UHGV-0103621

Genome information

Genome length 34,278 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9497

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103621
vOTU ID	vOTU-059541
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_222037
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9497
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.35
Jumbo phage	No

Genome content
Genome length	34,278 bps
GC content	33.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.65%
Average CDS length	613.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103621_1	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0103621_1	PHROG	phrog_12862	NA	unknown function
UHGV-0103621_1	UniRef90	UniRef90_A0A135YRZ2	Methyltransferase	NA
UHGV-0103621_1	eggNOG-mapper	1151292.QEW_4454	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0103621_1	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0103621_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0103621_1	COG	COG0863	DNA modification methylase	NA
UHGV-0103621_1	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0103621_2	UniRef90	UniRef90_A0A095XST5	Protein phosphatase	NA
UHGV-0103621_2	eggNOG-mapper	1219626.HMPREF1639_04815	NA	NA
UHGV-0103621_2	AcrCatalog	cluster_13845	NA	NA
UHGV-0103621_3	PHROG	phrog_2277	NA	unknown function
UHGV-0103621_3	UniRef90	UniRef90_C4IFG6	Conserved domain protein	NA
UHGV-0103621_3	eggNOG-mapper	1035196.HMPREF9998_00550	NA	NA
UHGV-0103621_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0103621_6	PHROG	phrog_6745	endolysin	lysis
UHGV-0103621_6	UniRef90	UniRef90_E0E215	Glycosyl hydrolase family 25	NA
UHGV-0103621_6	eggNOG-mapper	596315.HMPREF0634_0233	Glycosyl hydrolases family 25	NA
UHGV-0103621_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0103621_6	Pfam	PF05257	CHAP domain	CHAP
UHGV-0103621_6	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0103621_6	COG	COG1388	LysM repeat	NA
UHGV-0103621_6	Structural annotation	PF01183, PF04319, NF033202, NF004076, COG3757, COG4991	NA	NA
UHGV-0103621_7	PHROG	phrog_199	holin	lysis
UHGV-0103621_7	UniRef90	UniRef90_E0E214	Toxin secretion/phage lysis holin	NA
UHGV-0103621_7	eggNOG-mapper	1219626.HMPREF1639_07835	Toxin secretion phage lysis holin	NA
UHGV-0103621_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0103621_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0103621_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0103621_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0103621_8	UniRef90	UniRef90_R5JH72	Conserved domain protein	NA
UHGV-0103621_9	PHROG	phrog_33623	NA	unknown function
UHGV-0103621_10	PHROG	phrog_8309	NA	unknown function
UHGV-0103621_10	eggNOG-mapper	596315.HMPREF0634_0229	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0103621_10	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0103621_10	Structural annotation	PF17900	NA	NA
UHGV-0103621_11	PHROG	phrog_34633	NA	unknown function
UHGV-0103621_11	eggNOG-mapper	33035.JPJF01000033_gene2262	NA	NA
UHGV-0103621_11	Structural annotation	PF14545, PF18463, NF010435, COG5513	NA	NA
UHGV-0103621_12	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0103621_12	UniRef90	UniRef90_E0E210	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0103621_12	eggNOG-mapper	596315.HMPREF0634_0228	Phage minor structural protein	NA
UHGV-0103621_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0103621_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0103621_12	COG	COG4926	Phage-related protein	NA
UHGV-0103621_12	Structural annotation	PF06605, PF21466, PF21683, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0103621_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0103621_13	UniRef90	UniRef90_E0E209	Putative phage tail component domain protein	NA
UHGV-0103621_13	eggNOG-mapper	596315.HMPREF0634_0227	NA	NA
UHGV-0103621_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0103621_13	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0103621_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0103621_13	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0103621_14	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0103621_14	UniRef90	UniRef90_E0E208	Phage tail tape measure protein, TP901 family	NA
UHGV-0103621_14	eggNOG-mapper	596315.HMPREF0634_0226	Phage tail tape measure protein, TP901 family	NA
UHGV-0103621_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0103621_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0103621_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0103621_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0103621_15	PHROG	phrog_3033	NA	unknown function
UHGV-0103621_16	PHROG	phrog_709	NA	unknown function
UHGV-0103621_16	UniRef90	UniRef90_A0A0M0GAZ9	Prophage pi2 protein 40	NA
UHGV-0103621_16	eggNOG-mapper	1121871.AUAT01000030_gene1033	NA	NA
UHGV-0103621_16	Structural annotation	PF11836	NA	NA
UHGV-0103621_17	PHROG	phrog_88	major tail protein	tail
UHGV-0103621_17	UniRef90	UniRef90_E0E207	Phage major tail protein, phi13 family	NA
UHGV-0103621_17	eggNOG-mapper	596315.HMPREF0634_0225	phage major tail protein, phi13 family	NA
UHGV-0103621_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0103621_17	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0103621_18	PHROG	phrog_78	tail terminator	connector
UHGV-0103621_18	eggNOG-mapper	596315.HMPREF0634_0224	NA	NA
UHGV-0103621_18	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0103621_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0103621_19	UniRef90	UniRef90_UPI001627B74B	HK97 gp10 family phage protein	NA
UHGV-0103621_19	eggNOG-mapper	1033744.CAEL01000029_gene1278	NA	NA
UHGV-0103621_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0103621_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0103621_20	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0103621_20	UniRef90	UniRef90_E0E204	Putative phage head-tail adaptor	NA
UHGV-0103621_20	eggNOG-mapper	596315.HMPREF0634_0222	head-tail adaptor	NA
UHGV-0103621_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0103621_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0103621_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0103621_21	PHROG	phrog_2550	NA	unknown function
UHGV-0103621_21	UniRef90	UniRef90_A0A0T8BHT1	NA	NA
UHGV-0103621_21	eggNOG-mapper	596315.HMPREF0634_0221	NA	NA
UHGV-0103621_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0103621_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0103621_22	UniRef90	UniRef90_A0A090HXG2	HeH domain-containing protein	NA
UHGV-0103621_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0103621_23	UniRef90	UniRef90_E0E201	Putative phage major capsid protein, HK97 family	NA
UHGV-0103621_23	eggNOG-mapper	596315.HMPREF0634_0219	phage major capsid protein, HK97 family	NA
UHGV-0103621_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0103621_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0103621_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0103621_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0103621_24	KOfam	K06904	NA	NA
UHGV-0103621_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0103621_24	UniRef90	UniRef90_E0E200	Phage prohead protease, HK97 family	NA
UHGV-0103621_24	eggNOG-mapper	596315.HMPREF0634_0218	Caudovirus prohead serine protease	NA
UHGV-0103621_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0103621_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0103621_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0103621_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0103621_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0103621_25	UniRef90	UniRef90_E0E1Z9	Phage portal protein, HK97 family	NA
UHGV-0103621_25	eggNOG-mapper	596315.HMPREF0634_0217	Phage portal protein, HK97 family	NA
UHGV-0103621_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0103621_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0103621_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0103621_25	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0103621_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0103621_26	UniRef90	UniRef90_UPI0016243EE8	terminase large subunit	NA
UHGV-0103621_26	eggNOG-mapper	491915.Aflv_0661	Phage Terminase	NA
UHGV-0103621_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0103621_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0103621_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0103621_26	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0103621_27	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0103621_27	UniRef90	UniRef90_E0E1I4	Putative phage terminase, small subunit, P27 family	NA
UHGV-0103621_27	eggNOG-mapper	596315.HMPREF0634_0388	Phage terminase, small subunit	NA
UHGV-0103621_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0103621_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0103621_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0103621_28	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0103621_28	UniRef90	UniRef90_E0E1I3	HNH endonuclease domain protein	NA
UHGV-0103621_28	eggNOG-mapper	596315.HMPREF0634_0387	HNH nucleases	NA
UHGV-0103621_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0103621_28	Pfam	PF13671	AAA domain	AAA_33
UHGV-0103621_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0103621_28	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0103621_29	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0103621_29	PHROG	phrog_216	integrase	integration and excision
UHGV-0103621_29	UniRef90	UniRef90_E0E1I2	Site-specific recombinase, phage integrase family	NA
UHGV-0103621_29	eggNOG-mapper	596315.HMPREF0634_0386	Site-specific recombinase, phage integrase family	NA
UHGV-0103621_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103621_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0103621_29	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0103621_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0103621_30	UniRef90	UniRef90_R5JLP6	Sigma-70 region 4	NA
UHGV-0103621_30	eggNOG-mapper	1408823.AXUS01000025_gene2668	sigma factor activity	NA
UHGV-0103621_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0103621_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0103621_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0103621_32	UniRef90	UniRef90_E0E1I1	Single-stranded DNA-binding protein	NA
UHGV-0103621_32	eggNOG-mapper	596315.HMPREF0634_0385	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0103621_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0103621_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0103621_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0103621_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0103621_32	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0103621_36	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-0103621_39	PHROG	phrog_24248	NA	unknown function
UHGV-0103621_42	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0103621_42	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0103621_42	UniRef90	UniRef90_R5JBB2	DNA helicase	NA
UHGV-0103621_42	eggNOG-mapper	596315.HMPREF0634_0384	DNA helicase	NA
UHGV-0103621_42	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0103621_42	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0103621_42	COG	COG0305	Replicative DNA helicase	NA
UHGV-0103621_42	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0103621_43	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0103621_43	UniRef90	UniRef90_R5J6G5	Conserved domain protein	NA
UHGV-0103621_43	eggNOG-mapper	596315.HMPREF0634_0383	DnaD domain protein	NA
UHGV-0103621_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0103621_43	Structural annotation	TIGR01610	NA	NA
UHGV-0103621_45	PHROG	phrog_6058	NA	unknown function
UHGV-0103621_45	UniRef90	UniRef90_R5J5Y6	Modification methylase SinI	NA
UHGV-0103621_45	eggNOG-mapper	1111454.HMPREF1250_0785	NA	NA
UHGV-0103621_46	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0103621_46	UniRef90	UniRef90_E0E1H8	HTH cro/C1-type domain-containing protein	NA
UHGV-0103621_46	eggNOG-mapper	596315.HMPREF0634_0382	peptidyl-tyrosine sulfation	NA
UHGV-0103621_46	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0103621_46	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0103621_46	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0103621_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0103621_47	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0103621_47	UniRef90	UniRef90_A0A140KZV3	HTH-type transcriptional regulator Xre	NA
UHGV-0103621_47	eggNOG-mapper	907931.AEIZ01000008_gene1308	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0103621_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0103621_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103621_47	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0103621_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0103621_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0103621_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103621_48	UniRef90	UniRef90_E0E1H5	DNA-binding helix-turn-helix protein	NA
UHGV-0103621_48	eggNOG-mapper	596315.HMPREF0634_0379	PFAM Helix-turn-helix	NA
UHGV-0103621_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103621_48	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0103621_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0103621_49	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0103621_49	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0103621_49	UniRef90	UniRef90_A0A174BZX4	DNA polymerase III polC-type	NA
UHGV-0103621_49	eggNOG-mapper	1123288.SOV_2c03960	DNA polymerase III	NA
UHGV-0103621_49	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0103621_49	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0103621_49	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0103621_49	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0103621_49	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0103621_49	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0103621_50	PHROG	phrog_87	metallo-protease	other
UHGV-0103621_50	UniRef90	UniRef90_A0A069RFX6	Peptidase_M78 domain-containing protein	NA
UHGV-0103621_50	eggNOG-mapper	1121324.CLIT_8c01130	IrrE N-terminal-like domain	NA
UHGV-0103621_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0103621_50	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0103621_51	KOfam	K14059	int; integrase	NA
UHGV-0103621_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0103621_51	UniRef90	UniRef90_E0E4E3	Site-specific recombinase, phage integrase family	NA
UHGV-0103621_51	eggNOG-mapper	596315.HMPREF0634_0158	Belongs to the 'phage' integrase family	NA
UHGV-0103621_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103621_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0103621_51	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0103621_52	eggNOG-mapper	1235793.C809_00526	NA	NA