UHGV-0103568

Genome information

Genome length 28,690 bps

CDS count 48

Completeness 75.08% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103568
vOTU ID	vOTU-042393
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_226207
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.52
Jumbo phage	No

Genome content
Genome length	28,690 bps
GC content	46.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.32%
Average CDS length	556.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103568_1	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0103568_1	eggNOG-mapper	479437.Elen_2636	Phage tail tape measure protein TP901	NA
UHGV-0103568_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0103568_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0103568_1	COG	COG5283	Phage-related tail protein	NA
UHGV-0103568_2	PHROG	phrog_706	NA	unknown function
UHGV-0103568_2	UniRef90	UniRef90_A0A1C5QVP1	Bacteriophage Gp15 protein	NA
UHGV-0103568_2	eggNOG-mapper	411461.DORFOR_00737	COG NOG24969 non supervised orthologous group	NA
UHGV-0103568_2	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0103568_2	Structural annotation	PF06854	NA	NA
UHGV-0103568_3	PHROG	phrog_3099	NA	unknown function
UHGV-0103568_3	eggNOG-mapper	1235792.C808_05373	NA	NA
UHGV-0103568_3	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0103568_4	PHROG	phrog_3266	tail completion	connector
UHGV-0103568_4	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0103568_4	Structural annotation	PF12691	NA	NA
UHGV-0103568_5	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0103568_5	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0103568_5	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0103568_5	Structural annotation	PF11114	NA	NA
UHGV-0103568_6	PHROG	phrog_3366	NA	unknown function
UHGV-0103568_6	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0103568_6	Pfam	PF20536	NA	DUF6751
UHGV-0103568_6	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0103568_7	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0103568_7	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0103568_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-0103568_8	UniRef90	UniRef90_A0A1C5QUP5	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0103568_8	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0103568_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0103568_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0103568_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0103568_8	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0103568_9	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0103568_9	eggNOG-mapper	1235792.C808_05367	NA	NA
UHGV-0103568_9	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0103568_10	KOfam	K07584	NA	NA
UHGV-0103568_10	PHROG	phrog_4478	peptidase	other
UHGV-0103568_10	UniRef90	UniRef90_A0A1C5QUN2	Predicted ribosomal protein	NA
UHGV-0103568_10	eggNOG-mapper	411462.DORLON_00788	Pfam:Peptidase_C108	NA
UHGV-0103568_10	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0103568_10	COG	COG2868	NA	NA
UHGV-0103568_10	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0103568_11	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0103568_11	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0103568_11	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0103568_11	Structural annotation	PF14359	NA	NA
UHGV-0103568_12	PHROG	phrog_21498	NA	unknown function
UHGV-0103568_12	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0103568_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0103568_12	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0103568_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0103568_14	UniRef90	UniRef90_UPI001917634A	minor capsid protein	NA
UHGV-0103568_14	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0103568_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103568_14	COG	COG2369	NA	NA
UHGV-0103568_14	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0103568_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0103568_15	UniRef90	UniRef90_A0A1C5QU10	Phage portal protein, putative, A118 family	NA
UHGV-0103568_15	eggNOG-mapper	411462.DORLON_00795	COG NOG25118 non supervised orthologous group	NA
UHGV-0103568_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0103568_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0103568_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103568_16	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0103568_16	UniRef90	UniRef90_A0A1C5QTK5	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0103568_16	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0103568_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0103568_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0103568_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103568_16	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0103568_17	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0103568_17	UniRef90	UniRef90_UPI00189AF2D9	phage terminase small subunit	NA
UHGV-0103568_17	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-0103568_17	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0103568_17	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0103568_17	COG	COG5484	NA	NA
UHGV-0103568_17	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0103568_18	PHROG	phrog_11237	NA	unknown function
UHGV-0103568_18	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0103568_19	PHROG	phrog_6568	NA	unknown function
UHGV-0103568_20	COG	COG4260	Membrane protease subunit, stomatin/prohibitin family, contains C-terminal Zn-ribbon domain	NA
UHGV-0103568_22	PHROG	phrog_3205	NA	unknown function
UHGV-0103568_22	eggNOG-mapper	1158602.I590_02965	NA	NA
UHGV-0103568_22	Pfam	PF09643	YopX protein	YopX
UHGV-0103568_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0103568_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0103568_24	UniRef90	UniRef90_UPI001C026824	single-stranded DNA-binding protein	NA
UHGV-0103568_24	eggNOG-mapper	658088.HMPREF0987_02000	Single-strand binding protein family	NA
