UHGV-0104026

Genome information

Genome length 37,641 bps

CDS count 36

Completeness 55.94% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104026
vOTU ID	vOTU-033480
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245185
BioSample	SAMEA3708848
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.28
Jumbo phage	No

Genome content
Genome length	37,641 bps
GC content	34.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	93.65%
Average CDS length	981.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104026_2	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104026_2	UniRef90	UniRef90_UPI001C27770B	Holliday junction resolvase RecU	NA
UHGV-0104026_2	eggNOG-mapper	871584.D9ZNH9_9CAUD	Recombination protein U	NA
UHGV-0104026_3	KOfam	K07464	cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]	NA
UHGV-0104026_3	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0104026_3	UniRef90	UniRef90_E7DN75	RecB	NA
UHGV-0104026_3	eggNOG-mapper	871584.D9ZNH8_9CAUD	nuclease activity	NA
UHGV-0104026_3	Structural annotation	PF10926, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0104026_4	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0104026_4	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0104026_4	UniRef90	UniRef90_E7DN74	DnaN	NA
UHGV-0104026_4	eggNOG-mapper	59241.E7DN74_BPDP1	3'-5' exonuclease activity	NA
UHGV-0104026_4	Structural annotation	PF00712, PF02768, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0104026_5	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0104026_5	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0104026_5	UniRef90	UniRef90_E7DND5	DNA polymerase	NA
UHGV-0104026_5	eggNOG-mapper	59241.E7DND5_BPDP1	DNA polymerase family A	NA
UHGV-0104026_5	PADLOC	drt-cluster58	DRT	DRT
UHGV-0104026_5	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0104026_5	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0104026_5	Structural annotation	PF00476, PF01612, MF_04101, NF004397, COG0749	NA	NA
UHGV-0104026_6	PHROG	phrog_14578	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0104026_6	UniRef90	UniRef90_A0A1U9WRB4	Single stranded DNA binding protein	NA
UHGV-0104026_6	eggNOG-mapper	59241.E7DND4_BPDP1	NA	NA
UHGV-0104026_6	Structural annotation	PF08804, MF_04152	NA	NA
UHGV-0104026_7	KOfam	K00525	E1.17.4.1A, nrdA, nrdE; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]	NA
UHGV-0104026_7	PHROG	phrog_84	ribonucleoside-diphosphate reductase large subunit	DNA, RNA and nucleotide metabolism
UHGV-0104026_7	UniRef90	UniRef90_A0A7G9G9I7	Vitamin B12-dependent ribonucleotide reductase	NA
UHGV-0104026_7	eggNOG-mapper	478749.BRYFOR_07431	Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen	NA
UHGV-0104026_7	Pfam	PF02867	Ribonucleotide reductase, barrel domain	Ribonuc_red_lgC
UHGV-0104026_7	NCBIFam	TIGR02504.1	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	NA
UHGV-0104026_7	COG	COG0209	Ribonucleotide reductase alpha subunit	NA
UHGV-0104026_7	Structural annotation	PF02867, MF_04026, NF006417, COG0209	NA	NA
UHGV-0104026_9	Structural annotation	PF13404, PF04542, MF_00959, TIGR02859, COG1595	NA	NA
UHGV-0104026_10	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0104026_10	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0104026_10	UniRef90	UniRef90_E7DND2	DnaG	NA
UHGV-0104026_10	eggNOG-mapper	59241.E7DND2_BPDP1	Toprim-like	NA
UHGV-0104026_10	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0104026_10	Structural annotation	PF13155, PF01807, PF08275, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0104026_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0104026_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0104026_11	UniRef90	UniRef90_D9ZNG4	Putative replicative DNA helicase	NA
UHGV-0104026_11	eggNOG-mapper	871584.D9ZNG4_9CAUD	DNA helicase activity	NA
UHGV-0104026_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0104026_11	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0104026_12	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0104026_12	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0104026_12	UniRef90	UniRef90_A0A7X8JSS1	ATP-binding protein	NA
UHGV-0104026_12	eggNOG-mapper	871584.D9ZNG3_9CAUD	IstB-like ATP binding protein	NA
UHGV-0104026_12	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0104026_12	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0104026_13	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0104026_13	UniRef90	UniRef90_UPI0006B25E60	phage antirepressor KilAC domain-containing protein	NA
UHGV-0104026_13	eggNOG-mapper	658086.HMPREF0994_06321	Phage antirepressor protein KilAC domain	NA
UHGV-0104026_13	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0104026_13	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0104026_13	COG	COG3617	Prophage antirepressor	NA
UHGV-0104026_15	PHROG	phrog_34398	NA	unknown function
UHGV-0104026_16	Structural annotation	PF13411, NF007069, COG3311	NA	NA
UHGV-0104026_17	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0104026_17	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0104026_17	UniRef90	UniRef90_D9ZNF7	Putative helicase	NA
UHGV-0104026_17	eggNOG-mapper	871584.D9ZNF7_9CAUD	helicase activity	NA
UHGV-0104026_17	PADLOC	ZorD1_00003	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0104026_17	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0104026_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0104026_17	Structural annotation	PF00176, PF00271, PF07443, MF_01821, NF041790, TIGR01158, COG0553	NA	NA
UHGV-0104026_19	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0104026_19	PHROG	phrog_3088	amidase	lysis
UHGV-0104026_19	UniRef90	UniRef90_A0A7X9B8R6	SH3 domain-containing protein	NA
UHGV-0104026_19	eggNOG-mapper	1117379.BABA_01345	n-acetylmuramoyl-L-alanine amidase	NA
UHGV-0104026_19	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0104026_19	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0104026_19	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0104026_19	Structural annotation	PF01510, PF18342, NF008758, NF033202, COG5632	NA	NA
UHGV-0104026_20	PHROG	phrog_608	holin	lysis
UHGV-0104026_20	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-0104026_20	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0104026_20	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0104026_22	PHROG	phrog_1382	NA	unknown function
UHGV-0104026_22	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0104026_22	Structural annotation	NF040910	NA	NA
UHGV-0104026_25	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-0104026_25	PHROG	phrog_819	tail protein	tail
UHGV-0104026_25	eggNOG-mapper	411901.BACCAC_01130	COG3209 Rhs family protein	NA
UHGV-0104026_25	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0104026_25	COG	COG4926	Phage-related protein	NA
UHGV-0104026_25	Structural annotation	PF06266, PF13157, PF13229, NF033679	NA	NA
UHGV-0104026_26	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0104026_26	UniRef90	UniRef90_UPI001D1653FC	phage tail protein	NA
UHGV-0104026_26	eggNOG-mapper	1340434.AXVA01000005_gene4864	Prophage endopeptidase tail	NA
UHGV-0104026_26	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0104026_26	COG	COG4926	Phage-related protein	NA
UHGV-0104026_26	Structural annotation	PF14594, PF08239, PF05382, TIGR01665, NF041850, NF033742, COG4926, COG4991, COG0791	NA	NA
UHGV-0104026_27	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0104026_27	UniRef90	UniRef90_UPI001D166F36	phage tail family protein	NA
UHGV-0104026_27	eggNOG-mapper	1499684.CCNP01000020_gene2277	Phage tail protein	NA
UHGV-0104026_27	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0104026_27	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0104026_27	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0104026_27	COG	COG4722	Phage-related protein YomH	NA
UHGV-0104026_27	Structural annotation	PF05709, PF18342, TIGR01633, NF040670, COG4722, COG4991	NA	NA
UHGV-0104026_28	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0104026_28	UniRef90	UniRef90_J4WBN7	Tail tape measure protein, TIGR01760 family	NA
UHGV-0104026_28	eggNOG-mapper	537007.BLAHAN_04244	Phage tail tape measure protein, TP901 family	NA
UHGV-0104026_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0104026_28	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0104026_28	COG	COG5283	Phage-related tail protein	NA
UHGV-0104026_28	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0104026_29	PHROG	phrog_6541	NA	unknown function
UHGV-0104026_30	PHROG	phrog_6280	NA	unknown function
UHGV-0104026_30	UniRef90	UniRef90_UPI001CF35B33	esterase	NA
UHGV-0104026_30	eggNOG-mapper	1304880.JAGB01000002_gene2210	NA	NA
UHGV-0104026_31	PHROG	phrog_6686	tail tube protein	tail
UHGV-0104026_31	UniRef90	UniRef90_E7DNB3	Structural protein	NA
UHGV-0104026_31	eggNOG-mapper	59241.E7DNB3_BPDP1	NA	NA
UHGV-0104026_31	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0104026_32	Structural annotation	PF05657	NA	NA
UHGV-0104026_33	eggNOG-mapper	1443125.Z962_p0058	NA	NA
UHGV-0104026_33	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0104026_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0104026_35	PHROG	phrog_4020	NA	unknown function
UHGV-0104026_35	eggNOG-mapper	1196322.A370_04063	NA	NA
UHGV-0104026_36	PHROG	phrog_29	major head protein	head and packaging
UHGV-0104026_36	UniRef90	UniRef90_UPI001D166481	major capsid protein	NA
UHGV-0104026_36	eggNOG-mapper	59241.E7DNA7_BPDP1	Phage major capsid protein E	NA
UHGV-0104026_36	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0104026_36	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA