UHGV-0103893

Genome information

vOTU vOTU-042048

Genome length 44,545 bps

CDS count 74

Completeness 84.70% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0103893
vOTU ID	vOTU-042048
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_203607
BioSample	SAMEA3449246
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.97
Jumbo phage	No

Genome content
Genome length	44,545 bps
GC content	40.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	91.71%
Average CDS length	555.32 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0103893_1	KOfam	K14059	int; integrase	NA
UHGV-0103893_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0103893_1	UniRef90	UniRef90_A0A414P9D4	Site-specific integrase	NA
UHGV-0103893_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0103893_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0103893_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0103893_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0103893_4	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0103893_4	PHROG	phrog_13700	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0103893_4	UniRef90	UniRef90_A0A373MXR4	Ftsk_gamma domain-containing protein	NA
UHGV-0103893_4	eggNOG-mapper	1232452.BAIB02000006_gene1097	Ftsk_gamma	NA
UHGV-0103893_4	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0103893_4	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0103893_4	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0103893_5	PHROG	phrog_87	metallo-protease	other
UHGV-0103893_5	UniRef90	UniRef90_A0A373MWI1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0103893_5	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0103893_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0103893_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0103893_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0103893_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0103893_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0103893_6	UniRef90	UniRef90_R6SHW8	Helix-turn-helix	NA
UHGV-0103893_6	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0103893_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0103893_6	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0103893_6	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0103893_7	UniRef90	UniRef90_R6SPV6	DNA binding domain excisionase family	NA
UHGV-0103893_7	eggNOG-mapper	1449050.JNLE01000005_gene3960	Helix-turn-helix domain	NA
UHGV-0103893_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0103893_7	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0103893_7	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0103893_10	Structural annotation	PF20037, COG3212	NA	NA
UHGV-0103893_15	PHROG	phrog_674	NA	unknown function
UHGV-0103893_15	UniRef90	UniRef90_A0A373MX71	NA	NA
UHGV-0103893_15	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0103893_15	Pfam	PF07083	NA	DUF1351
UHGV-0103893_15	Structural annotation	PF07083	NA	NA
UHGV-0103893_16	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0103893_16	UniRef90	UniRef90_UPI001EDDFED5	ERF family protein	NA
UHGV-0103893_16	eggNOG-mapper	1298920.KI911353_gene4870	ERF superfamily	NA
UHGV-0103893_16	Pfam	PF04404	ERF superfamily	ERF
UHGV-0103893_16	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0103893_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0103893_17	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0103893_17	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0103893_18	PHROG	phrog_2113	NA	unknown function
UHGV-0103893_18	UniRef90	UniRef90_A0A357NGS2	HTH_11 domain-containing protein	NA
UHGV-0103893_18	eggNOG-mapper	365659.smi_2008	NA	NA
UHGV-0103893_18	Structural annotation	PF21715	NA	NA
UHGV-0103893_19	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0103893_19	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0103893_19	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0103893_20	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0103893_20	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0103893_20	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0103893_20	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0103893_21	Structural annotation	PF09889, MF_00649, NF001638, COG4068	NA	NA
UHGV-0103893_22	UniRef90	UniRef90_A0A373MX33	NA	NA
UHGV-0103893_22	Pfam	PF04448	NA	DUF551
UHGV-0103893_22	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0103893_23	PHROG	phrog_17705	NA	unknown function
UHGV-0103893_25	UniRef90	UniRef90_A0A415H5C1	ASCH domain-containing protein	NA
UHGV-0103893_25	eggNOG-mapper	397290.C810_00411	ASCH domain	NA
UHGV-0103893_25	Pfam	PF04266	ASCH domain	ASCH
UHGV-0103893_25	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0103893_25	Structural annotation	PF08819, MF_00684, NF003443, COG4933	NA	NA
UHGV-0103893_26	PHROG	phrog_31560	NA	unknown function
UHGV-0103893_26	eggNOG-mapper	585501.HMPREF6123_0413	NA	NA
UHGV-0103893_28	Structural annotation	PF01917, NF006325	NA	NA
UHGV-0103893_30	eggNOG-mapper	568816.Acin_1246	NA	NA
UHGV-0103893_32	PHROG	phrog_9822	NA	unknown function
UHGV-0103893_35	PHROG	phrog_25456	NA	unknown function
UHGV-0103893_37	eggNOG-mapper	887325.HMPREF0381_0090	NA	NA
UHGV-0103893_38	PHROG	phrog_924	NA	unknown function
UHGV-0103893_38	UniRef90	UniRef90_A0A373MXP0	NA	NA
UHGV-0103893_38	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0103893_38	Pfam	PF04448	NA	DUF551
UHGV-0103893_39	PHROG	phrog_20593	NA	unknown function
UHGV-0103893_39	eggNOG-mapper	483218.BACPEC_01161	NA	NA
UHGV-0103893_40	PHROG	phrog_22292	NA	unknown function
UHGV-0103893_41	PHROG	phrog_8684	NA	unknown function
UHGV-0103893_41	UniRef90	UniRef90_A0A373MXN9	YopX domain-containing protein	NA
UHGV-0103893_41	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0103893_41	Pfam	PF09643	YopX protein	YopX
UHGV-0103893_41	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0103893_44	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0103893_45	Structural annotation	PF17224, COG3354	NA	NA
UHGV-0103893_46	PHROG	phrog_8680	NA	unknown function
UHGV-0103893_46	UniRef90	UniRef90_A0A373MX42	NA	NA
UHGV-0103893_46	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0103893_46	Pfam	PF14386	NA	DUF4417
UHGV-0103893_46	Structural annotation	PF14386	NA	NA
UHGV-0103893_48	PHROG	phrog_33130	NA	unknown function
UHGV-0103893_48	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0103893_49	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0103893_49	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0103893_49	UniRef90	UniRef90_A0A373MWB9	Terminase small subunit	NA
UHGV-0103893_49	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-0103893_49	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0103893_49	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0103893_49	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0103893_50	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0103893_50	PHROG	phrog_10250	NA	unknown function
UHGV-0103893_50	UniRef90	UniRef90_A0A373MY72	PBSX family phage terminase large subunit	NA
UHGV-0103893_50	eggNOG-mapper	397290.C810_05187	Phage terminase large subunit	NA
UHGV-0103893_50	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0103893_50	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0103893_50	COG	COG1783	Phage terminase large subunit	NA
UHGV-0103893_50	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0103893_51	PHROG	phrog_533	portal protein	head and packaging
UHGV-0103893_51	UniRef90	UniRef90_A0A173R9C0	Phage portal protein, putative, A118 family	NA
UHGV-0103893_51	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0103893_51	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0103893_52	PHROG	phrog_1233	NA	unknown function
UHGV-0103893_52	eggNOG-mapper	411490.ANACAC_00786	NA	NA
UHGV-0103893_52	Structural annotation	PF13058	NA	NA
UHGV-0103893_53	PHROG	phrog_1048	NA	unknown function
UHGV-0103893_53	UniRef90	UniRef90_A0A373MX10	NA	NA
UHGV-0103893_53	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0103893_53	Pfam	PF11195	NA	DUF2829
UHGV-0103893_53	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0103893_53	Structural annotation	PF11195	NA	NA
UHGV-0103893_54	PHROG	phrog_2428	NA	unknown function
UHGV-0103893_54	UniRef90	UniRef90_A0A396QA65	ABC transporter ATPase	NA
UHGV-0103893_54	eggNOG-mapper	632245.CLP_1645	NA	NA
UHGV-0103893_54	dbAPIS	APIS024	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	NA
UHGV-0103893_56	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0103893_56	UniRef90	UniRef90_A0A373MXM0	Phage capsid protein	NA
UHGV-0103893_56	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0103893_56	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0103893_56	COG	COG2369	NA	NA
UHGV-0103893_56	Structural annotation	PF06152	NA	NA
UHGV-0103893_57	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0103893_57	UniRef90	UniRef90_UPI001C1258D3	phage scaffolding protein	NA
UHGV-0103893_57	eggNOG-mapper	397290.C810_05223	Phage minor structural protein GP20	NA
UHGV-0103893_57	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0103893_57	Structural annotation	PF06810	NA	NA
UHGV-0103893_58	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0103893_58	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0103893_60	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0103893_60	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0103893_62	PHROG	phrog_3366	NA	unknown function
UHGV-0103893_62	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0103893_62	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0103893_63	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0103893_63	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0103893_63	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0103893_63	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0103893_63	Structural annotation	PF11114	NA	NA
UHGV-0103893_64	PHROG	phrog_3266	tail completion	connector
UHGV-0103893_64	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0103893_64	Structural annotation	PF12691	NA	NA
UHGV-0103893_65	PHROG	phrog_3099	NA	unknown function
UHGV-0103893_65	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0103893_65	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0103893_66	PHROG	phrog_11299	NA	unknown function
UHGV-0103893_66	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0103893_66	Structural annotation	PF10666	NA	NA
UHGV-0103893_67	PHROG	phrog_706	NA	unknown function
UHGV-0103893_67	UniRef90	UniRef90_UPI00156F9D1C	Gp15 family bacteriophage protein	NA
UHGV-0103893_67	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0103893_67	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0103893_67	Structural annotation	PF06854	NA	NA
UHGV-0103893_68	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0103893_68	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0103893_68	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0103893_68	COG	COG1511	NA	NA
UHGV-0103893_69	PHROG	phrog_1194	NA	unknown function
UHGV-0103893_69	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0103893_70	PHROG	phrog_6616	tail protein	tail
UHGV-0103893_70	UniRef90	UniRef90_UPI0015714EA8	tail fiber domain-containing protein	NA
UHGV-0103893_70	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0103893_70	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0103893_72	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0103893_73	eggNOG-mapper	1111121.HMPREF1247_1244	NA	NA
UHGV-0103893_74	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA