	PFAM Lytic transglycosylase catalytic	NA
UHGV-0103127_51	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0103127_51	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0103127_57	Structural annotation	PF09639, TIGR04176	NA	NA
UHGV-0103127_59	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0103127_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103127_59	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0103127_59	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0103127_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103127_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0103127_59	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0103127_61	PHROG	phrog_33872	NA	unknown function
UHGV-0103127_62	PHROG	phrog_3243	NA	unknown function
UHGV-0103127_62	eggNOG-mapper	1121287.AUMU01000005_gene3290	NA	NA
UHGV-0103127_62	Structural annotation	PF15072, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0103127_63	KOfam	K14059	int; integrase	NA
UHGV-0103127_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0103127_63	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-0103127_63	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0103127_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103127_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0103127_63	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0103127_64	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0103127_64	PHROG	phrog_95	integrase	integration and excision
UHGV-0103127_64	UniRef90	UniRef90_UPI00143CCC66	recombinase family protein	NA
UHGV-0103127_64	eggNOG-mapper	742738.HMPREF9460_01405	Resolvase, N terminal domain	NA
UHGV-0103127_64	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0103127_64	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA