UHGV-0103373

Genome information

Genome length 22,179 bps

CDS count 32

Completeness 59.05% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103373
vOTU ID	vOTU-042309
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_221876
BioSample	SAMEA3541562
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.69
Jumbo phage	No

Genome content
Genome length	22,179 bps
GC content	43.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.47%
Average CDS length	646.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103373_1	eggNOG-mapper	572479.Hprae_2026	NA	NA
UHGV-0103373_1	Pfam	PF20712	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
UHGV-0103373_2	eggNOG-mapper	1232453.BAIF02000057_gene1147	NA	NA
UHGV-0103373_3	PHROG	phrog_25456	NA	unknown function
UHGV-0103373_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0103373_5	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0103373_5	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0103373_5	Structural annotation	MF_00307	NA	NA
UHGV-0103373_6	eggNOG-mapper	1304866.K413DRAFT_4838	NA	NA
UHGV-0103373_7	PHROG	phrog_2412	NA	unknown function
UHGV-0103373_7	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0103373_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103373_8	PHROG	phrog_10250	NA	unknown function
UHGV-0103373_8	UniRef90	UniRef90_A0A3R6AA11	PBSX family phage terminase large subunit	NA
UHGV-0103373_8	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0103373_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0103373_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103373_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0103373_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-0103373_9	UniRef90	UniRef90_A0A173TXV5	Phage portal protein, putative, A118 family	NA
UHGV-0103373_9	eggNOG-mapper	411462.DORLON_00795	COG NOG25118 non supervised orthologous group	NA
UHGV-0103373_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0103373_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0103373_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0103373_10	UniRef90	UniRef90_A0A414QM98	Minor capsid protein	NA
UHGV-0103373_10	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-0103373_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103373_10	COG	COG2369	NA	NA
UHGV-0103373_10	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0103373_11	eggNOG-mapper	411461.DORFOR_00747	NA	NA
UHGV-0103373_12	PHROG	phrog_12728	NA	unknown function
UHGV-0103373_12	UniRef90	UniRef90_A0A6H0X686	Putative signal peptide-containing lipoprotein	NA
UHGV-0103373_12	eggNOG-mapper	742765.HMPREF9457_02125	NA	NA
UHGV-0103373_13	KOfam	K07584	NA	NA
UHGV-0103373_13	PHROG	phrog_4478	peptidase	other
UHGV-0103373_13	UniRef90	UniRef90_A0A173TUJ7	Predicted ribosomal protein	NA
UHGV-0103373_13	eggNOG-mapper	471875.RUMLAC_01542	Cysteine protease Prp	NA
UHGV-0103373_13	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0103373_13	COG	COG2868	NA	NA
UHGV-0103373_13	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0103373_14	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0103373_14	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0103373_14	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0103373_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0103373_15	UniRef90	UniRef90_A0A173TT07	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0103373_15	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0103373_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0103373_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0103373_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0103373_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0103373_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0103373_16	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0103373_17	PHROG	phrog_3366	NA	unknown function
UHGV-0103373_17	eggNOG-mapper	742765.HMPREF9457_02129	NA	NA
UHGV-0103373_17	Pfam	PF20536	NA	DUF6751
UHGV-0103373_17	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0103373_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0103373_18	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0103373_18	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-0103373_18	Structural annotation	PF11114	NA	NA
UHGV-0103373_19	PHROG	phrog_3266	tail completion	connector
UHGV-0103373_19	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-0103373_19	Structural annotation	PF12691	NA	NA
UHGV-0103373_20	PHROG	phrog_3099	NA	unknown function
UHGV-0103373_20	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-0103373_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0103373_21	PHROG	phrog_4450	NA	unknown function
UHGV-0103373_21	eggNOG-mapper	411461.DORFOR_00738	NA	NA
UHGV-0103373_21	Pfam	PF20378	NA	DUF6673
UHGV-0103373_21	Structural annotation	PF20378	NA	NA
UHGV-0103373_22	PHROG	phrog_706	NA	unknown function
UHGV-0103373_22	UniRef90	UniRef90_A0A173TSE6	Bacteriophage Gp15 protein	NA
UHGV-0103373_22	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-0103373_22	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0103373_22	Structural annotation	PF06854	NA	NA
UHGV-0103373_23	PHROG	phrog_5602	NA	unknown function
UHGV-0103373_23	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0103373_23	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0103373_24	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0103373_24	UniRef90	UniRef90_A0A173TTL9	Phage-related protein	NA
UHGV-0103373_24	eggNOG-mapper	411461.DORFOR_00735	nuclear chromosome segregation	NA
UHGV-0103373_24	COG	COG1511	NA	NA
UHGV-0103373_24	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0103373_25	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-0103373_25	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0103373_26	PHROG	phrog_538	minor tail protein	tail
UHGV-0103373_26	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0103373_26	eggNOG-mapper	411460.RUMTOR_02096	NA	NA
UHGV-0103373_26	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0103373_26	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0103373_27	PHROG	phrog_9994	NA	unknown function
UHGV-0103373_27	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0103373_27	eggNOG-mapper	742765.HMPREF9457_03373	NA	NA
UHGV-0103373_27	Structural annotation	PF20747	NA	NA
UHGV-0103373_29	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0103373_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0103373_29	UniRef90	UniRef90_A0A174ILR0	Tyrosine recombinase XerD	NA
UHGV-0103373_29	eggNOG-mapper	411468.CLOSCI_02414	Belongs to the 'phage' integrase family	NA
UHGV-0103373_29	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0103373_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103373_29	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0103373_29	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0103373_31	PHROG	phrog_12931	NA	unknown function
UHGV-0103373_31	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-0103373_32	PHROG	phrog_1382	NA	unknown function
UHGV-0103373_32	eggNOG-mapper	411461.DORFOR_00727	NA	NA