UHGV-0103698

Genome information

Genome length 34,655 bps

CDS count 41

Completeness 98.85% (high-quality)

geNomad score 0.9569

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103698
vOTU ID	vOTU-060614
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_206738
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.85% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9569
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.47
Jumbo phage	No

Genome content
Genome length	34,655 bps
GC content	39.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	87.39%
Average CDS length	740.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103698_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0103698_1	PHROG	phrog_435	endolysin	lysis
UHGV-0103698_1	UniRef90	UniRef90_R6GGM8	MurNAc-LAA domain-containing protein	NA
UHGV-0103698_1	eggNOG-mapper	1408437.JNJN01000037_gene448	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0103698_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0103698_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0103698_3	PHROG	phrog_23008	tail fiber protein	tail
UHGV-0103698_3	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-0103698_3	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0103698_3	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0103698_6	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0103698_6	UniRef90	UniRef90_UPI0018996BD4	phage tail protein	NA
UHGV-0103698_6	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-0103698_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0103698_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0103698_6	COG	COG4926	Phage-related protein	NA
UHGV-0103698_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0103698_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0103698_7	UniRef90	UniRef90_UPI00100AB7F7	phage tail family protein	NA
UHGV-0103698_7	eggNOG-mapper	272562.CA_C0062	tail component	NA
UHGV-0103698_7	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0103698_7	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0103698_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0103698_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0103698_8	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0103698_8	UniRef90	UniRef90_UPI0013D58210	phage tail tape measure protein	NA
UHGV-0103698_8	eggNOG-mapper	536233.CLO_0896	tail tape measure protein	NA
UHGV-0103698_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0103698_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0103698_9	KOfam	K10352	MYH9s; myosin heavy chain 9/10/11/14	NA
UHGV-0103698_9	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0103698_9	UniRef90	UniRef90_A0A7C7D7E0	Phage tail tape measure protein (Fragment)	NA
UHGV-0103698_9	eggNOG-mapper	997346.HMPREF9374_1109	Phage tail tape measure protein, TP901 family	NA
UHGV-0103698_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0103698_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0103698_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0103698_10	PHROG	phrog_2115	tail protein	tail
UHGV-0103698_10	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0103698_10	Structural annotation	PF11836	NA	NA
UHGV-0103698_11	PHROG	phrog_88	major tail protein	tail
UHGV-0103698_11	UniRef90	UniRef90_R6GFP9	Putative major tail protein	NA
UHGV-0103698_11	eggNOG-mapper	573061.Clocel_3970	phage major tail protein, phi13 family	NA
UHGV-0103698_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0103698_11	COG	COG5492	NA	NA
UHGV-0103698_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0103698_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0103698_12	UniRef90	UniRef90_R6GEE2	Phage protein HK97 gp10 family	NA
UHGV-0103698_12	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0103698_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0103698_12	Structural annotation	TIGR01725	NA	NA
UHGV-0103698_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-0103698_13	UniRef90	UniRef90_A0A1M5PVN3	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0103698_13	eggNOG-mapper	1262449.CP6013_1044	Phage head-tail joining protein	NA
UHGV-0103698_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0103698_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0103698_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0103698_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0103698_14	UniRef90	UniRef90_UPI001BA8BAD6	head-tail connector protein	NA
UHGV-0103698_14	eggNOG-mapper	1399942.U3PCS3_9CAUD	NA	NA
UHGV-0103698_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0103698_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0103698_15	PHROG	phrog_12102	NA	unknown function
UHGV-0103698_15	UniRef90	UniRef90_A0A1M7XXM9	Head fiber protein	NA
UHGV-0103698_15	eggNOG-mapper	1410653.JHVC01000011_gene986	NA	NA
UHGV-0103698_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0103698_16	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-0103698_16	eggNOG-mapper	903814.ELI_1299	Phage capsid family	NA
UHGV-0103698_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0103698_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0103698_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0103698_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0103698_17	KOfam	K06904	NA	NA
UHGV-0103698_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0103698_17	UniRef90	UniRef90_R6GRF8	Phage prohead protease HK97 family	NA
UHGV-0103698_17	eggNOG-mapper	1414720.CBYM010000001_gene698	Phage prohead protease, HK97 family	NA
UHGV-0103698_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0103698_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0103698_17	COG	COG3740	Phage head maturation protease	NA
UHGV-0103698_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0103698_18	PHROG	phrog_4936	transcriptional regulator	transcription regulation
UHGV-0103698_18	UniRef90	UniRef90_R6HCE3	Prophage antirepressor	NA
UHGV-0103698_18	eggNOG-mapper	457398.HMPREF0326_03045	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0103698_18	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0103698_18	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0103698_18	COG	COG3617	Prophage antirepressor	NA
UHGV-0103698_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0103698_19	UniRef90	UniRef90_UPI0009E8B747	phage portal protein	NA
UHGV-0103698_19	eggNOG-mapper	1414720.CBYM010000001_gene697	Phage portal protein, HK97 family	NA
UHGV-0103698_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0103698_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0103698_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0103698_19	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0103698_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0103698_20	UniRef90	UniRef90_UPI001F2E3C42	terminase large subunit	NA
UHGV-0103698_20	eggNOG-mapper	1399942.U3PBG5_9CAUD	Phage Terminase	NA
UHGV-0103698_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0103698_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0103698_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0103698_21	PHROG	phrog_13845	NA	unknown function
UHGV-0103698_21	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0103698_21	Structural annotation	PF05119, COG3747	NA	NA
UHGV-0103698_24	UniRef90	UniRef90_R6GRH6	HNH domain-containing protein	NA
UHGV-0103698_24	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-0103698_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0103698_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0103698_25	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0103698_25	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-0103698_25	Structural annotation	PF05263	NA	NA
UHGV-0103698_26	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0103698_26	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0103698_26	UniRef90	UniRef90_R6GS37	Phage antirepressor protein putative	NA
UHGV-0103698_26	eggNOG-mapper	394503.Ccel_2852	Phage antirepressor protein	NA
UHGV-0103698_26	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0103698_26	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0103698_26	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0103698_26	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0103698_27	Structural annotation	PF15591, MF_00667, NF000331	NA	NA
UHGV-0103698_28	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0103698_28	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0103698_28	UniRef90	UniRef90_A0A3D1LG85	DNA helicase	NA
UHGV-0103698_28	eggNOG-mapper	411471.SUBVAR_05076	Participates in initiation and elongation during chromosome replication	NA
UHGV-0103698_28	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0103698_28	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0103698_28	COG	COG0305	Replicative DNA helicase	NA
UHGV-0103698_28	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0103698_29	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0103698_29	UniRef90	UniRef90_UPI00124827DB	helix-turn-helix domain-containing protein	NA
UHGV-0103698_29	eggNOG-mapper	642492.Clole_1831	Helix-turn-helix domain	NA
UHGV-0103698_29	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0103698_29	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0103698_29	Structural annotation	PF13730, MF_01819, NF040939, COG5529	NA	NA
UHGV-0103698_31	UniRef90	UniRef90_R6GPZ4	HNH endonuclease domain protein	NA
UHGV-0103698_31	eggNOG-mapper	397290.C810_00568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0103698_31	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0103698_32	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0103698_32	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0103698_32	UniRef90	UniRef90_R6GFY9	Group II intron reverse transcriptase maturase	NA
UHGV-0103698_32	eggNOG-mapper	394503.Ccel_2751	Reverse transcriptase	NA
UHGV-0103698_32	PADLOC	PtuC2_00002	Reverse transcriptase	Septu
UHGV-0103698_32	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0103698_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0103698_33	eggNOG-mapper	1321782.HMPREF1986_00285	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0103698_33	PADLOC	PtuC2_00004	Reverse transcriptase	Septu
UHGV-0103698_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0103698_36	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0103698_36	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0103698_36	UniRef90	UniRef90_R6GPF0	RNA-directed DNA polymerase (Reverse transcriptase)	NA
UHGV-0103698_36	eggNOG-mapper	394503.Ccel_2751	Reverse transcriptase	NA
UHGV-0103698_36	PADLOC	PtuC2_00004	Reverse transcriptase	Septu
UHGV-0103698_36	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0103698_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0103698_36	NCBIFam	TIGR04416.1	group II intron reverse transcriptase/maturase	NA
UHGV-0103698_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0103698_36	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0103698_37	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0103698_37	UniRef90	UniRef90_UPI001D14FA8F	phage/plasmid primase, P4 family	NA
UHGV-0103698_37	eggNOG-mapper	1321778.HMPREF1982_02284	D5 N terminal like	NA
UHGV-0103698_37	Pfam	PF19263	NA	DUF5906
UHGV-0103698_37	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0103698_38	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0103698_38	UniRef90	UniRef90_R6HC20	Phage/plasmid primase P4 family C-terminal domain protein	NA
UHGV-0103698_38	eggNOG-mapper	1111454.HMPREF1250_2060	Phage plasmid primase, P4 family	NA
UHGV-0103698_38	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0103698_38	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0103698_39	UniRef90	UniRef90_R6GR50	HTH_17 domain-containing protein	NA
UHGV-0103698_39	eggNOG-mapper	1329516.JPST01000014_gene643	Helix-turn-helix domain	NA
UHGV-0103698_39	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0103698_39	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0103698_39	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0103698_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0103698_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103698_40	UniRef90	UniRef90_R6GH17	DNA-binding helix-turn-helix protein	NA
UHGV-0103698_40	eggNOG-mapper	1278311.AUAL01000004_gene367	sequence-specific DNA binding	NA
UHGV-0103698_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103698_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA