UHGV-0103785

Genome information

Genome length 33,778 bps

CDS count 53

Completeness 91.44% (high-quality)

geNomad score 0.9596

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103785
vOTU ID	vOTU-079724
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_201260
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9596
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.98
Jumbo phage	No

Genome content
Genome length	33,778 bps
GC content	37.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.34%
Average CDS length	585.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103785_1	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0103785_1	UniRef90	UniRef90_J9QD24	ASCH domain protein	NA
UHGV-0103785_1	eggNOG-mapper	1280689.AUJC01000003_gene948	NA	NA
UHGV-0103785_1	Pfam	PF12961	NA	DUF3850
UHGV-0103785_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0103785_1	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0103785_5	PHROG	phrog_7488	NA	unknown function
UHGV-0103785_5	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0103785_7	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0103785_7	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0103785_7	UniRef90	UniRef90_A0A6N9QF69	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0103785_7	eggNOG-mapper	1408823.AXUS01000047_gene2901	C-5 cytosine-specific DNA methylase	NA
UHGV-0103785_7	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0103785_7	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0103785_7	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0103785_7	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0103785_7	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0103785_8	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0103785_8	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0103785_8	UniRef90	UniRef90_A0A1I1YTW5	dCTP deaminase, dUMP-forming	NA
UHGV-0103785_8	eggNOG-mapper	596315.HMPREF0634_0855	Belongs to the dCTP deaminase family	NA
UHGV-0103785_8	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0103785_8	COG	COG0717	dCTP deaminase	NA
UHGV-0103785_9	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0103785_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103785_9	UniRef90	UniRef90_UPI0003638FC5	helix-turn-helix domain-containing protein	NA
UHGV-0103785_9	eggNOG-mapper	1120936.KB907213_gene4942	Helix-turn-helix domain	NA
UHGV-0103785_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103785_9	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0103785_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0103785_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103785_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0103785_12	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0103785_12	UniRef90	UniRef90_A0A7X5DCG3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0103785_12	eggNOG-mapper	1095750.HMPREF9970_1673	Endodeoxyribonuclease RusA	NA
UHGV-0103785_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0103785_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0103785_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0103785_13	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0103785_13	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0103785_13	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-0103785_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0103785_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0103785_13	Structural annotation	PF14297	NA	NA
UHGV-0103785_14	PHROG	phrog_2113	NA	unknown function
UHGV-0103785_14	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0103785_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0103785_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0103785_15	UniRef90	UniRef90_UPI0004AC739F	single-stranded DNA-binding protein	NA
UHGV-0103785_15	eggNOG-mapper	1121334.KB911069_gene1617	Single-stranded DNA-binding protein	NA
UHGV-0103785_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0103785_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0103785_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0103785_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0103785_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0103785_16	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0103785_16	UniRef90	UniRef90_R5XZW2	HNH domain-containing protein	NA
UHGV-0103785_16	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0103785_16	Pfam	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)	Paired_CXXCH_1
UHGV-0103785_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0103785_17	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0103785_17	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0103785_17	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0103785_18	PHROG	phrog_14970	NA	unknown function
UHGV-0103785_18	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0103785_18	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0103785_18	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0103785_18	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0103785_18	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0103785_19	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0103785_19	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-0103785_19	eggNOG-mapper	40522.A8ASN2_BPA50	Siphovirus Gp157	NA
UHGV-0103785_19	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0103785_19	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0103785_20	Structural annotation	PF21596	NA	NA
UHGV-0103785_25	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0103785_25	UniRef90	UniRef90_A0A2M7Z9S0	HTH cro/C1-type domain-containing protein	NA
UHGV-0103785_25	eggNOG-mapper	1120978.KB894087_gene408	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0103785_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103785_25	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0103785_26	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0103785_26	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0103785_26	UniRef90	UniRef90_A0A3E2U313	Repressor LexA	NA
UHGV-0103785_26	eggNOG-mapper	706434.HMPREF9429_00405	Peptidase S24-like	NA
UHGV-0103785_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103785_26	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0103785_26	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0103785_26	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0103785_27	UniRef90	UniRef90_UPI0003F5013B	NA	NA
UHGV-0103785_27	eggNOG-mapper	1280686.AUKE01000001_gene2110	NA	NA
UHGV-0103785_27	Pfam	PF16729	NA	DUF5067
UHGV-0103785_27	Structural annotation	PF16729, MF_00791, TIGR04087, COG2967	NA	NA
UHGV-0103785_28	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0103785_28	PHROG	phrog_95	integrase	integration and excision
UHGV-0103785_28	UniRef90	UniRef90_UPI001C63F9A1	recombinase family protein	NA
UHGV-0103785_28	eggNOG-mapper	645991.Sgly_0308	Resolvase, N terminal domain	NA
UHGV-0103785_28	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0103785_28	Pfam	PF07508	Recombinase	Recombinase
UHGV-0103785_28	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0103785_28	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0103785_28	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0103785_29	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0103785_29	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0103785_29	UniRef90	UniRef90_UPI00082EDE2B	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0103785_29	eggNOG-mapper	935948.KE386495_gene1163	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0103785_29	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0103785_29	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0103785_29	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0103785_30	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0103785_30	UniRef90	UniRef90_UPI00047B94D1	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0103785_30	eggNOG-mapper	411469.EUBHAL_00999	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0103785_30	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0103785_30	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0103785_34	eggNOG-mapper	1227268.HMPREF1552_00029	NA	NA
UHGV-0103785_35	PHROG	phrog_10390	NA	unknown function
UHGV-0103785_35	UniRef90	UniRef90_UPI0015C64639	NA	NA
UHGV-0103785_35	eggNOG-mapper	679192.HMPREF9013_1310	NA	NA
UHGV-0103785_35	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0103785_35	COG	COG3600	NA	NA
UHGV-0103785_35	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0103785_36	PHROG	phrog_1129	holin	lysis
UHGV-0103785_36	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-0103785_36	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0103785_36	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0103785_36	Structural annotation	PF16079	NA	NA
UHGV-0103785_38	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0103785_38	PHROG	phrog_435	endolysin	lysis
UHGV-0103785_38	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0103785_38	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0103785_38	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0103785_38	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0103785_38	Structural annotation	PF01520, PF08230, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0103785_40	PHROG	phrog_24267	NA	unknown function
UHGV-0103785_40	UniRef90	UniRef90_A0A412AXT4	NA	NA
UHGV-0103785_40	eggNOG-mapper	658088.HMPREF0987_01104	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0103785_40	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0103785_40	COG	COG4675	Phage tail collar domain	NA
UHGV-0103785_40	Structural annotation	PF10651, NF040788, COG2372	NA	NA
UHGV-0103785_41	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0103785_41	UniRef90	UniRef90_UPI001C1127BE	phage tail protein	NA
UHGV-0103785_41	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0103785_41	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0103785_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0103785_41	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0103785_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0103785_41	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0103785_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0103785_42	UniRef90	UniRef90_A0A110A7B6	Phage tail protein	NA
UHGV-0103785_42	eggNOG-mapper	272562.CA_C0062	tail component	NA
UHGV-0103785_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0103785_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0103785_43	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0103785_43	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0103785_43	UniRef90	UniRef90_UPI00129E2108	phage tail tape measure protein	NA
UHGV-0103785_43	eggNOG-mapper	411461.DORFOR_01175	phage tail tape measure protein	NA
UHGV-0103785_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0103785_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0103785_43	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0103785_43	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0103785_44	PHROG	phrog_2115	tail protein	tail
UHGV-0103785_44	eggNOG-mapper	411470.RUMGNA_02074	NA	NA
UHGV-0103785_44	Structural annotation	PF11836	NA	NA
UHGV-0103785_45	PHROG	phrog_88	major tail protein	tail
UHGV-0103785_45	UniRef90	UniRef90_A0A174CNN5	Phage major tail protein, phi13 family	NA
UHGV-0103785_45	eggNOG-mapper	1235793.C809_01925	phage major tail protein, phi13 family	NA
UHGV-0103785_45	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0103785_45	COG	COG5492	NA	NA
UHGV-0103785_45	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0103785_46	PHROG	phrog_78	tail terminator	connector
UHGV-0103785_46	UniRef90	UniRef90_UPI001C54EC97	NA	NA
UHGV-0103785_46	eggNOG-mapper	1195236.CTER_5107	NA	NA
UHGV-0103785_46	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0103785_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0103785_47	UniRef90	UniRef90_R5S8G2	HK97 gp10 family phage protein	NA
UHGV-0103785_47	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0103785_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0103785_47	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0103785_47	Structural annotation	TIGR01725	NA	NA
UHGV-0103785_48	PHROG	phrog_25	head closure Hc1	connector
UHGV-0103785_48	UniRef90	UniRef90_E7GJW6	Phage head-tail adaptor	NA
UHGV-0103785_48	eggNOG-mapper	742740.HMPREF9474_01210	Phage head-tail joining protein	NA
UHGV-0103785_48	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0103785_48	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0103785_48	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0103785_48	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0103785_49	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0103785_49	UniRef90	UniRef90_UPI000773A5A6	head-tail connector protein	NA
UHGV-0103785_49	eggNOG-mapper	536232.CLM_1660	Phage gp6-like head-tail connector protein	NA
UHGV-0103785_49	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0103785_49	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0103785_49	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0103785_50	PHROG	phrog_10	major head protein	head and packaging
UHGV-0103785_50	UniRef90	UniRef90_UPI000C76C68B	phage major capsid protein	NA
UHGV-0103785_50	eggNOG-mapper	536232.CLM_1659	Phage major capsid protein, HK97 family	NA
UHGV-0103785_50	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0103785_50	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0103785_50	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0103785_50	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0103785_51	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0103785_51	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0103785_51	UniRef90	UniRef90_R6FVQ7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0103785_51	eggNOG-mapper	1567013.A0A0A7RTN2_9CAUD	Clp protease	NA
UHGV-0103785_51	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0103785_51	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0103785_52	PHROG	phrog_12	portal protein	head and packaging
UHGV-0103785_52	UniRef90	UniRef90_A0A3F2ZQR1	Phage portal protein, HK97 family	NA
UHGV-0103785_52	eggNOG-mapper	536232.CLM_1657	Phage portal protein, HK97 family	NA
UHGV-0103785_52	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0103785_52	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0103785_52	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0103785_52	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0103785_53	PHROG	phrog_2699	terminase large subunit	head and packaging
UHGV-0103785_53	UniRef90	UniRef90_A0A496N7K1	Terminase large subunit (Fragment)	NA
UHGV-0103785_53	eggNOG-mapper	536232.CLM_1656	Terminase	NA
UHGV-0103785_53	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0103785_53	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA