UHGV-0103413

Genome information

Genome length 27,469 bps

CDS count 36

Completeness 55.00% (medium-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103413
vOTU ID	vOTU-041838
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_227417
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.03
Jumbo phage	No

Genome content
Genome length	27,469 bps
GC content	32.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	90.54%
Average CDS length	693.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103413_1	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0103413_1	PHROG	phrog_14430	NA	unknown function
UHGV-0103413_1	UniRef90	UniRef90_UPI000B36DD08	AAA family ATPase	NA
UHGV-0103413_1	eggNOG-mapper	888055.HMPREF9015_00314	NA	NA
UHGV-0103413_1	PADLOC	PtuA1_00019	AAA ATPase domain	Septu
UHGV-0103413_1	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0103413_1	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-0103413_1	COG	COG3950	Predicted ATP-binding protein involved in virulence	NA
UHGV-0103413_1	Structural annotation	PF11398, MF_00365, NF041760, COG4938	NA	NA
UHGV-0103413_2	UniRef90	UniRef90_D7GQ90	Rab geranylgeranyl transferase alpha-subunit, insert domain	NA
UHGV-0103413_2	eggNOG-mapper	1284708.HMPREF1634_03630	NA	NA
UHGV-0103413_3	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0103413_3	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0103413_3	UniRef90	UniRef90_UPI0018A97EF7	N-6 DNA methylase	NA
UHGV-0103413_3	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-0103413_3	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0103413_3	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0103413_3	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-0103413_3	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0103413_3	Structural annotation	PF02384, PF01420, MF_01872, TIGR00497, COG0286, COG0732	NA	NA
UHGV-0103413_4	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0103413_4	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0103413_4	UniRef90	UniRef90_A0A7I8DYC5	Phage terminase small subunit	NA
UHGV-0103413_4	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0103413_4	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0103413_4	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0103413_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103413_4	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0103413_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103413_5	PHROG	phrog_10250	NA	unknown function
UHGV-0103413_5	UniRef90	UniRef90_A0A7I8E1I1	Terminase	NA
UHGV-0103413_5	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0103413_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0103413_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0103413_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103413_5	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0103413_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0103413_6	UniRef90	UniRef90_A0A7I8DYD1	Putative minor capsid protein, phage associated	NA
UHGV-0103413_6	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0103413_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0103413_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0103413_7	UniRef90	UniRef90_A0A417IJ82	Ntox50 domain-containing protein (Fragment)	NA
UHGV-0103413_7	eggNOG-mapper	1232449.BAHV02000010_gene2710	NA	NA
UHGV-0103413_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103413_7	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0103413_7	COG	COG2369	NA	NA
UHGV-0103413_7	Structural annotation	PF06152, PF15542	NA	NA
UHGV-0103413_8	PHROG	phrog_1865	NA	unknown function
UHGV-0103413_8	eggNOG-mapper	1582156.A0A0A8WJ56_9CAUD	NA	NA
UHGV-0103413_8	Structural annotation	PF07073, MF_01077, NF037951, COG4568	NA	NA
UHGV-0103413_10	PHROG	phrog_1048	NA	unknown function
UHGV-0103413_10	UniRef90	UniRef90_A0A417IJC2	NA	NA
UHGV-0103413_10	eggNOG-mapper	411462.DORLON_00765	NA	NA
UHGV-0103413_10	Pfam	PF11195	NA	DUF2829
UHGV-0103413_10	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0103413_10	Structural annotation	PF11195	NA	NA
UHGV-0103413_11	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0103413_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103413_11	UniRef90	UniRef90_A0A7I8DYD5	HTH cro/C1-type domain-containing protein	NA
UHGV-0103413_11	eggNOG-mapper	1504823.CCMM01000008_gene1055	sequence-specific DNA binding	NA
UHGV-0103413_11	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0103413_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103413_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0103413_11	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0103413_12	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-0103413_14	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0103413_14	UniRef90	UniRef90_UPI001EE1020E	ORF6C domain-containing protein	NA
UHGV-0103413_14	eggNOG-mapper	1232446.BAIE02000002_gene798	ORF6C domain	NA
UHGV-0103413_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0103413_14	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0103413_14	COG	COG3617	Prophage antirepressor	NA
UHGV-0103413_14	Structural annotation	PF02498, PF10552, TIGR02681, COG3617	NA	NA
UHGV-0103413_15	PHROG	phrog_30609	NA	unknown function
UHGV-0103413_15	Structural annotation	PF21485	NA	NA
UHGV-0103413_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0103413_16	UniRef90	UniRef90_UPI000E553868	phage scaffolding protein	NA
UHGV-0103413_16	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-0103413_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0103413_16	Structural annotation	PF06810	NA	NA
UHGV-0103413_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0103413_17	UniRef90	UniRef90_A0A7I8E542	Phage capsid protein	NA
UHGV-0103413_17	eggNOG-mapper	1411095.X5J9Z5_9CAUD	NA	NA
UHGV-0103413_17	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0103413_18	PHROG	phrog_1378	NA	unknown function
UHGV-0103413_18	UniRef90	UniRef90_T3D7L4	Putative phage domain protein	NA
UHGV-0103413_18	eggNOG-mapper	1582156.A0A0A8WFD0_9CAUD	NA	NA
UHGV-0103413_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0103413_19	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0103413_20	PHROG	phrog_3366	NA	unknown function
UHGV-0103413_20	Structural annotation	PF20536	NA	NA
UHGV-0103413_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0103413_21	UniRef90	UniRef90_UPI0018AC663A	minor capsid protein	NA
UHGV-0103413_21	eggNOG-mapper	1120746.CCNL01000014_gene2100	Minor capsid protein	NA
UHGV-0103413_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0103413_21	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0103413_22	Structural annotation	PF16807	NA	NA
UHGV-0103413_23	PHROG	phrog_3099	NA	unknown function
UHGV-0103413_23	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-0103413_24	Structural annotation	PF10666	NA	NA
UHGV-0103413_25	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0103413_25	UniRef90	UniRef90_A0A7I8E2C4	Phage tail tape measure protein	NA
UHGV-0103413_25	eggNOG-mapper	411468.CLOSCI_00194	Phage tail tape measure protein, TP901 family	NA
UHGV-0103413_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0103413_25	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0103413_25	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0103413_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0103413_26	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-0103413_26	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0103413_27	PHROG	phrog_538	minor tail protein	tail
UHGV-0103413_27	UniRef90	UniRef90_A0A1M6B1Q8	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0103413_27	eggNOG-mapper	411468.CLOSCI_00276	NA	NA
UHGV-0103413_27	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0103413_27	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0103413_28	PHROG	phrog_9994	NA	unknown function
UHGV-0103413_28	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-0103413_28	eggNOG-mapper	1232446.BAIE02000011_gene1583	NA	NA
UHGV-0103413_28	Structural annotation	PF20747	NA	NA
UHGV-0103413_30	PHROG	phrog_24103	NA	unknown function
UHGV-0103413_30	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-0103413_33	PHROG	phrog_443	holin	lysis
UHGV-0103413_33	UniRef90	UniRef90_UPI00197EA853	holin	NA
UHGV-0103413_33	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0103413_33	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0103413_33	Structural annotation	PF16945	NA	NA
UHGV-0103413_34	PHROG	phrog_4105	NA	unknown function
UHGV-0103413_34	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0103413_35	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0103413_35	PHROG	phrog_670	endolysin	lysis
UHGV-0103413_35	UniRef90	UniRef90_A0A7I8DY16	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0103413_35	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0103413_35	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0103413_35	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0103413_35	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0103413_35	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0103413_36	eggNOG-mapper	1504823.CCMM01000008_gene725	NA	NA
UHGV-0103413_36	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0103413_36	Structural annotation	PF09274, COG4710	NA	NA