UHGV-0103482

Genome information

Genome length 25,461 bps

CDS count 35

Completeness 64.55% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103482
vOTU ID	vOTU-042392
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_207386
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.82
Jumbo phage	No

Genome content
Genome length	25,461 bps
GC content	31.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	93.46%
Average CDS length	683.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103482_1	UniRef90	UniRef90_A0A374RW96	IS1634 family transposase	NA
UHGV-0103482_1	eggNOG-mapper	97139.C824_00399	PFAM transposase, IS4 family protein	NA
UHGV-0103482_1	Pfam	PF01609	Transposase DDE domain	DDE_Tnp_1
UHGV-0103482_1	NCBIFam	NF033559.1	IS1634 family transposase	NA
UHGV-0103482_1	COG	COG5421	Transposase	NA
UHGV-0103482_1	Structural annotation	PF13701, NF033559, COG5421	NA	NA
UHGV-0103482_3	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0103482_3	UniRef90	UniRef90_UPI000BBBB6BA	NA	NA
UHGV-0103482_3	eggNOG-mapper	556263.FSEG_00849	NA	NA
UHGV-0103482_3	Pfam	PF10097	NA	DUF2335
UHGV-0103482_3	COG	COG5346	NA	NA
UHGV-0103482_3	Structural annotation	PF10097, COG5346	NA	NA
UHGV-0103482_4	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0103482_4	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0103482_4	UniRef90	UniRef90_A0A2T3FZ23	Sigma70_r4_2 domain-containing protein	NA
UHGV-0103482_4	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0103482_4	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0103482_4	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0103482_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103482_4	Structural annotation	PF02796, NF040601, COG5484	NA	NA
UHGV-0103482_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103482_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0103482_5	UniRef90	UniRef90_A0A2T3FZ43	PBSX family phage terminase large subunit	NA
UHGV-0103482_5	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0103482_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0103482_5	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0103482_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0103482_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103482_5	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0103482_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0103482_6	UniRef90	UniRef90_UPI001F061150	phage portal protein	NA
UHGV-0103482_6	eggNOG-mapper	428127.EUBDOL_01228	phage minor capsid protein	NA
UHGV-0103482_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0103482_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0103482_7	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0103482_7	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0103482_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103482_7	COG	COG2369	NA	NA
UHGV-0103482_7	Structural annotation	PF06152	NA	NA
UHGV-0103482_8	eggNOG-mapper	936573.HMPREF1147_1323	NA	NA
UHGV-0103482_8	COG	COG3567	NA	NA
UHGV-0103482_10	PHROG	phrog_1374	NA	unknown function
UHGV-0103482_11	PHROG	phrog_30609	NA	unknown function
UHGV-0103482_11	Structural annotation	PF21485	NA	NA
UHGV-0103482_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0103482_12	UniRef90	UniRef90_UPI00142FDD09	phage scaffolding protein	NA
UHGV-0103482_12	eggNOG-mapper	139871.A9D9T0_9VIRU	Phage minor structural protein GP20	NA
UHGV-0103482_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0103482_12	Structural annotation	PF06810	NA	NA
UHGV-0103482_13	PHROG	phrog_212	major head protein	head and packaging
UHGV-0103482_13	UniRef90	UniRef90_A0A2T3FZ12	Phage capsid protein	NA
UHGV-0103482_13	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0103482_13	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0103482_13	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0103482_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0103482_15	PHROG	phrog_3366	NA	unknown function
UHGV-0103482_15	eggNOG-mapper	411490.ANACAC_00775	NA	NA
UHGV-0103482_15	Pfam	PF20536	NA	DUF6751
UHGV-0103482_15	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0103482_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0103482_16	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-0103482_16	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0103482_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0103482_16	Structural annotation	PF11114	NA	NA
UHGV-0103482_17	PHROG	phrog_3266	tail completion	connector
UHGV-0103482_17	UniRef90	UniRef90_A0A416DT59	Chloramphenicol resistance protein	NA
UHGV-0103482_17	eggNOG-mapper	1540257.JQMW01000013_gene737	NA	NA
UHGV-0103482_17	Structural annotation	PF12691	NA	NA
UHGV-0103482_18	PHROG	phrog_3099	NA	unknown function
UHGV-0103482_18	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0103482_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0103482_19	Structural annotation	PF10666	NA	NA
UHGV-0103482_20	PHROG	phrog_706	NA	unknown function
UHGV-0103482_20	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0103482_20	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0103482_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0103482_20	Structural annotation	PF06854	NA	NA
UHGV-0103482_21	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0103482_21	eggNOG-mapper	469596.HMPREF9488_01328	tape measure	NA
UHGV-0103482_21	COG	COG5412	Phage-related protein	NA
UHGV-0103482_22	PHROG	phrog_1194	NA	unknown function
UHGV-0103482_22	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0103482_23	PHROG	phrog_6616	tail protein	tail
UHGV-0103482_23	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0103482_23	Structural annotation	NF033848, COG4926	NA	NA
UHGV-0103482_24	PHROG	phrog_2566	NA	unknown function
UHGV-0103482_25	Structural annotation	PF07761	NA	NA
UHGV-0103482_28	Structural annotation	TIGR04362	NA	NA
UHGV-0103482_30	PHROG	phrog_199	holin	lysis
UHGV-0103482_30	UniRef90	UniRef90_UPI001D0A8437	phage holin family protein	NA
UHGV-0103482_30	eggNOG-mapper	1504823.CCMM01000008_gene1022	toxin secretion phage lysis holin	NA
UHGV-0103482_30	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0103482_30	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0103482_30	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0103482_30	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0103482_31	PHROG	phrog_1048	NA	unknown function
UHGV-0103482_31	UniRef90	UniRef90_UPI001D0A8EC5	NA	NA
UHGV-0103482_31	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0103482_31	Pfam	PF11195	NA	DUF2829
UHGV-0103482_31	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0103482_31	Structural annotation	PF11195	NA	NA
UHGV-0103482_32	UniRef90	UniRef90_UPI001D0AA218	NA	NA
UHGV-0103482_32	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0103482_32	Structural annotation	PF14359	NA	NA
UHGV-0103482_33	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0103482_33	PHROG	phrog_1493	endolysin	lysis
UHGV-0103482_33	UniRef90	UniRef90_A0A2T3FZ87	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0103482_33	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0103482_33	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0103482_33	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0103482_33	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0103482_33	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0103482_34	PHROG	phrog_1281	NA	unknown function
UHGV-0103482_34	UniRef90	UniRef90_A0A2T3G2D7	NA	NA
UHGV-0103482_34	eggNOG-mapper	679192.HMPREF9013_1310	NA	NA
UHGV-0103482_34	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0103482_34	COG	COG3600	NA	NA
UHGV-0103482_35	eggNOG-mapper	1227268.HMPREF1552_00029	NA	NA