UHGV-0103394

Genome information

Genome length 37,728 bps

CDS count 47

Completeness 81.73% (medium-quality)

geNomad score 0.9710

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103394
vOTU ID	vOTU-016141
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_223946
BioSample	SAMEA3541484
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9710
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.29
Jumbo phage	No

Genome content
Genome length	37,728 bps
GC content	39.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	90.55%
Average CDS length	730.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103394_1	KOfam	K14059	int; integrase	NA
UHGV-0103394_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0103394_1	UniRef90	UniRef90_UPI0006829D64	tyrosine-type recombinase/integrase	NA
UHGV-0103394_1	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0103394_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103394_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0103394_1	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0103394_2	PHROG	phrog_14275	NA	unknown function
UHGV-0103394_2	UniRef90	UniRef90_UPI0003F7C672	FxLYD domain-containing protein	NA
UHGV-0103394_2	eggNOG-mapper	1031288.AXAA01000044_gene1983	NA	NA
UHGV-0103394_2	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0103394_3	UniRef90	UniRef90_A0A3C0X3L4	UDP-N-acetylglucosamine kinase	NA
UHGV-0103394_3	eggNOG-mapper	877414.ATWA01000049_gene450	zeta toxin	NA
UHGV-0103394_3	Pfam	PF06414	Zeta toxin	Zeta_toxin
UHGV-0103394_3	COG	COG4185	Predicted ABC-type ATPase or kinase	NA
UHGV-0103394_3	Structural annotation	PF06414, MF_00234, NF041574, COG4185	NA	NA
UHGV-0103394_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0103394_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0103394_4	UniRef90	UniRef90_A0A348Z949	Repressor LexA	NA
UHGV-0103394_4	eggNOG-mapper	1118057.CAGX01000020_gene1659	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-0103394_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0103394_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103394_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0103394_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0103394_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0103394_5	UniRef90	UniRef90_UPI00163A3CDC	helix-turn-helix domain-containing protein	NA
UHGV-0103394_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103394_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0103394_5	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0103394_7	PHROG	phrog_9607	NA	unknown function
UHGV-0103394_7	eggNOG-mapper	1304866.K413DRAFT_4791	NA	NA
UHGV-0103394_7	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0103394_9	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0103394_9	UniRef90	UniRef90_UPI000E51D163	NA	NA
UHGV-0103394_9	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-0103394_9	Pfam	PF13643	NA	DUF4145
UHGV-0103394_9	Structural annotation	PF13643	NA	NA
UHGV-0103394_10	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0103394_10	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0103394_10	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0103394_10	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0103394_13	PHROG	phrog_18562	NA	unknown function
UHGV-0103394_13	eggNOG-mapper	679201.HMPREF9334_00305	NA	NA
UHGV-0103394_14	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0103394_14	UniRef90	UniRef90_A0A3G2R530	NA	NA
UHGV-0103394_14	eggNOG-mapper	1449126.JQKL01000006_gene838	NA	NA
UHGV-0103394_14	Pfam	PF10926	NA	DUF2800
UHGV-0103394_14	COG	COG2887	RecB family exonuclease	NA
UHGV-0103394_14	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0103394_15	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0103394_15	UniRef90	UniRef90_A0A3G2R4B8	NA	NA
UHGV-0103394_15	eggNOG-mapper	1449126.JQKL01000006_gene839	NA	NA
UHGV-0103394_15	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0103394_15	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0103394_16	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0103394_16	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0103394_16	UniRef90	UniRef90_A0A6N7WBG6	POLAc domain-containing protein	NA
UHGV-0103394_16	eggNOG-mapper	1120971.AUCA01000043_gene1177	DNA polymerase A domain	NA
UHGV-0103394_16	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0103394_16	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0103394_16	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0103394_17	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0103394_17	UniRef90	UniRef90_A0A1C7GCH9	Virulence-associated protein E	NA
UHGV-0103394_17	eggNOG-mapper	1449126.JQKL01000051_gene3184	Virulence-associated protein E	NA
UHGV-0103394_17	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0103394_17	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0103394_17	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0103394_18	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0103394_18	UniRef90	UniRef90_I0R812	VRR-NUC domain protein	NA
UHGV-0103394_18	eggNOG-mapper	1095750.HMPREF9970_1023	VRR-NUC domain protein	NA
UHGV-0103394_18	Structural annotation	PF08774, NF002582	NA	NA
UHGV-0103394_19	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0103394_19	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0103394_19	UniRef90	UniRef90_A0A2T6EKJ9	DEAD/DEAH box helicase	NA
UHGV-0103394_19	eggNOG-mapper	526218.Sterm_1415	SNF2 family N-terminal domain	NA
UHGV-0103394_19	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0103394_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0103394_19	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0103394_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0103394_19	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0103394_20	PHROG	phrog_6802	NA	unknown function
UHGV-0103394_20	UniRef90	UniRef90_D4P7T2	Gp064	NA
UHGV-0103394_20	eggNOG-mapper	511680.BUTYVIB_00663	NA	NA
UHGV-0103394_21	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0103394_21	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0103394_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103394_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0103394_22	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0103394_22	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0103394_22	UniRef90	UniRef90_A0A1M6YXS5	dCTP deaminase, dUMP-forming	NA
UHGV-0103394_22	eggNOG-mapper	596329.HMPREF0631_0668	Belongs to the dCTP deaminase family	NA
UHGV-0103394_22	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0103394_22	COG	COG0717	dCTP deaminase	NA
UHGV-0103394_22	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0103394_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0103394_23	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0103394_23	eggNOG-mapper	445972.ANACOL_00233	NA	NA
UHGV-0103394_23	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0103394_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0103394_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0103394_24	UniRef90	UniRef90_A0A7Y0EES9	Terminase small subunit	NA
UHGV-0103394_24	eggNOG-mapper	1415774.U728_2926	Terminase Small Subunit	NA
UHGV-0103394_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0103394_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0103394_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103394_25	PHROG	phrog_10250	NA	unknown function
UHGV-0103394_25	UniRef90	UniRef90_A0A6A8VHC1	PBSX family phage terminase large subunit	NA
UHGV-0103394_25	eggNOG-mapper	1384066.JAGT01000001_gene2140	Phage terminase, large subunit, PBSX family	NA
UHGV-0103394_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0103394_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0103394_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103394_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0103394_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0103394_26	UniRef90	UniRef90_UPI001D0FF9EC	phage portal protein	NA
UHGV-0103394_26	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0103394_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0103394_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0103394_27	UniRef90	UniRef90_J5UHE6	Phage minor capsid protein 2	NA
UHGV-0103394_27	eggNOG-mapper	545697.HMPREF0216_02846	Phage minor capsid protein 2	NA
UHGV-0103394_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103394_27	COG	COG2369	NA	NA
UHGV-0103394_27	Structural annotation	PF06152	NA	NA
UHGV-0103394_28	eggNOG-mapper	1121335.Clst_0388	NA	NA
UHGV-0103394_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0103394_29	UniRef90	UniRef90_UPI000A271E08	phage scaffolding protein	NA
UHGV-0103394_29	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0103394_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0103394_29	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0103394_30	PHROG	phrog_544	major head protein	head and packaging
UHGV-0103394_30	UniRef90	UniRef90_A0A5B6P485	N4-gp56 family major capsid protein	NA
UHGV-0103394_30	eggNOG-mapper	1211814.CAPG01000027_gene1311	NA	NA
UHGV-0103394_30	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0103394_30	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0103394_31	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0103394_31	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0103394_32	PHROG	phrog_3366	NA	unknown function
UHGV-0103394_32	Pfam	PF20536	NA	DUF6751
UHGV-0103394_32	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0103394_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0103394_33	UniRef90	UniRef90_UPI0005439C25	minor capsid protein	NA
UHGV-0103394_33	eggNOG-mapper	1151292.QEW_4532	Minor capsid protein	NA
UHGV-0103394_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0103394_33	Structural annotation	PF11114	NA	NA
UHGV-0103394_34	PHROG	phrog_3266	tail completion	connector
UHGV-0103394_34	UniRef90	UniRef90_UPI001178914F	chloramphenicol resistance protein	NA
UHGV-0103394_34	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0103394_34	Structural annotation	PF12691	NA	NA
UHGV-0103394_35	PHROG	phrog_3099	NA	unknown function
UHGV-0103394_35	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0103394_35	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0103394_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0103394_36	PHROG	phrog_4450	NA	unknown function
UHGV-0103394_36	UniRef90	UniRef90_UPI0018986D97	AP endonuclease	NA
UHGV-0103394_36	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0103394_36	Pfam	PF20378	NA	DUF6673
UHGV-0103394_36	Structural annotation	PF20378	NA	NA
UHGV-0103394_37	PHROG	phrog_706	NA	unknown function
UHGV-0103394_37	UniRef90	UniRef90_UPI0006C2D934	bacteriophage Gp15 family protein	NA
UHGV-0103394_37	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0103394_37	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0103394_37	Structural annotation	PF06854	NA	NA
UHGV-0103394_38	eggNOG-mapper	1003195.SCAT_0609	NA	NA
UHGV-0103394_40	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0103394_40	UniRef90	UniRef90_UPI000688A384	Bro-N domain-containing protein	NA
UHGV-0103394_40	eggNOG-mapper	86416.Clopa_0553	Prophage antirepressor	NA
UHGV-0103394_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0103394_40	COG	COG3617	Prophage antirepressor	NA
UHGV-0103394_41	PHROG	phrog_19074	NA	unknown function
UHGV-0103394_41	UniRef90	UniRef90_C2CFW6	PhageMin_Tail domain-containing protein	NA
UHGV-0103394_41	eggNOG-mapper	632245.CLP_1658	Phage tail tape measure protein, TP901 family	NA
UHGV-0103394_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0103394_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0103394_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0103394_41	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0103394_42	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0103394_42	UniRef90	UniRef90_A0A8F1QRM2	NA	NA
UHGV-0103394_42	eggNOG-mapper	1209989.TepiRe1_2594	Restriction endonuclease	NA
UHGV-0103394_42	Pfam	PF14311	Probable Zinc-ribbon domain	DUF4379
UHGV-0103394_42	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-0103394_42	Structural annotation	PF18741, PF14311, MF_04160, NF007294, COG3727	NA	NA
UHGV-0103394_43	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0103394_43	UniRef90	UniRef90_UPI00156E32A0	phage tail tape measure protein	NA
UHGV-0103394_43	eggNOG-mapper	742723.HMPREF9477_00897	phage tail tape measure protein	NA
UHGV-0103394_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0103394_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0103394_43	COG	COG4487	NA	NA
UHGV-0103394_43	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0103394_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0103394_44	UniRef90	UniRef90_UPI00164AD3F2	phage tail family protein	NA
UHGV-0103394_44	eggNOG-mapper	1540257.JQMW01000013_gene730	Phage tail protein	NA
UHGV-0103394_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0103394_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0103394_44	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0103394_45	PHROG	phrog_538	minor tail protein	tail
UHGV-0103394_45	UniRef90	UniRef90_A0A8J6IQQ3	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0103394_45	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0103394_45	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0103394_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0103394_46	PHROG	phrog_1220	head protein	head and packaging
UHGV-0103394_46	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0103394_46	Structural annotation	PF20747	NA	NA