UHGV-0104185

Genome information

Genome length 37,844 bps

CDS count 54

Completeness 100.00% (complete)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104185
vOTU ID	vOTU-045482
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_244285
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.95
Jumbo phage	No

Genome content
Genome length	37,844 bps
GC content	38.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.42%
Average CDS length	644.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104185_1	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0104185_1	UniRef90	UniRef90_UPI001F06CCD0	NA	NA
UHGV-0104185_1	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-0104185_1	Pfam	PF14265	NA	DUF4355
UHGV-0104185_1	Structural annotation	PF14265	NA	NA
UHGV-0104185_2	PHROG	phrog_422	major head protein	head and packaging
UHGV-0104185_2	UniRef90	UniRef90_A0A7X5KS43	N4-gp56 family major capsid protein	NA
UHGV-0104185_2	eggNOG-mapper	1352230.S6AVV3_9CAUD	NA	NA
UHGV-0104185_2	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0104185_4	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0104185_4	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0104185_4	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0104185_4	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0104185_4	Structural annotation	PF05135	NA	NA
UHGV-0104185_6	PHROG	phrog_78	tail terminator	connector
UHGV-0104185_6	eggNOG-mapper	1294142.CINTURNW_1695	NA	NA
UHGV-0104185_6	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0104185_7	PHROG	phrog_88	major tail protein	tail
UHGV-0104185_7	UniRef90	UniRef90_R6MJ85	Major tail protein	NA
UHGV-0104185_7	eggNOG-mapper	1295642.H839_15928	NA	NA
UHGV-0104185_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0104185_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0104185_10	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0104185_10	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0104185_10	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-0104185_10	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0104185_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0104185_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0104185_10	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0104185_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0104185_11	UniRef90	UniRef90_R6NBX8	Phage-related protein	NA
UHGV-0104185_11	eggNOG-mapper	86416.Clopa_3365	PFAM Phage tail protein	NA
UHGV-0104185_11	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0104185_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0104185_11	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0104185_12	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0104185_12	UniRef90	UniRef90_R6MM87	Phage minor structural protein	NA
UHGV-0104185_12	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-0104185_12	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0104185_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0104185_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0104185_12	COG	COG4926	Phage-related protein	NA
UHGV-0104185_12	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0104185_13	eggNOG-mapper	1095770.CAHE01000010_gene1063	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0104185_13	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0104185_14	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0104185_14	UniRef90	UniRef90_UPI001F2ED7B7	Abi family protein	NA
UHGV-0104185_14	eggNOG-mapper	469617.FUAG_02687	Abi-like protein	NA
UHGV-0104185_14	PADLOC	AbiD	AbiD	Abi
UHGV-0104185_14	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0104185_14	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0104185_14	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0104185_15	UniRef90	UniRef90_R6MQV2	Tail Collar domain protein	NA
UHGV-0104185_17	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0104185_17	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0104185_18	PHROG	phrog_937	hemolysin	other
UHGV-0104185_19	PHROG	phrog_443	holin	lysis
UHGV-0104185_19	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0104185_19	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0104185_19	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0104185_19	Structural annotation	PF16945	NA	NA
UHGV-0104185_20	PHROG	phrog_774	NA	unknown function
UHGV-0104185_20	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0104185_21	PHROG	phrog_918	NA	unknown function
UHGV-0104185_21	UniRef90	UniRef90_UPI001CCDC3EB	NA	NA
UHGV-0104185_21	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0104185_21	Pfam	PF19791	NA	DUF6275
UHGV-0104185_21	Structural annotation	PF19791	NA	NA
UHGV-0104185_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0104185_22	PHROG	phrog_435	endolysin	lysis
UHGV-0104185_22	UniRef90	UniRef90_A0A1C6E2B1	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0104185_22	eggNOG-mapper	272563.CD630_09720	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0104185_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0104185_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0104185_22	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0104185_23	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0104185_23	PHROG	phrog_2104	NA	unknown function
UHGV-0104185_23	UniRef90	UniRef90_A0A1C6FU84	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0104185_23	eggNOG-mapper	411459.RUMOBE_01706	NA	NA
UHGV-0104185_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0104185_23	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0104185_26	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0104185_26	PHROG	phrog_95	integrase	integration and excision
UHGV-0104185_26	UniRef90	UniRef90_A0A2K9P4Y1	Resolvase domain protein	NA
UHGV-0104185_26	eggNOG-mapper	903814.ELI_1010	Resolvase, N terminal domain	NA
UHGV-0104185_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0104185_26	Pfam	PF07508	Recombinase	Recombinase
UHGV-0104185_26	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0104185_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0104185_26	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0104185_27	UniRef90	UniRef90_UPI001D0C67E8	helix-turn-helix transcriptional regulator	NA
UHGV-0104185_27	eggNOG-mapper	1408823.AXUS01000025_gene2653	NA	NA
UHGV-0104185_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0104185_27	Structural annotation	PF13443, MF_00535, NF007257, COG1396	NA	NA
UHGV-0104185_28	UniRef90	UniRef90_UPI001CBE80FB	helix-turn-helix transcriptional regulator	NA
UHGV-0104185_28	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0104185_28	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0104185_31	Structural annotation	PF13601, NF041230, COG1846	NA	NA
UHGV-0104185_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0104185_35	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0104185_35	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0104185_35	Structural annotation	PF01446	NA	NA
UHGV-0104185_37	KOfam	K03700	recU; recombination protein U	NA
UHGV-0104185_37	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104185_37	UniRef90	UniRef90_A0A4S2H9R9	Holliday junction resolvase RecU	NA
UHGV-0104185_37	eggNOG-mapper	1211817.CCAT010000012_gene2726	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0104185_37	Pfam	PF03838	Recombination protein U	RecU
UHGV-0104185_37	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0104185_37	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0104185_39	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-0104185_39	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0104185_40	Structural annotation	PF13384, COG2771	NA	NA
UHGV-0104185_41	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0104185_41	PHROG	phrog_5696	NA	unknown function
UHGV-0104185_41	UniRef90	UniRef90_R6N7S7	N6_Mtase domain-containing protein	NA
UHGV-0104185_41	eggNOG-mapper	445972.ANACOL_00159	N-6 DNA Methylase	NA
UHGV-0104185_41	PADLOC	MTase_I_00018	Type I methyltransferase	RM
UHGV-0104185_41	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0104185_41	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0104185_41	Structural annotation	COG0286	NA	NA
UHGV-0104185_42	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0104185_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0104185_42	UniRef90	UniRef90_R6NAU0	Integrase	NA
UHGV-0104185_42	eggNOG-mapper	997884.HMPREF1068_04279	Belongs to the 'phage' integrase family	NA
UHGV-0104185_42	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0104185_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0104185_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0104185_42	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0104185_43	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104185_43	UniRef90	UniRef90_A0A4P6YX48	HNH endonuclease	NA
UHGV-0104185_43	eggNOG-mapper	1434319.W5RV07_9CAUD	HNH endonuclease	NA
UHGV-0104185_43	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0104185_43	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0104185_46	PHROG	phrog_419	NA	unknown function
UHGV-0104185_46	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0104185_46	Structural annotation	PF14083	NA	NA
UHGV-0104185_47	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0104185_47	UniRef90	UniRef90_A0A7Z0M6Y8	NA	NA
UHGV-0104185_47	eggNOG-mapper	1235793.C809_01914	sigma factor activity	NA
UHGV-0104185_47	Pfam	PF07374	NA	DUF1492
UHGV-0104185_47	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0104185_47	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0104185_48	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0104185_48	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0104185_48	UniRef90	UniRef90_UPI00148DCDDC	terminase small subunit	NA
UHGV-0104185_48	eggNOG-mapper	1449343.JQLQ01000002_gene1532	Terminase small subunit	NA
UHGV-0104185_48	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0104185_48	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0104185_48	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0104185_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0104185_49	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0104185_49	UniRef90	UniRef90_A0A7X5R6H9	PBSX family phage terminase large subunit	NA
UHGV-0104185_49	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0104185_49	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0104185_49	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0104185_49	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0104185_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0104185_49	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0104185_50	PHROG	phrog_64	portal protein	head and packaging
UHGV-0104185_50	UniRef90	UniRef90_A0A7X5KS83	Phage portal protein	NA
UHGV-0104185_50	eggNOG-mapper	764562.D7RWI5_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0104185_50	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0104185_50	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0104185_50	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0104185_51	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0104185_51	UniRef90	UniRef90_R6M8W5	Phage protein HK97 gp10 family	NA
UHGV-0104185_51	eggNOG-mapper	1123405.AUMM01000017_gene2703	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0104185_51	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0104185_51	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0104185_51	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0104185_52	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0104185_52	UniRef90	UniRef90_A0A316P952	Phage head morphogenesis protein	NA
UHGV-0104185_52	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0104185_52	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0104185_52	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0104185_52	COG	COG2369	NA	NA
UHGV-0104185_52	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0104185_53	Structural annotation	NF041921	NA	NA