UHGV-0103568_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0103568_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0103568_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0103568_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0103568_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0103568_27	PHROG	phrog_2776	NA	unknown function
UHGV-0103568_27	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0103568_27	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0103568_28	eggNOG-mapper	1234679.BN424_1881	NA	NA
UHGV-0103568_29	PHROG	phrog_29887	NA	unknown function
UHGV-0103568_29	UniRef90	UniRef90_UPI001379B79E	NA	NA
UHGV-0103568_30	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0103568_30	UniRef90	UniRef90_UPI001C021136	ORF6C domain-containing protein	NA
UHGV-0103568_30	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0103568_30	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0103568_30	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0103568_30	COG	COG3617	Prophage antirepressor	NA
UHGV-0103568_30	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0103568_31	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0103568_31	UniRef90	UniRef90_UPI0015704587	NA	NA
UHGV-0103568_31	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-0103568_31	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0103568_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0103568_31	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0103568_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0103568_32	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0103568_32	UniRef90	UniRef90_UPI001C01AEC7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0103568_32	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0103568_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0103568_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0103568_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0103568_33	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0103568_33	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0103568_33	UniRef90	UniRef90_UPI00156E3AA2	recombinase RecT	NA
UHGV-0103568_33	eggNOG-mapper	658088.HMPREF0987_00529	RecT family	NA
UHGV-0103568_33	Pfam	PF03837	RecT family	RecT
UHGV-0103568_33	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0103568_33	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0103568_33	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0103568_34	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0103568_34	UniRef90	UniRef90_UPI0015715373	YqaJ viral recombinase family protein	NA
UHGV-0103568_34	eggNOG-mapper	411902.CLOBOL_00693	YqaJ-like viral recombinase domain	NA
UHGV-0103568_34	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0103568_34	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0103568_34	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0103568_34	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0103568_36	PHROG	phrog_5070	NA	unknown function
UHGV-0103568_36	UniRef90	UniRef90_UPI00189ACE43	polymer-forming cytoskeletal protein	NA
UHGV-0103568_36	eggNOG-mapper	445972.ANACOL_01820	COG NOG06285 non supervised orthologous group	NA
UHGV-0103568_36	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0103568_36	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0103568_36	Structural annotation	NF040481	NA	NA
UHGV-0103568_38	PHROG	phrog_6058	NA	unknown function
UHGV-0103568_38	UniRef90	UniRef90_A0A1C5QR48	Helix-turn-helix	NA
UHGV-0103568_38	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0103568_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103568_38	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0103568_40	UniRef90	UniRef90_R6BIK1	HTH cro/C1-type domain-containing protein	NA
UHGV-0103568_40	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0103568_40	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0103568_41	PHROG	phrog_585	NA	unknown function
UHGV-0103568_41	UniRef90	UniRef90_UPI001654CF6A	NA	NA
UHGV-0103568_41	eggNOG-mapper	1235798.C817_04760	NA	NA
UHGV-0103568_41	Pfam	PF10711	NA	DUF2513
UHGV-0103568_41	Structural annotation	PF10711, TIGR04176, COG5045	NA	NA
UHGV-0103568_43	UniRef90	UniRef90_UPI001EE0CE96	helix-turn-helix domain-containing protein	NA
UHGV-0103568_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0103568_44	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0103568_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103568_44	UniRef90	UniRef90_A0A828T008	HTH cro/C1-type domain-containing protein	NA
UHGV-0103568_44	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0103568_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0103568_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103568_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0103568_44	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0103568_45	PHROG	phrog_87	metallo-protease	other
UHGV-0103568_45	UniRef90	UniRef90_UPI0015D3F2DD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0103568_45	eggNOG-mapper	556261.HMPREF0240_01267	Zn peptidase	NA
UHGV-0103568_45	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0103568_45	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0103568_45	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0103568_47	KOfam	K14059	int; integrase	NA
UHGV-0103568_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0103568_47	UniRef90	UniRef90_A0A1C5QPZ2	Integrase	NA
UHGV-0103568_47	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0103568_47	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0103568_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0103568_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103568_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0103568_47	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0103568_48	KOfam	K03215	rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]	NA
UHGV-0103568_48	PHROG	phrog_11787	DNA methyltransferase	other
UHGV-0103568_48	UniRef90	UniRef90_A0A1C6ILT0	23S rRNA (Uracil-C(5))-methyltransferase RlmCD	NA
UHGV-0103568_48	eggNOG-mapper	742723.HMPREF9477_01763	tRNA (Uracil-5-)-methyltransferase	NA
UHGV-0103568_48	Pfam	PF05958	tRNA (Uracil-5-)-methyltransferase	tRNA_U5-meth_tr
UHGV-0103568_48	NCBIFam	TIGR00479.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA
UHGV-0103568_48	COG	COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	NA