UHGV-0103884

Genome information

Genome length 29,581 bps

CDS count 45

Completeness 94.11% (high-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103884
vOTU ID	vOTU-067291
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_223440
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.11% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.77
Jumbo phage	No

Genome content
Genome length	29,581 bps
GC content	57.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.67%
Average CDS length	600.93 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103884_1	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0103884_2	PHROG	phrog_1887	tail protein	tail
UHGV-0103884_2	eggNOG-mapper	997296.PB1_16154	NA	NA
UHGV-0103884_2	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0103884_3	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0103884_3	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0103884_4	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0103884_4	UniRef90	UniRef90_A0A1M6DPG2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0103884_4	eggNOG-mapper	1123263.AUKY01000046_gene477	Phage tail tape measure protein, TP901 family	NA
UHGV-0103884_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0103884_4	Structural annotation	COG5280	NA	NA
UHGV-0103884_5	PHROG	phrog_3033	NA	unknown function
UHGV-0103884_5	eggNOG-mapper	411489.CLOL250_01719	NA	NA
UHGV-0103884_6	PHROG	phrog_709	NA	unknown function
UHGV-0103884_6	eggNOG-mapper	1410670.JHXF01000015_gene2298	NA	NA
UHGV-0103884_6	Structural annotation	PF11836	NA	NA
UHGV-0103884_7	PHROG	phrog_88	major tail protein	tail
UHGV-0103884_7	UniRef90	UniRef90_A0A1Y3R915	Phage tail protein	NA
UHGV-0103884_7	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0103884_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0103884_7	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0103884_8	PHROG	phrog_78	tail terminator	connector
UHGV-0103884_8	eggNOG-mapper	397288.C806_00766	NA	NA
UHGV-0103884_8	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0103884_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0103884_9	UniRef90	UniRef90_UPI0019581735	HK97 gp10 family phage protein	NA
UHGV-0103884_9	eggNOG-mapper	663278.Ethha_1841	NA	NA
UHGV-0103884_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0103884_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0103884_10	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0103884_10	UniRef90	UniRef90_U2R2J1	Putative phage head-tail adaptor	NA
UHGV-0103884_10	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0103884_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0103884_11	PHROG	phrog_2550	NA	unknown function
UHGV-0103884_11	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0103884_11	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0103884_11	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0103884_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0103884_12	UniRef90	UniRef90_UPI001E346EE7	phage major capsid protein	NA
UHGV-0103884_12	eggNOG-mapper	1033744.CAEL01000029_gene1282	phage major capsid protein, HK97 family	NA
UHGV-0103884_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0103884_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0103884_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0103884_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0103884_13	KOfam	K06904	NA	NA
UHGV-0103884_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0103884_13	UniRef90	UniRef90_G2G0W3	Phage prohead protease, HK97 family	NA
UHGV-0103884_13	eggNOG-mapper	913865.DOT_5634	Phage prohead protease, HK97 family	NA
UHGV-0103884_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0103884_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0103884_13	COG	COG3740	Phage head maturation protease	NA
UHGV-0103884_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0103884_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0103884_14	UniRef90	UniRef90_A0A419G212	Phage portal protein	NA
UHGV-0103884_14	eggNOG-mapper	913865.DOT_5635	Phage portal protein, HK97 family	NA
UHGV-0103884_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0103884_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0103884_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0103884_14	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0103884_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0103884_15	UniRef90	UniRef90_A0A7C6PV87	Terminase large subunit	NA
UHGV-0103884_15	eggNOG-mapper	1121428.DESHY_20134___1	Phage Terminase	NA
UHGV-0103884_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0103884_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0103884_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0103884_15	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0103884_16	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0103884_16	UniRef90	UniRef90_UPI0008719E65	P27 family phage terminase small subunit	NA
UHGV-0103884_16	eggNOG-mapper	596315.HMPREF0634_0388	Phage terminase, small subunit	NA
UHGV-0103884_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0103884_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0103884_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0103884_17	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0103884_17	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0103884_17	Pfam	PF07374	NA	DUF1492
UHGV-0103884_17	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0103884_21	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0103884_21	UniRef90	UniRef90_A0A7V6TKR0	NA	NA
UHGV-0103884_21	eggNOG-mapper	278963.ATWD01000001_gene4484	NA	NA
UHGV-0103884_21	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0103884_21	Structural annotation	PF18909	NA	NA
UHGV-0103884_24	PHROG	phrog_22543	NA	unknown function
UHGV-0103884_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0103884_25	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0103884_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0103884_25	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0103884_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0103884_26	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0103884_26	UniRef90	UniRef90_A0A7C6NZ37	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0103884_26	eggNOG-mapper	1304866.K413DRAFT_1208	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0103884_26	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0103884_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0103884_26	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0103884_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0103884_26	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0103884_28	PHROG	phrog_824	NA	unknown function
UHGV-0103884_28	UniRef90	UniRef90_UPI00164D35CF	VRR-NUC domain-containing protein	NA
UHGV-0103884_28	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0103884_28	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0103884_28	Structural annotation	PF08774	NA	NA
UHGV-0103884_29	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0103884_29	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0103884_29	UniRef90	UniRef90_UPI001C63D655	DEAD/DEAH box helicase	NA
UHGV-0103884_29	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0103884_29	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0103884_29	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0103884_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0103884_29	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0103884_29	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0103884_31	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0103884_31	UniRef90	UniRef90_UPI000C77A760	NA	NA
UHGV-0103884_31	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0103884_31	Pfam	PF06048	NA	DUF927
UHGV-0103884_31	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0103884_31	COG	COG5519	NA	NA
UHGV-0103884_31	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0103884_32	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0103884_32	PHROG	phrog_11992	NA	unknown function
UHGV-0103884_32	UniRef90	UniRef90_UPI0013ED294C	CHC2 zinc finger domain-containing protein	NA
UHGV-0103884_32	eggNOG-mapper	1007096.BAGW01000023_gene150	CHC2 zinc finger	NA
UHGV-0103884_32	PADLOC	drt-cluster192	DRT	DRT
UHGV-0103884_32	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0103884_32	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0103884_32	Structural annotation	PF01807	NA	NA
UHGV-0103884_33	PHROG	phrog_18107	NA	unknown function
UHGV-0103884_33	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0103884_33	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-0103884_33	Pfam	PF05037	NA	DUF669
UHGV-0103884_33	Structural annotation	PF05037	NA	NA
UHGV-0103884_34	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0103884_34	UniRef90	UniRef90_A0A316RHU5	ATP-binding protein	NA
UHGV-0103884_34	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0103884_34	Pfam	PF13479	AAA domain	AAA_24
UHGV-0103884_34	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0103884_38	PHROG	phrog_2113	NA	unknown function
UHGV-0103884_38	UniRef90	UniRef90_UPI000835921F	helix-turn-helix domain-containing protein	NA
UHGV-0103884_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0103884_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103884_42	UniRef90	UniRef90_A0A1Y4HX66	HTH cro/C1-type domain-containing protein	NA
UHGV-0103884_42	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0103884_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0103884_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0103884_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0103884_44	PHROG	phrog_17982	NA	unknown function
UHGV-0103884_44	UniRef90	UniRef90_A0A1C5VGW2	NA	NA
UHGV-0103884_44	eggNOG-mapper	1151292.QEW_4527	NA	NA
UHGV-0103884_44	Pfam	PF14020	NA	DUF4236
UHGV-0103884_45	KOfam	K14059	int; integrase	NA
UHGV-0103884_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0103884_45	UniRef90	UniRef90_UPI001F1A0D47	site-specific integrase	NA
UHGV-0103884_45	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0103884_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103884_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0103884_45	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA