UHGV-0103878

Genome information

Genome length 58,187 bps

CDS count 98

Completeness 99.90% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103878
vOTU ID	vOTU-061297
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_225633
BioSample	SAMEA3708607
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.59
Jumbo phage	No

Genome content
Genome length	58,187 bps
GC content	40.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	98
CDS density	86.18%
Average CDS length	516.80 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103878_1	KOfam	K14059	int; integrase	NA
UHGV-0103878_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0103878_1	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0103878_1	eggNOG-mapper	97139.C824_00125	Phage integrase family	NA
UHGV-0103878_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103878_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0103878_1	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0103878_2	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0103878_2	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0103878_2	UniRef90	UniRef90_UPI001C399578	Site-specific DNA-methyltransferase	NA
UHGV-0103878_2	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0103878_2	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0103878_2	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0103878_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0103878_2	COG	COG0863	DNA modification methylase	NA
UHGV-0103878_5	PHROG	phrog_20593	NA	unknown function
UHGV-0103878_7	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-0103878_7	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0103878_8	PHROG	phrog_8684	NA	unknown function
UHGV-0103878_8	UniRef90	UniRef90_A0A1Q6ETU5	YopX domain-containing protein	NA
UHGV-0103878_8	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0103878_8	Pfam	PF09643	YopX protein	YopX
UHGV-0103878_8	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0103878_10	eggNOG-mapper	397288.C806_00098	NA	NA
UHGV-0103878_11	PHROG	phrog_22292	NA	unknown function
UHGV-0103878_15	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0103878_15	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0103878_15	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0103878_15	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0103878_15	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0103878_15	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0103878_15	COG	COG0305	Replicative DNA helicase	NA
UHGV-0103878_15	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0103878_16	PHROG	phrog_11769	NA	unknown function
UHGV-0103878_16	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0103878_16	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0103878_16	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0103878_16	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0103878_16	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0103878_17	PHROG	phrog_19106	NA	unknown function
UHGV-0103878_17	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0103878_17	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0103878_17	Structural annotation	TIGR01453	NA	NA
UHGV-0103878_20	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0103878_20	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0103878_20	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0103878_20	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0103878_20	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0103878_20	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0103878_20	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0103878_21	UniRef90	UniRef90_R7JZ94	Excinuclease ABC C subunit domain protein	NA
UHGV-0103878_21	eggNOG-mapper	573061.Clocel_3554	GIY-YIG catalytic domain	NA
UHGV-0103878_21	Pfam	PF06467	MYM-type Zinc finger with FCS sequence motif	zf-FCS
UHGV-0103878_21	Structural annotation	PF19835, PF06467, MF_00773, TIGR01453, COG2075	NA	NA
UHGV-0103878_24	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0103878_24	UniRef90	UniRef90_UPI001904C527	recombinase RecT	NA
UHGV-0103878_24	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-0103878_24	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0103878_27	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0103878_28	PHROG	phrog_2600	NA	unknown function
UHGV-0103878_28	eggNOG-mapper	742740.HMPREF9474_03130	NA	NA
UHGV-0103878_29	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0103878_29	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0103878_29	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0103878_29	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0103878_29	Pfam	PF13476	AAA domain	AAA_23
UHGV-0103878_29	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0103878_29	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0103878_30	PHROG	phrog_26861	NA	unknown function
UHGV-0103878_30	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0103878_30	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0103878_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0103878_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0103878_30	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0103878_33	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0103878_33	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-0103878_33	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0103878_33	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0103878_33	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0103878_33	COG	COG3617	Prophage antirepressor	NA
UHGV-0103878_33	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0103878_38	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0103878_38	UniRef90	UniRef90_A0A173RD24	ORF6N domain	NA
UHGV-0103878_38	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-0103878_38	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0103878_38	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0103878_41	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0103878_41	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0103878_41	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0103878_41	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0103878_41	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0103878_41	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0103878_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0103878_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0103878_42	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0103878_42	Structural annotation	NF040910	NA	NA
UHGV-0103878_43	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0103878_44	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-0103878_45	PHROG	phrog_17196	kinase	other
UHGV-0103878_45	eggNOG-mapper	397290.C810_05240	NA	NA
UHGV-0103878_45	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0103878_46	PHROG	phrog_18190	NA	unknown function
UHGV-0103878_46	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0103878_46	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0103878_46	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0103878_46	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0103878_47	PHROG	phrog_1194	NA	unknown function
UHGV-0103878_47	Pfam	PF20458	NA	DUF6711
UHGV-0103878_47	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0103878_48	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0103878_48	UniRef90	UniRef90_UPI0009D7969F	transporter	NA
UHGV-0103878_48	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0103878_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0103878_48	COG	COG3617	Prophage antirepressor	NA
UHGV-0103878_48	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0103878_49	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0103878_49	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0103878_49	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0103878_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0103878_50	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0103878_50	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0103878_50	COG	COG1511	NA	NA
UHGV-0103878_50	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0103878_51	PHROG	phrog_14030	NA	unknown function
UHGV-0103878_51	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0103878_51	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0103878_51	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0103878_54	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0103878_54	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0103878_55	Structural annotation	PF05657	NA	NA
UHGV-0103878_56	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0103878_56	AcrCatalog	cluster_24841	NA	NA
UHGV-0103878_57	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0103878_58	PHROG	phrog_443	holin	lysis
UHGV-0103878_58	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0103878_58	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0103878_58	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0103878_58	Structural annotation	PF16945	NA	NA
UHGV-0103878_59	PHROG	phrog_4105	NA	unknown function
UHGV-0103878_59	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0103878_60	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0103878_61	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0103878_61	Structural annotation	PF21169	NA	NA
UHGV-0103878_62	PHROG	phrog_29	major head protein	head and packaging
UHGV-0103878_62	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0103878_62	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0103878_62	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0103878_62	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0103878_63	PHROG	phrog_909	major head protein	head and packaging
UHGV-0103878_63	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0103878_64	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0103878_65	PHROG	phrog_64	portal protein	head and packaging
UHGV-0103878_65	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0103878_65	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0103878_65	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0103878_65	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0103878_66	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0103878_66	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0103878_66	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0103878_66	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0103878_66	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0103878_67	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0103878_67	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0103878_67	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0103878_67	COG	COG5410	NA	NA
UHGV-0103878_67	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0103878_68	PHROG	phrog_14301	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0103878_68	UniRef90	UniRef90_UPI001BCD9F22	NA	NA
UHGV-0103878_68	eggNOG-mapper	1453505.JASY01000021_gene52	NA	NA
UHGV-0103878_68	Pfam	PF17720	NA	DUF5565
UHGV-0103878_68	Structural annotation	PF17720	NA	NA
UHGV-0103878_71	Structural annotation	PF04466	NA	NA
UHGV-0103878_74	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0103878_75	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0103878_75	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0103878_75	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0103878_75	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0103878_75	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0103878_75	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0103878_76	Structural annotation	PF10750, MF_00508, TIGR00166	NA	NA
UHGV-0103878_77	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0103878_79	Structural annotation	PF12993	NA	NA
UHGV-0103878_80	UniRef90	UniRef90_A0A2N5NVL9	Transcriptional regulator	NA
UHGV-0103878_80	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0103878_80	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0103878_82	PHROG	phrog_31631	NA	unknown function
UHGV-0103878_85	eggNOG-mapper	397290.C810_01348	NA	NA
UHGV-0103878_86	Structural annotation	PF10694, MF_00403_B, NF007348, COG5569	NA	NA
UHGV-0103878_89	PHROG	phrog_1233	NA	unknown function
UHGV-0103878_89	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0103878_90	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0103878_91	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0103878_91	UniRef90	UniRef90_A0A0H3N242	Phage-related protein	NA
UHGV-0103878_91	eggNOG-mapper	673376.F2VHW3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0103878_92	UniRef90	UniRef90_UPI001F10428A	NA	NA
UHGV-0103878_92	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0103878_92	Structural annotation	PF19891, NF041793, COG4877	NA	NA
UHGV-0103878_93	PHROG	phrog_20016	NA	unknown function
UHGV-0103878_93	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0103878_93	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0103878_93	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0103878_94	PHROG	phrog_16490	NA	unknown function
UHGV-0103878_94	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0103878_95	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0103878_96	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0103878_98	eggNOG-mapper	471875.RUMLAC_00713	NA	NA