UHGV-0103201

Genome information

Genome length 57,303 bps

CDS count 94

Completeness 100.00% (complete)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103201
vOTU ID	vOTU-045473
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_227886
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.95
Jumbo phage	No

Genome content
Genome length	57,303 bps
GC content	49.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	94
CDS density	86.63%
Average CDS length	530.33 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103201_1	PHROG	phrog_3886	NA	unknown function
UHGV-0103201_1	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-0103201_2	KOfam	K03744	lemA; LemA protein	NA
UHGV-0103201_2	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0103201_2	UniRef90	UniRef90_A0A6N9P3N6	LemA family protein	NA
UHGV-0103201_2	eggNOG-mapper	657322.FPR_23420	LemA family	NA
UHGV-0103201_2	Pfam	PF04011	LemA family	LemA
UHGV-0103201_2	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0103201_2	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0103201_3	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0103201_3	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0103201_3	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0103201_3	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0103201_3	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0103201_3	COG	COG0305	Replicative DNA helicase	NA
UHGV-0103201_3	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0103201_4	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0103201_4	Pfam	PF19808	NA	DUF6291
UHGV-0103201_4	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0103201_4	Structural annotation	PF19808	NA	NA
UHGV-0103201_5	PHROG	phrog_7704	NA	unknown function
UHGV-0103201_5	UniRef90	UniRef90_A0A837F7R6	NA	NA
UHGV-0103201_5	eggNOG-mapper	1433287.X808_8690	NA	NA
UHGV-0103201_5	Pfam	PF04448	NA	DUF551
UHGV-0103201_5	Structural annotation	NF041588	NA	NA
UHGV-0103201_13	Structural annotation	PF16677	NA	NA
UHGV-0103201_14	Pfam	PF04448	NA	DUF551
UHGV-0103201_14	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0103201_17	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0103201_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0103201_17	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0103201_17	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0103201_17	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0103201_17	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0103201_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0103201_17	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0103201_20	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0103201_20	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0103201_20	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0103201_20	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0103201_24	PHROG	phrog_18107	NA	unknown function
UHGV-0103201_24	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0103201_24	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0103201_24	Structural annotation	PF05037	NA	NA
UHGV-0103201_25	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0103201_25	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0103201_25	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0103201_25	Pfam	PF13479	AAA domain	AAA_24
UHGV-0103201_25	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0103201_26	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0103201_26	Structural annotation	PF13451	NA	NA
UHGV-0103201_28	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0103201_28	eggNOG-mapper	1410633.JHWR01000008_gene1673	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0103201_28	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0103201_28	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0103201_28	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0103201_29	Structural annotation	PF14143	NA	NA
UHGV-0103201_30	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0103201_30	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0103201_33	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0103201_33	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0103201_33	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0103201_33	eggNOG-mapper	1449343.JQLQ01000002_gene1368	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0103201_33	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0103201_33	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0103201_33	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0103201_33	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0103201_33	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0103201_34	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0103201_34	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0103201_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103201_34	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0103201_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103201_35	UniRef90	UniRef90_A0A4Z0XXV8	HTH-type transcriptional regulator Xre	NA
UHGV-0103201_35	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0103201_35	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0103201_35	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0103201_36	Structural annotation	PF16311, NF038219	NA	NA
UHGV-0103201_39	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0103201_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103201_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0103201_39	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0103201_41	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0103201_41	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0103201_41	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0103201_41	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0103201_41	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0103201_41	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0103201_41	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0103201_42	PHROG	phrog_7704	NA	unknown function
UHGV-0103201_42	UniRef90	UniRef90_A0A316RLR0	NA	NA
UHGV-0103201_42	Pfam	PF04448	NA	DUF551
UHGV-0103201_42	Structural annotation	NF041588	NA	NA
UHGV-0103201_44	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0103201_44	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0103201_44	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0103201_44	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0103201_44	Pfam	PF13614	AAA domain	AAA_31
UHGV-0103201_44	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0103201_44	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0103201_45	Pfam	PF04448	NA	DUF551
UHGV-0103201_46	Structural annotation	PF07878	NA	NA
UHGV-0103201_48	PHROG	phrog_7070	NA	unknown function
UHGV-0103201_48	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-0103201_49	eggNOG-mapper	1415774.U728_858	NA	NA
UHGV-0103201_51	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0103201_52	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0103201_53	PHROG	phrog_16490	NA	unknown function
UHGV-0103201_53	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0103201_55	PHROG	phrog_21718	NA	unknown function
UHGV-0103201_58	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0103201_58	PHROG	phrog_366	tail fiber protein	tail
UHGV-0103201_58	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0103201_58	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0103201_58	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0103201_58	Structural annotation	PF10651	NA	NA
UHGV-0103201_59	PHROG	phrog_15303	NA	unknown function
UHGV-0103201_61	KOfam	K07273	acm; lysozyme	NA
UHGV-0103201_61	PHROG	phrog_291	endolysin	lysis
UHGV-0103201_61	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0103201_61	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0103201_61	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0103201_61	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0103201_61	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0103201_62	PHROG	phrog_2310	NA	unknown function
UHGV-0103201_63	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-0103201_63	COG	COG5492	NA	NA
UHGV-0103201_64	PHROG	phrog_18725	NA	unknown function
UHGV-0103201_64	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0103201_65	PHROG	phrog_13879	NA	unknown function
UHGV-0103201_65	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0103201_65	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0103201_65	Pfam	PF19789	NA	DUF6273
UHGV-0103201_65	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0103201_66	PHROG	phrog_1194	NA	unknown function
UHGV-0103201_66	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0103201_66	Pfam	PF20458	NA	DUF6711
UHGV-0103201_66	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0103201_67	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0103201_67	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0103201_67	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0103201_67	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0103201_68	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0103201_69	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0103201_69	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0103201_69	Pfam	PF16478	NA	DUF5055
UHGV-0103201_69	Structural annotation	PF16478	NA	NA
UHGV-0103201_70	PHROG	phrog_158	major tail protein	tail
UHGV-0103201_70	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0103201_70	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0103201_71	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0103201_73	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0103201_73	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0103201_74	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0103201_74	Structural annotation	TIGR01560	NA	NA
UHGV-0103201_75	PHROG	phrog_29	major head protein	head and packaging
UHGV-0103201_75	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0103201_75	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0103201_75	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0103201_75	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0103201_76	PHROG	phrog_909	major head protein	head and packaging
UHGV-0103201_78	PHROG	phrog_64	portal protein	head and packaging
UHGV-0103201_78	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0103201_78	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0103201_78	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0103201_78	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0103201_80	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0103201_80	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0103201_80	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0103201_80	COG	COG5410	NA	NA
UHGV-0103201_80	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0103201_82	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0103201_82	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0103201_82	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0103201_82	eggNOG-mapper	411469.EUBHAL_01860	Resolvase, N terminal domain	NA
UHGV-0103201_82	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0103201_82	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0103201_82	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0103201_83	Structural annotation	PF20075	NA	NA
UHGV-0103201_85	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0103201_86	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0103201_86	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0103201_86	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-0103201_86	eggNOG-mapper	1229751.R9QMT7_9CAUD	AntA/AntB antirepressor	NA
UHGV-0103201_86	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0103201_86	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0103201_86	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-0103201_88	Structural annotation	PF12869, MF_00720, NF040991, COG4085	NA	NA
UHGV-0103201_92	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0103201_94	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0103201_94	UniRef90	UniRef90_A0A373NZL0	RepA_N domain-containing protein	NA
UHGV-0103201_94	eggNOG-mapper	1042156.CXIVA_10080	Replication initiator protein A (RepA) N-terminus	NA
UHGV-0103201_94	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-0103201_94	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA