UHGV-0103154

Genome information

Genome length 37,793 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103154
vOTU ID	vOTU-062766
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_232747
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.81
Jumbo phage	No

Genome content
Genome length	37,793 bps
GC content	42.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.17%
Average CDS length	559.69 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103154_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0103154_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0103154_1	UniRef90	UniRef90_A7B3P5	Resolvase, N-terminal domain protein	NA
UHGV-0103154_1	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0103154_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0103154_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0103154_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0103154_2	PHROG	phrog_7974	NA	unknown function
UHGV-0103154_2	UniRef90	UniRef90_A7B3P6	NA	NA
UHGV-0103154_2	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0103154_2	Pfam	PF14020	NA	DUF4236
UHGV-0103154_2	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0103154_2	Structural annotation	PF14020, PF02368, COG1721	NA	NA
UHGV-0103154_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0103154_4	UniRef90	UniRef90_A0A2N5NVN2	HTH cro/C1-type domain-containing protein	NA
UHGV-0103154_4	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0103154_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0103154_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0103154_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0103154_6	PHROG	phrog_28292	NA	unknown function
UHGV-0103154_6	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0103154_6	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0103154_7	PHROG	phrog_8130	NA	unknown function
UHGV-0103154_7	UniRef90	UniRef90_A0A2N5NVJ1	T5orf172 domain-containing protein	NA
UHGV-0103154_7	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0103154_7	COG	COG0790	TPR repeat	NA
UHGV-0103154_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0103154_8	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0103154_8	UniRef90	UniRef90_A0A2N5NVG8	Bro-N domain-containing protein	NA
UHGV-0103154_8	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-0103154_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0103154_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0103154_8	COG	COG3617	Prophage antirepressor	NA
UHGV-0103154_8	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0103154_9	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0103154_13	PHROG	phrog_30234	NA	unknown function
UHGV-0103154_13	eggNOG-mapper	411461.DORFOR_00021	NA	NA
UHGV-0103154_14	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0103154_14	UniRef90	UniRef90_UPI001F180A96	NA	NA
UHGV-0103154_14	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0103154_14	Pfam	PF06378	NA	DUF1071
UHGV-0103154_14	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0103154_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0103154_15	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0103154_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0103154_16	PHROG	phrog_7566	NA	unknown function
UHGV-0103154_16	UniRef90	UniRef90_A0A2N5NVH0	Phosphoenolpyruvate carboxykinase	NA
UHGV-0103154_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0103154_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0103154_17	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0103154_17	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0103154_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0103154_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0103154_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0103154_18	PHROG	phrog_1163	NA	unknown function
UHGV-0103154_18	UniRef90	UniRef90_A0A415S878	Replication protein	NA
UHGV-0103154_18	eggNOG-mapper	1042163.BRLA_c031420	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0103154_18	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0103154_18	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0103154_18	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0103154_18	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0103154_18	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3756	NA	NA
UHGV-0103154_19	PHROG	phrog_2600	NA	unknown function
UHGV-0103154_19	eggNOG-mapper	1178540.BA70_18565	NA	NA
UHGV-0103154_21	eggNOG-mapper	97139.C824_00033	NA	NA
UHGV-0103154_25	PHROG	phrog_8684	NA	unknown function
UHGV-0103154_25	UniRef90	UniRef90_F7K050	YopX domain-containing protein	NA
UHGV-0103154_25	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0103154_25	Pfam	PF09643	YopX protein	YopX
UHGV-0103154_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0103154_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0103154_26	Structural annotation	PF02895	NA	NA
UHGV-0103154_27	UniRef90	UniRef90_A0A395V1U8	Restriction alleviation protein, Lar family	NA
UHGV-0103154_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0103154_27	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0103154_29	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0103154_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0103154_31	UniRef90	UniRef90_A0A7X4ZQ48	RNA polymerase subunit sigma-70	NA
UHGV-0103154_31	eggNOG-mapper	397288.C806_00130	NA	NA
UHGV-0103154_31	Structural annotation	PF02996	NA	NA
UHGV-0103154_32	PHROG	phrog_8680	NA	unknown function
UHGV-0103154_32	UniRef90	UniRef90_UPI001D046250	NA	NA
UHGV-0103154_32	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0103154_32	Pfam	PF14386	NA	DUF4417
UHGV-0103154_32	Structural annotation	PF14386	NA	NA
UHGV-0103154_34	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0103154_34	UniRef90	UniRef90_UPI001D05A70C	transposase	NA
UHGV-0103154_34	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0103154_34	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0103154_34	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0103154_34	Structural annotation	PF07141	NA	NA
UHGV-0103154_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103154_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0103154_35	UniRef90	UniRef90_A7B3T0	Phage terminase, large subunit, PBSX family	NA
