UHGV-0103218

Genome information

Genome length 35,227 bps

CDS count 52

Completeness 95.36% (high-quality)

geNomad score 0.9700

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103218
vOTU ID	vOTU-062241
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_220991
BioSample	SAMEA3541515
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9700
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.81
Jumbo phage	No

Genome content
Genome length	35,227 bps
GC content	41.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.31%
Average CDS length	617.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103218_1	KOfam	K02855	rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS	NA
UHGV-0103218_1	PHROG	phrog_11275	NA	unknown function
UHGV-0103218_1	UniRef90	UniRef90_K1SN18	Protein containing Helix-turn-helix, AraC domain protein (Fragment)	NA
UHGV-0103218_1	eggNOG-mapper	470145.BACCOP_03522	NA	NA
UHGV-0103218_1	Pfam	PF12833	Helix-turn-helix domain	HTH_18
UHGV-0103218_1	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0103218_2	KOfam	K07277	SAM50, TOB55, bamA; outer membrane protein insertion porin family	NA
UHGV-0103218_2	UniRef90	UniRef90_A0A412GRF3	Omp85 domain-containing protein	NA
UHGV-0103218_2	eggNOG-mapper	470145.BACCOP_03513	Outer membrane protein, OMP85 family	NA
UHGV-0103218_2	Pfam	PF01103	Omp85 superfamily domain	Omp85
UHGV-0103218_2	COG	COG4775	Outer membrane protein assembly factor BamA	NA
UHGV-0103218_3	PHROG	phrog_28785	NA	unknown function
UHGV-0103218_3	UniRef90	UniRef90_A0A174MSL2	Carboxypeptidase regulatory-like domain-containing protein	NA
UHGV-0103218_3	eggNOG-mapper	585394.RHOM_03935	Peptidoglycan binding domain protein	NA
UHGV-0103218_3	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0103218_3	Structural annotation	PF13620, TIGR02870, TIGR04134, COG2351	NA	NA
UHGV-0103218_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0103218_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0103218_4	UniRef90	UniRef90_C4Z7Z8	Site-specific recombinase	NA
UHGV-0103218_4	eggNOG-mapper	742765.HMPREF9457_02089	Resolvase, N terminal domain	NA
UHGV-0103218_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0103218_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0103218_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0103218_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0103218_4	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0103218_5	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0103218_5	UniRef90	UniRef90_A0A3R6X973	Abi family protein	NA
UHGV-0103218_5	eggNOG-mapper	397288.C806_00111	Abi-like protein	NA
UHGV-0103218_5	PADLOC	AbiD	AbiD	Abi
UHGV-0103218_5	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0103218_5	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0103218_5	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0103218_6	PHROG	phrog_38135	NA	unknown function
UHGV-0103218_6	UniRef90	UniRef90_A0A1Q6T359	NA	NA
UHGV-0103218_6	eggNOG-mapper	742723.HMPREF9477_00941	dextransucrase activity	NA
UHGV-0103218_6	Pfam	PF14020	NA	DUF4236
UHGV-0103218_6	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0103218_6	Structural annotation	PF14020	NA	NA
UHGV-0103218_7	PHROG	phrog_87	metallo-protease	other
UHGV-0103218_7	UniRef90	UniRef90_A0A1U7M6N8	Peptidase_M78 domain-containing protein	NA
UHGV-0103218_7	eggNOG-mapper	1347392.CCEZ01000005_gene1204	Zn peptidase	NA
UHGV-0103218_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0103218_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0103218_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0103218_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0103218_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103218_8	UniRef90	UniRef90_A0A1Q6SLN5	XRE family transcriptional regulator	NA
UHGV-0103218_8	eggNOG-mapper	553973.CLOHYLEM_07297	Transcriptional	NA
UHGV-0103218_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0103218_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103218_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0103218_8	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0103218_9	UniRef90	UniRef90_A0A1Q6SM01	Transcriptional regulator	NA
UHGV-0103218_9	eggNOG-mapper	279010.BL00668	Helix-turn-helix XRE-family like proteins	NA
UHGV-0103218_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103218_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0103218_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0103218_11	PHROG	phrog_9607	NA	unknown function
UHGV-0103218_11	eggNOG-mapper	1304866.K413DRAFT_4791	NA	NA
UHGV-0103218_12	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-0103218_13	PHROG	phrog_13590	kinase	other
UHGV-0103218_13	eggNOG-mapper	207559.Dde_3428	NA	NA
UHGV-0103218_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0103218_16	eggNOG-mapper	1235793.C809_01901	NA	NA
UHGV-0103218_16	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0103218_17	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0103218_17	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0103218_17	UniRef90	UniRef90_C4Z812	Ribonuclease H	NA
UHGV-0103218_17	eggNOG-mapper	635013.TherJR_1738	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0103218_17	Pfam	PF00075	RNase H	RNase_H
UHGV-0103218_17	COG	COG0328	Ribonuclease HI	NA
UHGV-0103218_17	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0103218_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0103218_18	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0103218_18	UniRef90	UniRef90_A0A174GZH1	Probable chromosome-partitioning protein parB	NA
UHGV-0103218_18	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0103218_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0103218_18	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0103218_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0103218_18	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0103218_19	Structural annotation	PF18066, NF007780, COG1544	NA	NA
UHGV-0103218_20	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0103218_20	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0103218_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0103218_22	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0103218_22	Structural annotation	PF02996	NA	NA
UHGV-0103218_25	PHROG	phrog_8684	NA	unknown function
UHGV-0103218_25	UniRef90	UniRef90_A0A417PEY2	YopX domain-containing protein	NA
UHGV-0103218_25	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0103218_25	Pfam	PF09643	YopX protein	YopX
UHGV-0103218_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0103218_26	PHROG	phrog_874	NA	unknown function
UHGV-0103218_26	UniRef90	UniRef90_C4IFC5	Upf86.8	NA
UHGV-0103218_26	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0103218_26	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0103218_31	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0103218_31	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0103218_31	UniRef90	UniRef90_A0A3R6LJR5	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0103218_31	eggNOG-mapper	592026.GCWU0000282_000315	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0103218_31	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0103218_31	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0103218_32	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0103218_32	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0103218_32	UniRef90	UniRef90_A0A3R6L2U9	HicB family protein	NA
UHGV-0103218_32	eggNOG-mapper	411460.RUMTOR_02082	NA	NA
UHGV-0103218_32	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0103218_32	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0103218_32	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0103218_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0103218_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0103218_33	UniRef90	UniRef90_A0A396P294	Terminase small subunit	NA
UHGV-0103218_33	eggNOG-mapper	1321778.HMPREF1982_02686	Terminase Small Subunit	NA
UHGV-0103218_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0103218_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0103218_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0103218_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103218_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0103218_34	UniRef90	UniRef90_A0A2U2EKP2	Terminase	NA
UHGV-0103218_34	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0103218_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0103218_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0103218_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103218_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0103218_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0103218_35	UniRef90	UniRef90_A0A2U2EKQ8	Portal protein	NA
UHGV-0103218_35	eggNOG-mapper	1235792.C808_05332	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0103218_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0103218_35	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0103218_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0103218_36	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0103218_36	UniRef90	UniRef90_A0A2U2EKP8	Phage_Mu_F domain-containing protein	NA
UHGV-0103218_36	eggNOG-mapper	1235792.C808_05333	Phage Mu protein F like protein	NA
UHGV-0103218_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0103218_36	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0103218_36	COG	COG2369	NA	NA
UHGV-0103218_36	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0103218_37	UniRef90	UniRef90_A0A2U2EKU5	Thioredoxin domain-containing protein	NA
UHGV-0103218_37	eggNOG-mapper	1216362.B437_04725	Thioredoxin	NA
UHGV-0103218_37	Pfam	PF00085	Thioredoxin	Thioredoxin
UHGV-0103218_37	COG	COG0526	Thiol-disulfide isomerase or thioredoxin	NA
UHGV-0103218_37	Structural annotation	PF00085, MF_01835, TIGR01068, COG0526	NA	NA
UHGV-0103218_38	KOfam	K07584	NA	NA
UHGV-0103218_38	PHROG	phrog_4478	peptidase	other
UHGV-0103218_38	UniRef90	UniRef90_UPI001AA0FCA2	ribosomal-processing cysteine protease Prp	NA
UHGV-0103218_38	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-0103218_38	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0103218_38	COG	COG2868	NA	NA
UHGV-0103218_38	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0103218_39	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0103218_39	UniRef90	UniRef90_A0A396QD36	NA	NA
UHGV-0103218_39	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-0103218_39	Pfam	PF14265	NA	DUF4355
UHGV-0103218_39	Structural annotation	PF14265	NA	NA
UHGV-0103218_40	PHROG	phrog_544	major head protein	head and packaging
UHGV-0103218_40	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-0103218_40	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0103218_41	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0103218_41	UniRef90	UniRef90_UPI001CF82054	phage head-tail connector protein	NA
UHGV-0103218_41	eggNOG-mapper	1235792.C808_05341	NA	NA
UHGV-0103218_41	Structural annotation	PF05135	NA	NA
UHGV-0103218_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0103218_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0103218_43	UniRef90	UniRef90_UPI00189A8F38	HK97 gp10 family phage protein	NA
UHGV-0103218_43	eggNOG-mapper	742722.HMPREF9463_00249	NA	NA
UHGV-0103218_43	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0103218_44	PHROG	phrog_176	tail terminator	connector
UHGV-0103218_44	UniRef90	UniRef90_UPI0018A9DA46	NA	NA
UHGV-0103218_44	eggNOG-mapper	1235792.C808_05344	NA	NA
UHGV-0103218_44	Pfam	PF16807	NA	DUF5072
UHGV-0103218_44	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0103218_45	PHROG	phrog_1407	major tail protein	tail
UHGV-0103218_45	UniRef90	UniRef90_A0A2U2EKQ1	Antigen A	NA
UHGV-0103218_45	eggNOG-mapper	1235792.C808_05345	Phage tail tube protein	NA
UHGV-0103218_45	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0103218_45	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0103218_45	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0103218_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0103218_46	UniRef90	UniRef90_R5KJ84	BH3520 protein	NA
UHGV-0103218_46	eggNOG-mapper	1347392.CCEZ01000005_gene1242	NA	NA
UHGV-0103218_47	PHROG	phrog_7423	NA	unknown function
UHGV-0103218_47	UniRef90	UniRef90_UPI0008A1BA71	phenylalanine racemase	NA
UHGV-0103218_47	eggNOG-mapper	1347392.CCEZ01000005_gene1243	NA	NA
UHGV-0103218_48	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0103218_48	eggNOG-mapper	479437.Elen_2636	Phage tail tape measure protein TP901	NA
UHGV-0103218_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0103218_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0103218_48	COG	COG5283	Phage-related tail protein	NA
UHGV-0103218_48	Structural annotation	TIGR01760	NA	NA
UHGV-0103218_49	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0103218_50	PHROG	phrog_23052	NA	unknown function
UHGV-0103218_50	eggNOG-mapper	243164.DET1076	NA	NA
UHGV-0103218_50	Structural annotation	PF14879, PF09931, NF033848, NF033147, COG3500	NA	NA
UHGV-0103218_51	PHROG	phrog_19291	NA	unknown function
UHGV-0103218_51	eggNOG-mapper	879305.HMPREF9290_0127	NA	NA
UHGV-0103218_51	Structural annotation	PF02191, COG3823	NA	NA