UHGV-0104015

Genome information

Genome length 36,576 bps

CDS count 57

Completeness 86.00% (medium-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104015
vOTU ID	vOTU-023690
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_239147
BioSample	SAMEA3708708
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	86.56
Jumbo phage	No

Genome content
Genome length	36,576 bps
GC content	33.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.65%
Average CDS length	603.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104015_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0104015_1	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0104015_1	UniRef90	UniRef90_UPI000E48811F	antA/AntB antirepressor family protein	NA
UHGV-0104015_1	eggNOG-mapper	1230342.CTM_17202	Phage antirepressor protein KilAC domain	NA
UHGV-0104015_1	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0104015_1	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0104015_1	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0104015_2	UniRef90	UniRef90_H3K595	Excisionase family DNA binding domain-containing protein	NA
UHGV-0104015_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0104015_6	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0104015_6	UniRef90	UniRef90_UPI001C3A3B51	Siphovirus Gp157 family protein	NA
UHGV-0104015_6	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0104015_6	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0104015_6	Structural annotation	PF05565	NA	NA
UHGV-0104015_7	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0104015_7	UniRef90	UniRef90_A0A412CGN6	ATP-binding protein	NA
UHGV-0104015_7	eggNOG-mapper	1200557.JHWV01000001_gene293	AAA domain	NA
UHGV-0104015_7	Pfam	PF13479	AAA domain	AAA_24
UHGV-0104015_7	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0104015_8	PHROG	phrog_18107	NA	unknown function
UHGV-0104015_8	UniRef90	UniRef90_A0A412CGY7	NA	NA
UHGV-0104015_8	eggNOG-mapper	927704.SELR_18470	NA	NA
UHGV-0104015_8	Pfam	PF05037	NA	DUF669
UHGV-0104015_8	Structural annotation	PF05037	NA	NA
UHGV-0104015_9	PHROG	phrog_398	NA	unknown function
UHGV-0104015_9	UniRef90	UniRef90_A0A412CGR0	NA	NA
UHGV-0104015_9	eggNOG-mapper	585503.HMPREF7545_1716	Putative HNHc nuclease	NA
UHGV-0104015_9	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0104015_9	Structural annotation	PF16784	NA	NA
UHGV-0104015_10	PHROG	phrog_9403	NA	unknown function
UHGV-0104015_12	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0104015_12	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0104015_12	UniRef90	UniRef90_A0A1H8EJI9	DNA replication protein DnaC	NA
UHGV-0104015_12	eggNOG-mapper	546271.Selsp_1349	Primosomal protein DnaI	NA
UHGV-0104015_12	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0104015_12	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0104015_12	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0104015_14	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0104015_14	UniRef90	UniRef90_UPI001B141BA5	Rha family transcriptional regulator	NA
UHGV-0104015_14	eggNOG-mapper	665959.HMPREF1013_00872	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0104015_14	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0104015_14	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0104015_14	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0104015_14	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0104015_15	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104015_15	UniRef90	UniRef90_A0A412CG73	NA	NA
UHGV-0104015_15	eggNOG-mapper	169963.lmo2306	NA	NA
UHGV-0104015_15	Pfam	PF06356	NA	DUF1064
UHGV-0104015_16	PHROG	phrog_98	NA	unknown function
UHGV-0104015_16	UniRef90	UniRef90_UPI001D06D2C9	YopX family protein	NA
UHGV-0104015_16	eggNOG-mapper	1449126.JQKL01000024_gene2352	YopX protein	NA
UHGV-0104015_16	Pfam	PF09643	YopX protein	YopX
UHGV-0104015_16	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0104015_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0104015_17	UniRef90	UniRef90_UPI001D0851CD	helix-turn-helix domain-containing protein	NA
UHGV-0104015_17	eggNOG-mapper	1122217.KB899619_gene1467	Helix-turn-helix XRE-family like proteins	NA
UHGV-0104015_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104015_17	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0104015_17	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0104015_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104015_22	UniRef90	UniRef90_UPI00195D58A8	NA	NA
UHGV-0104015_22	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0104015_23	eggNOG-mapper	888060.HMPREF9081_1741	NA	NA
UHGV-0104015_25	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0104015_25	UniRef90	UniRef90_UPI00195AD3A9	phage terminase small subunit	NA
UHGV-0104015_25	eggNOG-mapper	1232428.CAVO010000021_gene808	DNA packaging	NA
UHGV-0104015_25	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0104015_25	COG	COG5484	NA	NA
UHGV-0104015_25	Structural annotation	PF02796, NF040601, COG5484	NA	NA
UHGV-0104015_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104015_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0104015_26	UniRef90	UniRef90_H3K5B0	PBSX family phage terminase, large subunit	NA
UHGV-0104015_26	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0104015_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0104015_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0104015_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0104015_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104015_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0104015_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0104015_27	UniRef90	UniRef90_UPI001CD66E01	phage portal protein	NA
UHGV-0104015_27	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0104015_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0104015_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0104015_28	PHROG	phrog_29127	NA	unknown function
UHGV-0104015_28	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-0104015_29	KOfam	K24218	C1QTNF7; complement C1q and tumor necrosis factor-related protein 7	NA
UHGV-0104015_29	PHROG	phrog_26303	NA	unknown function
UHGV-0104015_29	UniRef90	UniRef90_UPI00195CAEE8	collagen-like protein	NA
UHGV-0104015_29	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0104015_29	COG	COG5295	Autotransporter adhesin	NA
UHGV-0104015_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0104015_30	UniRef90	UniRef90_A0A378NUD8	Phage minor structural protein GP20	NA
UHGV-0104015_30	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-0104015_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0104015_30	Structural annotation	PF06810	NA	NA
UHGV-0104015_31	PHROG	phrog_247	major head protein	head and packaging
UHGV-0104015_31	UniRef90	UniRef90_D9R921	Phage coat protein	NA
UHGV-0104015_31	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0104015_31	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0104015_31	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0104015_32	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0104015_32	UniRef90	UniRef90_H3K5B6	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0104015_32	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0104015_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0104015_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0104015_32	COG	COG2369	NA	NA
UHGV-0104015_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0104015_35	PHROG	phrog_3202	NA	unknown function
UHGV-0104015_35	UniRef90	UniRef90_A0A7X1ZI74	YjzC family protein	NA
UHGV-0104015_35	eggNOG-mapper	643473.KB235930_gene3687	NA	NA
UHGV-0104015_36	eggNOG-mapper	1009370.ALO_12391	NA	NA
UHGV-0104015_36	Structural annotation	PF10263	NA	NA
UHGV-0104015_37	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0104015_37	eggNOG-mapper	1123250.KB908414_gene2106	NA	NA
UHGV-0104015_38	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0104015_38	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0104015_38	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0104015_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0104015_39	UniRef90	UniRef90_UPI001D002B4E	HK97 gp10 family phage protein	NA
UHGV-0104015_39	eggNOG-mapper	1123250.KB908414_gene2108	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0104015_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0104015_39	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0104015_40	PHROG	phrog_525	NA	unknown function
UHGV-0104015_40	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-0104015_40	Pfam	PF20765	NA	DUF6838
UHGV-0104015_40	Structural annotation	PF20765	NA	NA
UHGV-0104015_41	PHROG	phrog_1480	tail sheath	tail
UHGV-0104015_41	UniRef90	UniRef90_H3K5C1	Phage_sheath_1C domain-containing protein	NA
UHGV-0104015_41	eggNOG-mapper	1123250.KB908414_gene2110	Phage tail sheath C-terminal domain	NA
UHGV-0104015_41	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0104015_41	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0104015_41	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0104015_42	PHROG	phrog_365	tail protein	tail
UHGV-0104015_42	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-0104015_42	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0104015_42	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0104015_42	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0104015_43	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0104015_43	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0104015_43	eggNOG-mapper	568816.Acin_1376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0104015_43	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0104015_43	Structural annotation	PF08890	NA	NA
UHGV-0104015_44	PHROG	phrog_16692	NA	unknown function
UHGV-0104015_44	UniRef90	UniRef90_H3K5C4	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0104015_44	eggNOG-mapper	1273103.NM10_01024	Phage-related minor tail protein	NA
UHGV-0104015_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0104015_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0104015_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0104015_44	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0104015_45	PHROG	phrog_380	endolysin	lysis
UHGV-0104015_45	UniRef90	UniRef90_UPI001CF423A1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0104015_45	eggNOG-mapper	1123250.KB908414_gene2114	LysM domain	NA
UHGV-0104015_45	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0104015_45	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0104015_46	PHROG	phrog_400	tail protein	tail
UHGV-0104015_46	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0104015_46	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0104015_46	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0104015_46	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0104015_47	PHROG	phrog_579	NA	unknown function
UHGV-0104015_47	UniRef90	UniRef90_UPI001DAA9C69	NA	NA
UHGV-0104015_47	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-0104015_47	Pfam	PF10844	NA	DUF2577
UHGV-0104015_47	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0104015_48	PHROG	phrog_120	baseplate protein	tail
UHGV-0104015_48	UniRef90	UniRef90_UPI0014314BBF	NA	NA
UHGV-0104015_48	eggNOG-mapper	1273103.NM10_01004	NA	NA
UHGV-0104015_48	Pfam	PF10934	NA	DUF2634
UHGV-0104015_48	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0104015_49	PHROG	phrog_6	baseplate protein	tail
UHGV-0104015_49	UniRef90	UniRef90_H3K5D0	Baseplate_J domain-containing protein	NA
UHGV-0104015_49	eggNOG-mapper	883156.HMPREF9282_00965	Baseplate J-like protein	NA
UHGV-0104015_49	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0104015_49	COG	COG3299	NA	NA
UHGV-0104015_49	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0104015_50	PHROG	phrog_521	tail protein	tail
UHGV-0104015_50	UniRef90	UniRef90_UPI0019596FF9	NA	NA
UHGV-0104015_50	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-0104015_50	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0104015_50	COG	COG3778	NA	NA
UHGV-0104015_50	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0104015_51	eggNOG-mapper	1122918.KB907250_gene3597	Phage tail-collar fibre protein	NA
UHGV-0104015_51	Structural annotation	PF12571	NA	NA
UHGV-0104015_52	PHROG	phrog_18608	NA	unknown function
UHGV-0104015_52	eggNOG-mapper	1122917.KB899673_gene660	NA	NA
UHGV-0104015_53	eggNOG-mapper	1200557.JHWV01000001_gene254	NA	NA
UHGV-0104015_55	KOfam	K14059	int; integrase	NA
UHGV-0104015_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0104015_55	UniRef90	UniRef90_H3K6Q3	Core-binding (CB) domain-containing protein (Fragment)	NA
UHGV-0104015_55	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0104015_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104015_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104015_55	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0104015_56	PHROG	phrog_199	holin	lysis
UHGV-0104015_56	UniRef90	UniRef90_UPI000E3F5814	phage holin family protein	NA
UHGV-0104015_56	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-0104015_56	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0104015_56	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0104015_56	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0104015_56	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0104015_57	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0104015_57	PHROG	phrog_435	endolysin	lysis
UHGV-0104015_57	UniRef90	UniRef90_H3K6Q0	MurNAc-LAA domain-containing protein	NA
UHGV-0104015_57	eggNOG-mapper	1401067.HMPREF0872_07855	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0104015_57	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0104015_57	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0104015_57	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA