UHGV-0103421

Genome information

Genome length 43,109 bps

CDS count 75

Completeness 89.82% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103421
vOTU ID	vOTU-023521
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_225822
BioSample	SAMEA3708654
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.77
Jumbo phage	No

Genome content
Genome length	43,109 bps
GC content	45.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	87.67%
Average CDS length	508.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103421_1	UniRef90	UniRef90_A0A2N0K4C7	Ribosomal_L12 domain-containing protein	NA
UHGV-0103421_1	eggNOG-mapper	742740.HMPREF9474_01531	zinc-ribbon domain	NA
UHGV-0103421_1	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0103421_1	Pfam	PF00542	Ribosomal protein L7/L12 C-terminal domain	Ribosomal_L12
UHGV-0103421_1	Structural annotation	PF13248	NA	NA
UHGV-0103421_2	UniRef90	UniRef90_A0A1I0JSS0	Zinc-ribbon domain-containing protein	NA
UHGV-0103421_2	eggNOG-mapper	1235793.C809_04674	NA	NA
UHGV-0103421_3	eggNOG-mapper	742740.HMPREF9474_01533	NA	NA
UHGV-0103421_5	KOfam	K01759	GLO1, gloA; lactoylglutathione lyase [EC:4.4.1.5]	NA
UHGV-0103421_5	UniRef90	UniRef90_A0A174MIR2	Bleomycin resistance protein	NA
UHGV-0103421_5	eggNOG-mapper	742740.HMPREF9474_01535	cog cog0346	NA
UHGV-0103421_5	Pfam	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	Glyoxalase
UHGV-0103421_5	COG	COG0346	Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family	NA
UHGV-0103421_6	UniRef90	UniRef90_UPI0019233591	helix-turn-helix domain-containing protein	NA
UHGV-0103421_6	eggNOG-mapper	1120998.AUFC01000012_gene488	sequence-specific DNA binding	NA
UHGV-0103421_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0103421_6	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0103421_8	AcrCatalog	cluster_29073	NA	NA
UHGV-0103421_9	PHROG	phrog_25567	NA	unknown function
UHGV-0103421_9	eggNOG-mapper	411469.EUBHAL_00738	NA	NA
UHGV-0103421_9	AcrCatalog	cluster_37554	NA	NA
UHGV-0103421_10	KOfam	K19118	csd2, cas7; CRISPR-associated protein Csd2	NA
UHGV-0103421_10	UniRef90	UniRef90_E7GTP3	Csd2 family CRISPR-associated protein	NA
UHGV-0103421_10	eggNOG-mapper	742740.HMPREF9474_04288	NA	NA
UHGV-0103421_10	PADLOC	cas_Csd2	CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	CRISPR-CAS
UHGV-0103421_10	Pfam	PF05107	CRISPR-associated protein Cas7	Cas_Cas7
UHGV-0103421_10	NCBIFam	TIGR02589.1	type I-C CRISPR-associated protein Cas7/Csd2	NA
UHGV-0103421_10	COG	COG3649	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	NA
UHGV-0103421_10	Structural annotation	PF05107, TIGR02589, COG3649	NA	NA
UHGV-0103421_12	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0103421_12	UniRef90	UniRef90_UPI0015703A99	NA	NA
UHGV-0103421_12	eggNOG-mapper	431943.CKL_1924	NA	NA
UHGV-0103421_12	Pfam	PF10097	NA	DUF2335
UHGV-0103421_12	COG	COG5346	NA	NA
UHGV-0103421_13	PHROG	phrog_38078	NA	unknown function
UHGV-0103421_13	UniRef90	UniRef90_E7GTP4	Lysozyme	NA
UHGV-0103421_13	eggNOG-mapper	742740.HMPREF9474_04289	Peptidoglycan-binding domain 1 protein	NA
UHGV-0103421_13	Pfam	PF05257	CHAP domain	CHAP
UHGV-0103421_13	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0103421_13	Structural annotation	PF00877, PF19127, TIGR02594, TIGR04035, COG3738	NA	NA
UHGV-0103421_14	PHROG	phrog_1129	holin	lysis
UHGV-0103421_14	UniRef90	UniRef90_A0A2N0KEV2	Enolase	NA
UHGV-0103421_14	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0103421_14	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0103421_14	Structural annotation	PF06946	NA	NA
UHGV-0103421_15	PHROG	phrog_1009	NA	unknown function
UHGV-0103421_15	UniRef90	UniRef90_A0A3E2WI44	Branched-chain amino acid ABC transporter permease	NA
UHGV-0103421_15	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-0103421_17	PHROG	phrog_19111	NA	unknown function
UHGV-0103421_17	eggNOG-mapper	742740.HMPREF9474_03519	ATPase involved in DNA repair	NA
UHGV-0103421_17	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0103421_17	Structural annotation	PF16351	NA	NA
UHGV-0103421_18	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0103421_19	PHROG	phrog_1780	tail collar fiber protein	tail
UHGV-0103421_19	UniRef90	UniRef90_UPI0008BD6C3E	phage tail protein	NA
UHGV-0103421_19	eggNOG-mapper	610130.Closa_0857	Phage tail-collar fibre protein	NA
UHGV-0103421_20	PHROG	phrog_48	tail protein	tail
UHGV-0103421_20	UniRef90	UniRef90_D6DIV1	Phage tail protein (Tail_P2_I)	NA
UHGV-0103421_20	eggNOG-mapper	97139.C824_03362	Phage tail protein (Tail_P2_I)	NA
UHGV-0103421_20	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0103421_20	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0103421_20	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0103421_21	PHROG	phrog_6	baseplate protein	tail
UHGV-0103421_21	UniRef90	UniRef90_U2DIA1	Baseplate J-like protein	NA
UHGV-0103421_21	eggNOG-mapper	610130.Closa_0855	baseplate J-like protein	NA
UHGV-0103421_21	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0103421_21	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0103421_21	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0103421_22	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0103421_22	UniRef90	UniRef90_A0A7X5ICD6	GPW_gp25 domain-containing protein	NA
UHGV-0103421_22	eggNOG-mapper	693746.OBV_22750	GPW Gp25 family protein	NA
UHGV-0103421_22	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0103421_23	PHROG	phrog_76	tail protein	tail
UHGV-0103421_23	UniRef90	UniRef90_D6DIV0	Phage protein U	NA
UHGV-0103421_23	eggNOG-mapper	610130.Closa_0853	Phage P2 GpU	NA
UHGV-0103421_23	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0103421_23	COG	COG3499	NA	NA
UHGV-0103421_23	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0103421_24	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0103421_24	UniRef90	UniRef90_U2C5Q0	Phage_base_V domain-containing protein	NA
UHGV-0103421_24	eggNOG-mapper	610130.Closa_0852	Baseplate assembly protein	NA
UHGV-0103421_24	Pfam	PF04717	Type VI secretion system/phage-baseplate injector OB domain	Phage_base_V
UHGV-0103421_24	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0103421_24	Structural annotation	PF01176, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0103421_25	KOfam	K06905	NA	NA
UHGV-0103421_25	PHROG	phrog_52	tail protein	tail
UHGV-0103421_25	UniRef90	UniRef90_U2DD48	LysM domain protein	NA
UHGV-0103421_25	eggNOG-mapper	411470.RUMGNA_00242	COG3500 Phage protein D	NA
UHGV-0103421_25	Pfam	PF01476	LysM domain	LysM
UHGV-0103421_25	COG	COG3500	NA	NA
UHGV-0103421_25	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0103421_26	PHROG	phrog_46	tail protein	tail
UHGV-0103421_26	UniRef90	UniRef90_D6DIU8	Phage Tail Protein X	NA
UHGV-0103421_26	eggNOG-mapper	445972.ANACOL_00192	Phage Tail Protein X	NA
UHGV-0103421_26	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0103421_26	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0103421_26	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0103421_27	PHROG	phrog_19074	NA	unknown function
UHGV-0103421_27	UniRef90	UniRef90_A0A5M8BMV6	Phage tail tape measure protein	NA
UHGV-0103421_27	eggNOG-mapper	428127.EUBDOL_01214	Phage tail tape measure protein, TP901 family	NA
UHGV-0103421_27	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0103421_27	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0103421_27	COG	COG3883	NA	NA
UHGV-0103421_27	Structural annotation	PF10145, PF12026, TIGR01760, COG5280	NA	NA
UHGV-0103421_28	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0103421_28	UniRef90	UniRef90_A0A3R6RY94	Phage tail assembly protein	NA
UHGV-0103421_28	eggNOG-mapper	97139.C824_03371	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0103421_28	Structural annotation	PF10109	NA	NA
UHGV-0103421_29	KOfam	K06908	NA	NA
UHGV-0103421_29	PHROG	phrog_55	head closure	connector
UHGV-0103421_29	UniRef90	UniRef90_U2C5P5	Phage tail tube protein FII	NA