UHGV-0103154_35	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0103154_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0103154_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103154_35	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0103154_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0103154_36	UniRef90	UniRef90_A7B3T1	Putative phage minor capsid protein	NA
UHGV-0103154_36	eggNOG-mapper	411470.RUMGNA_02212	NA	NA
UHGV-0103154_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0103154_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0103154_37	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-0103154_37	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0103154_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103154_37	COG	COG2369	NA	NA
UHGV-0103154_37	Structural annotation	PF06152	NA	NA
UHGV-0103154_38	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0103154_38	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0103154_39	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-0103154_41	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0103154_41	Structural annotation	NF040910	NA	NA
UHGV-0103154_42	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0103154_42	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0103154_42	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0103154_42	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0103154_42	Structural annotation	PF06810	NA	NA
UHGV-0103154_43	PHROG	phrog_422	major head protein	head and packaging
UHGV-0103154_43	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0103154_43	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0103154_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0103154_44	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0103154_45	PHROG	phrog_3366	NA	unknown function
UHGV-0103154_45	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0103154_45	Pfam	PF20536	NA	DUF6751
UHGV-0103154_45	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0103154_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0103154_46	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0103154_46	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0103154_46	Structural annotation	PF11114	NA	NA
UHGV-0103154_47	PHROG	phrog_3266	tail completion	connector
UHGV-0103154_47	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0103154_47	Structural annotation	PF12691	NA	NA
UHGV-0103154_48	PHROG	phrog_3099	NA	unknown function
UHGV-0103154_48	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0103154_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0103154_49	PHROG	phrog_4450	NA	unknown function
UHGV-0103154_49	UniRef90	UniRef90_A0A416RQL6	AP endonuclease	NA
UHGV-0103154_49	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0103154_49	Pfam	PF20378	NA	DUF6673
UHGV-0103154_49	Structural annotation	PF20378	NA	NA
UHGV-0103154_50	PHROG	phrog_706	NA	unknown function
UHGV-0103154_50	UniRef90	UniRef90_A7B3U5	Bacteriophage Gp15 protein	NA
UHGV-0103154_50	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0103154_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0103154_50	Structural annotation	PF06854	NA	NA
UHGV-0103154_51	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0103154_51	UniRef90	UniRef90_A0A8B3C0A6	TMP_3 domain-containing protein	NA
UHGV-0103154_51	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0103154_51	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0103154_51	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0103154_51	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0103154_51	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0103154_52	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0103154_52	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0103154_52	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0103154_52	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0103154_52	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0103154_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-0103154_52	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0103154_53	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0103154_53	UniRef90	UniRef90_UPI0004634EC1	collagen-like protein	NA
UHGV-0103154_53	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0103154_53	Structural annotation	PF14594, PF19081, MF_04116, TIGR01665, NF041894, COG4926	NA	NA
UHGV-0103154_54	PHROG	phrog_199	holin	lysis
UHGV-0103154_54	UniRef90	UniRef90_A0A2N5P5I5	Holin	NA
UHGV-0103154_54	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0103154_54	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0103154_54	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0103154_54	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0103154_54	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0103154_55	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0103154_55	PHROG	phrog_833	endolysin	lysis
UHGV-0103154_55	UniRef90	UniRef90_A0A3E4V7X4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0103154_55	eggNOG-mapper	411470.RUMGNA_03787	COG NOG33632 non supervised orthologous group	NA
UHGV-0103154_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0103154_55	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0103154_55	Structural annotation	PF01510, COG5632	NA	NA
UHGV-0103154_56	UniRef90	UniRef90_A0A3E4V8L0	XRE family transcriptional regulator	NA
UHGV-0103154_56	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0103154_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103154_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0103154_56	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0103154_57	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0103154_57	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0103154_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0103154_58	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0103154_60	KOfam	K02051	ABC.SN.S; NitT/TauT family transport system substrate-binding protein	NA
UHGV-0103154_60	UniRef90	UniRef90_R5UIA6	NMT1 domain-containing protein	NA
UHGV-0103154_60	eggNOG-mapper	411470.RUMGNA_03783	NMT1/THI5 like	NA
UHGV-0103154_60	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-0103154_60	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA
UHGV-0103154_61	UniRef90	UniRef90_A0A1C6A241	CD20-like family	NA
UHGV-0103154_61	eggNOG-mapper	411470.RUMGNA_03782	NA	NA
UHGV-0103154_62	eggNOG-mapper	1232453.BAIF02000051_gene1085	NA	NA