UHGV-0103313

Genome information

Genome length 45,192 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103313
vOTU ID	vOTU-075280
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_217299
BioSample	SAMEA3541571
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.57
Jumbo phage	No

Genome content
Genome length	45,192 bps
GC content	36.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.58%
Average CDS length	685.65 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103313_1	eggNOG-mapper	657322.FPR_11180	NA	NA
UHGV-0103313_2	eggNOG-mapper	657322.FPR_11170	NA	NA
UHGV-0103313_3	eggNOG-mapper	97139.C824_05939	NA	NA
UHGV-0103313_4	PHROG	phrog_87	metallo-protease	other
UHGV-0103313_4	UniRef90	UniRef90_A0A173RF40	Metallopeptidase immA	NA
UHGV-0103313_4	eggNOG-mapper	742740.HMPREF9474_03480	NA	NA
UHGV-0103313_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0103313_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0103313_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0103313_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103313_5	UniRef90	UniRef90_B0P3B2	DNA-binding helix-turn-helix protein	NA
UHGV-0103313_5	eggNOG-mapper	33035.JPJF01000091_gene90	addiction module antidote protein HigA	NA
UHGV-0103313_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103313_5	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0103313_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0103313_6	UniRef90	UniRef90_A0A173UNH7	HTH_8 domain-containing protein	NA
UHGV-0103313_6	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0103313_6	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0103313_8	Structural annotation	PF09827, MF_01471, COG1343	NA	NA
UHGV-0103313_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0103313_11	UniRef90	UniRef90_A0A173REG5	Putative phage-type endonuclease	NA
UHGV-0103313_11	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0103313_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0103313_11	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0103313_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0103313_11	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0103313_12	PHROG	phrog_674	NA	unknown function
UHGV-0103313_12	UniRef90	UniRef90_A0A415G8D2	NA	NA
UHGV-0103313_12	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0103313_12	Pfam	PF07083	NA	DUF1351
UHGV-0103313_12	Structural annotation	PF07083	NA	NA
UHGV-0103313_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0103313_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0103313_13	UniRef90	UniRef90_A0A173RED8	p33	NA
UHGV-0103313_13	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0103313_13	Pfam	PF03837	RecT family	RecT
UHGV-0103313_13	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0103313_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0103313_13	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0103313_14	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0103313_14	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0103313_15	PHROG	phrog_1029	NA	unknown function
UHGV-0103313_15	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0103313_15	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0103313_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0103313_16	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0103313_16	UniRef90	UniRef90_D4MWK7	Holliday junction resolvase	NA
UHGV-0103313_16	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0103313_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0103313_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0103313_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0103313_17	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0103313_17	UniRef90	UniRef90_A0A173REQ2	NA	NA
UHGV-0103313_17	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0103313_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0103313_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0103313_17	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0103313_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0103313_18	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0103313_18	UniRef90	UniRef90_UPI00156EF6FB	phage antirepressor KilAC domain-containing protein	NA
UHGV-0103313_18	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0103313_18	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0103313_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0103313_18	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0103313_18	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0103313_19	PHROG	phrog_17690	NA	unknown function
UHGV-0103313_19	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0103313_19	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0103313_22	PHROG	phrog_31560	NA	unknown function
UHGV-0103313_22	eggNOG-mapper	585501.HMPREF6123_0413	NA	NA
UHGV-0103313_24	PHROG	phrog_31515	NA	unknown function
UHGV-0103313_24	Structural annotation	PF07338, NF033776	NA	NA
UHGV-0103313_26	PHROG	phrog_21101	NA	unknown function
UHGV-0103313_26	UniRef90	UniRef90_D4MWL6	NA	NA
UHGV-0103313_26	eggNOG-mapper	592028.GCWU000321_00789	NA	NA
UHGV-0103313_26	Pfam	PF07866	NA	DUF1653
UHGV-0103313_26	COG	COG4728	NA	NA
UHGV-0103313_26	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0103313_27	UniRef90	UniRef90_L1Q0F3	DNA-binding helix-turn-helix protein	NA
UHGV-0103313_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0103313_28	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0103313_28	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0103313_28	Structural annotation	PF02996	NA	NA
UHGV-0103313_29	PHROG	phrog_1048	NA	unknown function
UHGV-0103313_29	UniRef90	UniRef90_A0A374AMV7	NA	NA
UHGV-0103313_29	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0103313_29	Pfam	PF11195	NA	DUF2829
UHGV-0103313_29	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0103313_29	Structural annotation	PF11195	NA	NA
UHGV-0103313_30	PHROG	phrog_918	NA	unknown function
UHGV-0103313_30	UniRef90	UniRef90_UPI00189D39C2	NA	NA
UHGV-0103313_30	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0103313_30	Pfam	PF19791	NA	DUF6275
UHGV-0103313_30	Structural annotation	PF19791	NA	NA
UHGV-0103313_31	eggNOG-mapper	665956.HMPREF1032_00651	NA	NA
UHGV-0103313_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0103313_32	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0103313_32	UniRef90	UniRef90_A0A1Q2CAR6	Phage portal protein	NA
UHGV-0103313_32	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0103313_32	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0103313_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0103313_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0103313_32	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0103313_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103313_33	PHROG	phrog_10250	NA	unknown function
UHGV-0103313_33	UniRef90	UniRef90_A0A1Q2C436	Terminase	NA
UHGV-0103313_33	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0103313_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0103313_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0103313_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103313_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0103313_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0103313_34	UniRef90	UniRef90_A0A1Q2C496	Phage capsid protein	NA
UHGV-0103313_34	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0103313_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0103313_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0103313_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0103313_35	UniRef90	UniRef90_A0A6N2R2Y7	Phage minor capsid protein 2	NA
UHGV-0103313_35	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0103313_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103313_35	COG	COG2369	NA	NA
UHGV-0103313_35	Structural annotation	PF06152	NA	NA
UHGV-0103313_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0103313_37	UniRef90	UniRef90_B0MB52	Phage minor structural protein GP20	NA
UHGV-0103313_37	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0103313_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0103313_37	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0103313_38	PHROG	phrog_247	major head protein	head and packaging
UHGV-0103313_38	UniRef90	UniRef90_A0A417UT84	Phage coat protein	NA
UHGV-0103313_38	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0103313_38	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0103313_38	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0103313_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0103313_39	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0103313_40	PHROG	phrog_3366	NA	unknown function
UHGV-0103313_40	eggNOG-mapper	1235799.C818_04225	NA	NA
UHGV-0103313_40	Pfam	PF20536	NA	DUF6751
UHGV-0103313_40	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0103313_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0103313_41	UniRef90	UniRef90_UPI001C012488	minor capsid protein	NA
UHGV-0103313_41	eggNOG-mapper	411490.ANACAC_00774	Minor capsid protein	NA
UHGV-0103313_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0103313_41	Structural annotation	PF11114	NA	NA
UHGV-0103313_42	PHROG	phrog_3266	tail completion	connector
UHGV-0103313_42	UniRef90	UniRef90_A0A417QFW9	Chloramphenicol resistance protein	NA
UHGV-0103313_42	eggNOG-mapper	1235799.C818_04227	NA	NA
UHGV-0103313_42	Structural annotation	PF12691	NA	NA
UHGV-0103313_43	PHROG	phrog_3099	NA	unknown function
UHGV-0103313_43	UniRef90	UniRef90_T3DT99	S-l_SbsC_C domain-containing protein	NA
UHGV-0103313_43	eggNOG-mapper	1151292.QEW_4530	NA	NA
UHGV-0103313_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0103313_44	PHROG	phrog_4450	NA	unknown function
UHGV-0103313_44	eggNOG-mapper	1235799.C818_04229	NA	NA
UHGV-0103313_44	Pfam	PF20378	NA	DUF6673
UHGV-0103313_44	Structural annotation	PF20378	NA	NA
UHGV-0103313_45	PHROG	phrog_706	NA	unknown function
UHGV-0103313_45	UniRef90	UniRef90_A0A6N2R3Z6	Bacteriophage Gp15 protein	NA
UHGV-0103313_45	eggNOG-mapper	1235799.C818_04230	Bacteriophage Gp15 protein	NA
UHGV-0103313_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0103313_45	Structural annotation	PF06854	NA	NA
UHGV-0103313_46	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0103313_46	PHROG	phrog_19074	NA	unknown function
UHGV-0103313_46	UniRef90	UniRef90_A0A1Q6KF40	Phage tail tape measure protein	NA
UHGV-0103313_46	eggNOG-mapper	1235799.C818_04231	Phage tail tape measure protein, TP901 family	NA
UHGV-0103313_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0103313_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0103313_46	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0103313_46	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0103313_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0103313_47	UniRef90	UniRef90_A0A417USV5	MtfA protein	NA
UHGV-0103313_47	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0103313_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0103313_47	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0103313_48	PHROG	phrog_3558	tail protein	tail
UHGV-0103313_48	UniRef90	UniRef90_UPI001C011630	phage tail protein	NA
UHGV-0103313_48	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0103313_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0103313_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0103313_48	COG	COG4926	Phage-related protein	NA
UHGV-0103313_48	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0103313_49	PHROG	phrog_11699	minor tail protein	tail
UHGV-0103313_51	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0103313_51	PHROG	phrog_6544	NA	unknown function
UHGV-0103313_51	UniRef90	UniRef90_UPI001D07B208	HNH endonuclease	NA
UHGV-0103313_51	eggNOG-mapper	243277.VC_A0307	HNH nucleases	NA
UHGV-0103313_51	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0103313_51	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0103313_52	Structural annotation	PF17224, COG3354	NA	NA
UHGV-0103313_54	PHROG	phrog_937	hemolysin	other
UHGV-0103313_54	eggNOG-mapper	1235792.C808_00576	NA	NA
UHGV-0103313_55	PHROG	phrog_15303	NA	unknown function
UHGV-0103313_55	eggNOG-mapper	1291050.JAGE01000001_gene794	NA	NA
UHGV-0103313_56	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0103313_56	PHROG	phrog_435	endolysin	lysis
UHGV-0103313_56	UniRef90	UniRef90_D4MWM5	Bacterial SH3 domain./N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0103313_56	eggNOG-mapper	1408823.AXUS01000041_gene3068	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0103313_56	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0103313_56	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0103313_56	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0103313_56	Structural annotation	PF01520, PF08239, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0103313_58	KOfam	K14059	int; integrase	NA
UHGV-0103313_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0103313_58	UniRef90	UniRef90_A0A173RTF4	Site-specific recombinase XerD	NA
UHGV-0103313_58	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0103313_58	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0103313_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103313_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0103313_58	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0103313_59	UniRef90	UniRef90_A0A173RTG3	Bacterial Ig-like domain (Group 2)	NA
UHGV-0103313_59	eggNOG-mapper	1449050.JNLE01000003_gene3872	Bacterial Ig-like domain (group 2)	NA
UHGV-0103313_59	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0103313_59	Structural annotation	PF02368, NF005261, COG3121	NA	NA
UHGV-0103313_60	UniRef90	UniRef90_A0A417V8U5	BIG2 domain-containing protein	NA
UHGV-0103313_60	eggNOG-mapper	397290.C810_01424	NA	NA