UHGV-0103421_29	eggNOG-mapper	610130.Closa_0847	Phage tail tube protein FII	NA
UHGV-0103421_29	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0103421_29	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0103421_29	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0103421_30	KOfam	K06907	NA	NA
UHGV-0103421_30	PHROG	phrog_23	tail sheath	tail
UHGV-0103421_30	UniRef90	UniRef90_D6DIU3	Phage tail sheath protein FI	NA
UHGV-0103421_30	eggNOG-mapper	610130.Closa_0846	COG3497 Phage tail sheath protein FI	NA
UHGV-0103421_30	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0103421_30	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0103421_31	PHROG	phrog_17039	NA	unknown function
UHGV-0103421_32	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0103421_32	eggNOG-mapper	411470.RUMGNA_00234	NA	NA
UHGV-0103421_32	Structural annotation	PF08873	NA	NA
UHGV-0103421_33	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0103421_33	UniRef90	UniRef90_UPI00192220AE	phage tail protein	NA
UHGV-0103421_33	eggNOG-mapper	478749.BRYFOR_07541	NA	NA
UHGV-0103421_33	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0103421_33	Structural annotation	PF06763	NA	NA
UHGV-0103421_34	PHROG	phrog_2551	minor tail protein	tail
UHGV-0103421_34	UniRef90	UniRef90_A0A318EKR9	ATP-binding sugar transporter Gifsy-2	NA
UHGV-0103421_34	eggNOG-mapper	478749.BRYFOR_07540	ATP-binding sugar transporter from pro-phage	NA
UHGV-0103421_34	Structural annotation	PF13856	NA	NA
UHGV-0103421_35	PHROG	phrog_122	head decoration	head and packaging
UHGV-0103421_35	UniRef90	UniRef90_UPI001921F22A	NA	NA
UHGV-0103421_35	eggNOG-mapper	478749.BRYFOR_07538	NA	NA
UHGV-0103421_35	Pfam	PF09956	NA	DUF2190
UHGV-0103421_35	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0103421_36	PHROG	phrog_133	head maturation protease	head and packaging
UHGV-0103421_36	UniRef90	UniRef90_A0A7X2NKL2	Mu-like_gpT domain-containing protein	NA
UHGV-0103421_36	eggNOG-mapper	887325.HMPREF0381_0386	serine-type endopeptidase activity	NA
UHGV-0103421_36	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0103421_36	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0103421_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0103421_37	UniRef90	UniRef90_U2C5R3	50S ribosomal protein L12P domain protein	NA
UHGV-0103421_38	KOfam	K06904	NA	NA
UHGV-0103421_38	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0103421_38	UniRef90	UniRef90_U2DD62	Caudovirus prohead protease	NA
UHGV-0103421_38	eggNOG-mapper	887325.HMPREF0381_0385	Caudovirus prohead serine protease	NA
UHGV-0103421_38	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0103421_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0103421_38	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0103421_39	PHROG	phrog_21	portal protein	head and packaging
UHGV-0103421_39	UniRef90	UniRef90_U2DIA9	Phage portal protein, lambda family	NA
UHGV-0103421_39	eggNOG-mapper	411470.RUMGNA_00227	Phage portal protein, lambda family	NA
UHGV-0103421_39	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0103421_39	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0103421_39	COG	COG5511	Phage capsid protein	NA
UHGV-0103421_39	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0103421_40	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0103421_40	UniRef90	UniRef90_A0A5M8BQQ7	Peptidylprolyl isomerase	NA
UHGV-0103421_40	eggNOG-mapper	887325.HMPREF0381_0383	NA	NA
UHGV-0103421_41	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0103421_41	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0103421_41	UniRef90	UniRef90_A0A1C6EMP0	Bacteriophage tail assembly protein	NA
UHGV-0103421_41	eggNOG-mapper	1415774.U728_496	Phage terminase large subunit (GpA)	NA
