UHGV-0103450

Genome information

Genome length 41,291 bps

CDS count 58

Completeness 97.83% (high-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103450
vOTU ID	vOTU-014033
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_216109
BioSample	SAMEA3541587
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.83% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.11
Jumbo phage	No

Genome content
Genome length	41,291 bps
GC content	55.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.01%
Average CDS length	665.95 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103450_1	KOfam	K14059	int; integrase	NA
UHGV-0103450_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0103450_1	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0103450_1	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0103450_1	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0103450_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103450_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0103450_1	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0103450_2	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0103450_2	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-0103450_2	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-0103450_2	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103450_3	eggNOG-mapper	693746.OBV_01960	Peptidase S24-like	NA
UHGV-0103450_3	COG	COG0864	Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain	NA
UHGV-0103450_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0103450_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0103450_4	UniRef90	UniRef90_A0A645D116	LexA repressor	NA
UHGV-0103450_4	eggNOG-mapper	913865.DOT_1313	Peptidase S24-like	NA
UHGV-0103450_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103450_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0103450_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0103450_4	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0103450_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0103450_5	PHROG	phrog_7241	transcriptional regulator	transcription regulation
UHGV-0103450_5	UniRef90	UniRef90_R6LL94	HTH-type transcriptional regulator HipB	NA
UHGV-0103450_5	eggNOG-mapper	536233.CLO_2836	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0103450_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103450_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0103450_7	PHROG	phrog_7688	NA	unknown function
UHGV-0103450_7	UniRef90	UniRef90_A0A7V1XI18	Serine protease	NA
UHGV-0103450_7	eggNOG-mapper	1307437.J139_15322	Trypsin-like peptidase domain	NA
UHGV-0103450_7	Pfam	PF13365	Trypsin-like peptidase domain	Trypsin_2
UHGV-0103450_7	COG	COG3591	V8-like Glu-specific endopeptidase	NA
UHGV-0103450_7	Structural annotation	PF12381, NF033740, COG0265	NA	NA
UHGV-0103450_8	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0103450_9	PHROG	phrog_7704	NA	unknown function
UHGV-0103450_9	Pfam	PF04448	NA	DUF551
UHGV-0103450_10	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0103450_11	Structural annotation	PF07453	NA	NA
UHGV-0103450_12	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0103450_12	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0103450_12	eggNOG-mapper	1203606.HMPREF1526_01889	replication terminator protein, phage associated	NA
UHGV-0103450_13	PHROG	phrog_1029	NA	unknown function
UHGV-0103450_13	UniRef90	UniRef90_H6LCD3	Phage-like protein	NA
UHGV-0103450_13	eggNOG-mapper	756499.Desde_1052	NA	NA
UHGV-0103450_13	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0103450_16	PHROG	phrog_14970	NA	unknown function
UHGV-0103450_16	eggNOG-mapper	397291.C804_03856	double-strand break repair protein	NA
UHGV-0103450_16	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0103450_16	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0103450_16	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0103450_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0103450_17	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0103450_17	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0103450_17	Structural annotation	PF05772	NA	NA
UHGV-0103450_18	PHROG	phrog_7566	NA	unknown function
UHGV-0103450_18	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0103450_18	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0103450_19	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0103450_19	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0103450_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0103450_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0103450_20	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0103450_20	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0103450_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0103450_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0103450_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0103450_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0103450_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0103450_21	PHROG	phrog_15768	NA	unknown function
UHGV-0103450_21	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0103450_21	eggNOG-mapper	642492.Clole_0946	DnaD domain protein	NA
UHGV-0103450_21	Pfam	PF19808	NA	DUF6291
UHGV-0103450_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0103450_21	Structural annotation	PF19808	NA	NA
UHGV-0103450_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0103450_22	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0103450_22	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0103450_22	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0103450_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0103450_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0103450_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0103450_24	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0103450_24	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0103450_24	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-0103450_24	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-0103450_24	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0103450_24	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0103450_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0103450_24	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0103450_24	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0103450_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0103450_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0103450_25	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0103450_25	eggNOG-mapper	1519439.JPJG01000060_gene1872	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0103450_25	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0103450_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0103450_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0103450_25	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0103450_26	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0103450_26	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0103450_26	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0103450_26	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0103450_26	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0103450_26	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0103450_26	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0103450_26	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0103450_30	PHROG	phrog_3136	NA	unknown function
UHGV-0103450_30	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0103450_30	eggNOG-mapper	77048.O80195_9CAUD	NA	NA
UHGV-0103450_33	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0103450_33	Structural annotation	TIGR01636	NA	NA
UHGV-0103450_34	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0103450_34	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0103450_34	Structural annotation	PF13542	NA	NA
UHGV-0103450_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103450_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0103450_35	UniRef90	UniRef90_A0A1C6J947	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0103450_35	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0103450_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0103450_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0103450_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103450_35	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0103450_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0103450_37	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0103450_37	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0103450_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0103450_38	PHROG	phrog_9479	NA	unknown function
UHGV-0103450_38	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0103450_38	Structural annotation	PF15529	NA	NA
UHGV-0103450_39	PHROG	phrog_8680	NA	unknown function
UHGV-0103450_39	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0103450_39	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0103450_39	Pfam	PF14386	NA	DUF4417
UHGV-0103450_39	Structural annotation	PF14386	NA	NA
UHGV-0103450_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0103450_40	UniRef90	UniRef90_A0A1C6I982	Phage minor capsid protein 2	NA
UHGV-0103450_40	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0103450_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103450_40	COG	COG2369	NA	NA
UHGV-0103450_40	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0103450_42	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0103450_42	UniRef90	UniRef90_UPI00164D9F94	phage scaffolding protein	NA
UHGV-0103450_42	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0103450_42	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0103450_42	Structural annotation	PF06810	NA	NA
UHGV-0103450_43	PHROG	phrog_212	major head protein	head and packaging
UHGV-0103450_43	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0103450_43	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0103450_43	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0103450_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0103450_44	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0103450_45	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0103450_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0103450_46	UniRef90	UniRef90_UPI0006805998	minor capsid protein	NA
UHGV-0103450_46	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0103450_46	Structural annotation	PF11114	NA	NA
UHGV-0103450_47	PHROG	phrog_3266	tail completion	connector
UHGV-0103450_47	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0103450_47	Structural annotation	PF20765	NA	NA
UHGV-0103450_48	PHROG	phrog_3099	NA	unknown function
UHGV-0103450_48	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0103450_48	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0103450_49	PHROG	phrog_11299	NA	unknown function
UHGV-0103450_49	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0103450_49	Structural annotation	PF10666	NA	NA
UHGV-0103450_50	PHROG	phrog_706	NA	unknown function
UHGV-0103450_50	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0103450_50	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0103450_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0103450_50	Structural annotation	PF06854	NA	NA
UHGV-0103450_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0103450_51	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0103450_51	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0103450_51	COG	COG1511	NA	NA
UHGV-0103450_51	Structural annotation	PF16789, TIGR02473, COG2882	NA	NA
UHGV-0103450_52	PHROG	phrog_1194	NA	unknown function
UHGV-0103450_52	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0103450_52	eggNOG-mapper	1211844.CBLM010000023_gene979	NA	NA
UHGV-0103450_52	Pfam	PF20458	NA	DUF6711
UHGV-0103450_52	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0103450_53	PHROG	phrog_6616	tail protein	tail
UHGV-0103450_53	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0103450_53	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0103450_54	PHROG	phrog_372	tail protein	tail
UHGV-0103450_54	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0103450_54	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0103450_54	Pfam	PF05895	NA	DUF859
UHGV-0103450_54	COG	COG4675	Phage tail collar domain	NA
UHGV-0103450_54	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0103450_56	eggNOG-mapper	479433.Caci_0480	ADP-glyceromanno-heptose 6-epimerase activity	NA
UHGV-0103450_56	COG	COG3306	Glycosyltransferase involved in LPS biosynthesis, GR25 family	NA
UHGV-0103450_56	Structural annotation	PF03071, NF038299, COG3306	NA	NA
UHGV-0103450_57	PHROG	phrog_199	holin	lysis
UHGV-0103450_57	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0103450_57	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0103450_57	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0103450_57	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0103450_57	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0103450_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0103450_58	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0103450_58	PHROG	phrog_35436	amidase	lysis
UHGV-0103450_58	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0103450_58	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0103450_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0103450_58	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0103450_58	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0103450_58	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA