UHGV-0103341

Genome information

Genome length 41,357 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103341
vOTU ID	vOTU-045476
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_212303
BioSample	SAMEA3449255
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.23
Jumbo phage	No

Genome content
Genome length	41,357 bps
GC content	53.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	92.41%
Average CDS length	543.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103341_1	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-0103341_1	UniRef90	UniRef90_A0A345KQM6	DNA cytosine methyltransferase	NA
UHGV-0103341_1	eggNOG-mapper	1589750.A0A0C5AEL6_9CAUD	NA	NA
UHGV-0103341_1	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0103341_2	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0103341_2	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0103341_2	UniRef90	UniRef90_A0A1C5WFL3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0103341_2	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0103341_2	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0103341_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0103341_2	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0103341_4	PHROG	phrog_16304	NA	unknown function
UHGV-0103341_4	UniRef90	UniRef90_A0A3D3Y5P0	NA	NA
UHGV-0103341_4	eggNOG-mapper	1410650.JHWL01000003_gene2848	NA	NA
UHGV-0103341_4	Pfam	PF19808	NA	DUF6291
UHGV-0103341_4	Structural annotation	PF19808	NA	NA
UHGV-0103341_5	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0103341_5	UniRef90	UniRef90_UPI001E43F9BA	NA	NA
UHGV-0103341_5	eggNOG-mapper	1423732.BALS01000134_gene393	NA	NA
UHGV-0103341_5	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0103341_6	UniRef90	UniRef90_A0A2Z4QA33	PD-(D/E)XK nuclease	NA
UHGV-0103341_6	eggNOG-mapper	718252.FP2_01050	NA	NA
UHGV-0103341_6	Structural annotation	PF10926, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0103341_7	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0103341_7	UniRef90	UniRef90_A0A2Z4QBI4	AAA domain protein	NA
UHGV-0103341_7	eggNOG-mapper	445972.ANACOL_00146	AAA domain	NA
UHGV-0103341_7	Pfam	PF13479	AAA domain	AAA_24
UHGV-0103341_7	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0103341_7	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0103341_11	Structural annotation	PF10548	NA	NA
UHGV-0103341_12	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0103341_12	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0103341_13	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0103341_13	Structural annotation	PF09035, NF040990	NA	NA
UHGV-0103341_14	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-0103341_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103341_14	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0103341_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103341_15	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0103341_15	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0103341_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103341_15	Structural annotation	PF12844, NF007257, COG3655	NA	NA
UHGV-0103341_17	eggNOG-mapper	1280682.AUKA01000018_gene2337	NA	NA
UHGV-0103341_17	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0103341_17	Structural annotation	PF02805	NA	NA
UHGV-0103341_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103341_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0103341_19	Structural annotation	PF12844	NA	NA
UHGV-0103341_20	KOfam	K14059	int; integrase	NA
UHGV-0103341_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0103341_20	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0103341_20	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0103341_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103341_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0103341_20	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0103341_21	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0103341_22	Structural annotation	PF12510	NA	NA
UHGV-0103341_23	PHROG	phrog_20016	NA	unknown function
UHGV-0103341_23	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0103341_23	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0103341_23	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0103341_25	PHROG	phrog_16490	NA	unknown function
UHGV-0103341_25	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0103341_26	PHROG	phrog_22984	NA	unknown function
UHGV-0103341_27	PHROG	phrog_21718	NA	unknown function
UHGV-0103341_27	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0103341_28	PHROG	phrog_3754	NA	unknown function
UHGV-0103341_28	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0103341_29	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0103341_30	PHROG	phrog_14030	NA	unknown function
UHGV-0103341_30	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0103341_30	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0103341_30	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0103341_31	PHROG	phrog_6918	holin	lysis
UHGV-0103341_31	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0103341_31	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0103341_31	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0103341_31	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0103341_34	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0103341_34	Structural annotation	PF07484	NA	NA
UHGV-0103341_35	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0103341_35	Structural annotation	PF20055, MF_03008, NF010730, COG3940	NA	NA
UHGV-0103341_36	PHROG	phrog_18725	NA	unknown function
UHGV-0103341_36	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0103341_37	PHROG	phrog_13879	NA	unknown function
UHGV-0103341_37	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0103341_37	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0103341_38	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0103341_39	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0103341_39	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0103341_39	COG	COG5412	Phage-related protein	NA
UHGV-0103341_39	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0103341_41	PHROG	phrog_18646	NA	unknown function
UHGV-0103341_42	PHROG	phrog_885	major tail protein	tail
UHGV-0103341_42	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0103341_42	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0103341_42	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0103341_43	Structural annotation	PF11367	NA	NA
UHGV-0103341_44	PHROG	phrog_17977	NA	unknown function
UHGV-0103341_44	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0103341_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0103341_46	PHROG	phrog_544	major head protein	head and packaging
UHGV-0103341_46	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0103341_46	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0103341_46	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0103341_46	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0103341_47	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0103341_47	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0103341_47	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0103341_47	Structural annotation	PF06810	NA	NA
UHGV-0103341_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0103341_48	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0103341_48	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0103341_48	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0103341_48	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0103341_48	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0103341_50	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0103341_50	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0103341_50	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0103341_50	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0103341_50	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0103341_50	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0103341_50	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0103341_50	COG	COG2369	NA	NA
UHGV-0103341_50	Structural annotation	PF03496, PF04233, MF_04142, NF040688, TIGR01641, COG2369	NA	NA
UHGV-0103341_51	UniRef90	UniRef90_A0A521IRB0	Chitin-binding type-3 domain-containing protein	NA
UHGV-0103341_51	Structural annotation	PF14600	NA	NA
UHGV-0103341_53	PHROG	phrog_29409	NA	unknown function
UHGV-0103341_54	PHROG	phrog_37900	NA	unknown function
UHGV-0103341_54	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-0103341_54	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0103341_54	Pfam	PF19789	NA	DUF6273
UHGV-0103341_54	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0103341_54	Structural annotation	PF19789	NA	NA
UHGV-0103341_55	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0103341_55	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0103341_57	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0103341_58	PHROG	phrog_64	portal protein	head and packaging
UHGV-0103341_58	UniRef90	UniRef90_UPI001AA0B7FF	phage portal protein	NA
UHGV-0103341_58	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0103341_58	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0103341_58	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0103341_59	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103341_59	PHROG	phrog_10250	NA	unknown function
UHGV-0103341_59	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-0103341_59	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0103341_59	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0103341_59	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0103341_59	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0103341_59	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103341_59	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0103341_60	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0103341_60	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0103341_60	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0103341_60	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0103341_60	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0103341_60	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0103341_60	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0103341_61	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0103341_62	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0103341_62	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0103341_66	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0103341_66	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0103341_67	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0103341_67	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0103341_67	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0103341_67	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0103341_69	PHROG	phrog_38832	NA	unknown function
UHGV-0103341_69	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0103341_70	PHROG	phrog_3136	NA	unknown function
UHGV-0103341_70	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0103341_70	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0103341_70	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0103341_70	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0103341_71	Pfam	PF04448	NA	DUF551
UHGV-0103341_71	Structural annotation	NF041588	NA	NA