UHGV-0103421_41	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0103421_41	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0103421_41	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0103421_41	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0103421_42	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0103421_42	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0103421_42	UniRef90	UniRef90_D6DIT3	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0103421_42	eggNOG-mapper	1415774.U728_495	NA	NA
UHGV-0103421_42	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0103421_42	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0103421_43	PHROG	phrog_15411	NA	unknown function
UHGV-0103421_43	UniRef90	UniRef90_UPI001A9A99BD	NA	NA
UHGV-0103421_43	eggNOG-mapper	1499684.CCNP01000020_gene2275	NA	NA
UHGV-0103421_43	Pfam	PF13271	NA	DUF4062
UHGV-0103421_43	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA
UHGV-0103421_44	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0103421_44	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0103421_44	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-0103421_44	Structural annotation	PF04545	NA	NA
UHGV-0103421_45	AcrCatalog	cluster_47354	NA	NA
UHGV-0103421_48	eggNOG-mapper	1235802.C823_04654	NA	NA
UHGV-0103421_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0103421_53	UniRef90	UniRef90_UPI001897DFA1	phosphoadenosine phosphosulfate reductase	NA
UHGV-0103421_53	eggNOG-mapper	742733.HMPREF9469_01838	sulfate reduction	NA
UHGV-0103421_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0103421_53	Structural annotation	PF01507, MF_00063, TIGR02055, COG0175	NA	NA
UHGV-0103421_54	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0103421_54	UniRef90	UniRef90_A0A3R5XSQ0	SAM-dependent methyltransferase	NA
UHGV-0103421_54	eggNOG-mapper	1395513.P343_12775	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0103421_54	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0103421_54	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0103421_54	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0103421_56	PHROG	phrog_36365	NA	unknown function
UHGV-0103421_56	eggNOG-mapper	476272.RUMHYD_01925	NA	NA
UHGV-0103421_57	UniRef90	UniRef90_UPI00189796FC	zinc-ribbon domain-containing protein	NA
UHGV-0103421_58	UniRef90	UniRef90_A0A174WPW5	LexA repressor	NA
UHGV-0103421_58	eggNOG-mapper	1235799.C818_03301	LexA DNA binding domain	NA
UHGV-0103421_58	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0103421_58	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0103421_59	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0103421_59	UniRef90	UniRef90_S0A2V1	DNA replication protein	NA
UHGV-0103421_59	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0103421_59	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0103421_60	PHROG	phrog_2113	NA	unknown function
UHGV-0103421_60	Structural annotation	PF01978, TIGR01610, COG3388	NA	NA
UHGV-0103421_61	PHROG	phrog_7566	NA	unknown function
UHGV-0103421_61	UniRef90	UniRef90_A0A417GG52	Phosphoenolpyruvate carboxykinase	NA
UHGV-0103421_61	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0103421_62	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0103421_62	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0103421_62	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0103421_63	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0103421_63	eggNOG-mapper	1238184.CM001792_gene2549	NA	NA
UHGV-0103421_63	Structural annotation	PF09588, TIGR04328, COG5377	NA	NA
UHGV-0103421_64	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0103421_64	UniRef90	UniRef90_UPI00118460F7	NA	NA
UHGV-0103421_64	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0103421_64	Pfam	PF06378	NA	DUF1071
UHGV-0103421_64	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0103421_65	PHROG	phrog_30234	NA	unknown function
UHGV-0103421_65	eggNOG-mapper	33035.JPJF01000071_gene4461	NA	NA
UHGV-0103421_69	Structural annotation	PF21291, NF041951, COG1513	NA	NA
UHGV-0103421_71	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0103421_75	eggNOG-mapper	397290.C810_05154	NA	NA