UHGV-0104221

Genome information

vOTU vOTU-020208

Genome length 38,830 bps

CDS count 55

Completeness 66.81% (medium-quality)

geNomad score 0.9706

Prediction confidence Confident

Genome information
Genome ID	UHGV-0104221
vOTU ID	vOTU-020208
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245882
BioSample	SAMEA3708775
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	66.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9706
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.64
Jumbo phage	No

Genome content
Genome length	38,830 bps
GC content	49.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.25%
Average CDS length	670.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0104221_2	PHROG	phrog_26448	NA	unknown function
UHGV-0104221_2	eggNOG-mapper	742725.HMPREF9450_00898	NA	NA
UHGV-0104221_2	Pfam	PF20647	NA	DUF6808
UHGV-0104221_2	Structural annotation	PF20647	NA	NA
UHGV-0104221_3	PHROG	phrog_873	endolysin	head and packaging
UHGV-0104221_3	UniRef90	UniRef90_UPI0018982FB2	structural protein P5	NA
UHGV-0104221_3	eggNOG-mapper	742725.HMPREF9450_00897	NA	NA
UHGV-0104221_4	PHROG	phrog_20732	NA	unknown function
UHGV-0104221_4	UniRef90	UniRef90_UPI0003AD759F	phage holin family protein	NA
UHGV-0104221_4	eggNOG-mapper	742725.HMPREF9450_00896	NA	NA
UHGV-0104221_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0104221_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0104221_7	Structural annotation	PF03370	NA	NA
UHGV-0104221_8	eggNOG-mapper	742725.HMPREF9450_02124	NA	NA
UHGV-0104221_10	eggNOG-mapper	742725.HMPREF9450_01065	NA	NA
UHGV-0104221_10	Structural annotation	PF20459	NA	NA
UHGV-0104221_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0104221_11	UniRef90	UniRef90_UPI001CF883FB	phage portal protein	NA
UHGV-0104221_11	eggNOG-mapper	742725.HMPREF9450_01066	Phage portal protein	NA
UHGV-0104221_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0104221_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0104221_11	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0104221_14	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0104221_14	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0104221_14	eggNOG-mapper	742725.HMPREF9450_01068	NA	NA
UHGV-0104221_14	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0104221_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0104221_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0104221_15	UniRef90	UniRef90_A0A379MU54	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0104221_15	eggNOG-mapper	1033732.CAHI01000030_gene1215	Belongs to the peptidase S14 family	NA
UHGV-0104221_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0104221_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0104221_16	PHROG	phrog_5783	NA	unknown function
UHGV-0104221_16	UniRef90	UniRef90_UPI001E2C6287	NYN domain-containing protein	NA
UHGV-0104221_16	eggNOG-mapper	702438.HMPREF9431_02012	NYN domain	NA
UHGV-0104221_16	Pfam	PF01936	NYN domain	NYN
UHGV-0104221_16	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0104221_16	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-0104221_18	eggNOG-mapper	742767.HMPREF9456_03308	NA	NA
UHGV-0104221_19	PHROG	phrog_14295	NA	unknown function
UHGV-0104221_19	eggNOG-mapper	1347393.HG726021_gene437	NA	NA
UHGV-0104221_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0104221_20	Structural annotation	PF21683	NA	NA
UHGV-0104221_21	Structural annotation	PF16774, TIGR01633, COG3499	NA	NA
UHGV-0104221_23	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-0104221_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0104221_27	UniRef90	UniRef90_A0A1Y4AKJ8	Terminase	NA
UHGV-0104221_27	eggNOG-mapper	908612.HMPREF9720_0991	domain protein	NA
UHGV-0104221_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0104221_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0104221_27	COG	COG5410	NA	NA
UHGV-0104221_27	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0104221_28	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0104221_28	UniRef90	UniRef90_A0A563DE01	DNA-packaging protein	NA
UHGV-0104221_28	eggNOG-mapper	1090133.G8EYI7_9CAUD	Pfam:GP3_package	NA
UHGV-0104221_28	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0104221_28	Structural annotation	PF16677	NA	NA
UHGV-0104221_29	eggNOG-mapper	1235803.C825_05321	NA	NA
UHGV-0104221_29	Structural annotation	PF16509, TIGR02985, COG1595	NA	NA
UHGV-0104221_30	eggNOG-mapper	1121100.JCM6294_1073	NA	NA
UHGV-0104221_30	Pfam	PF08299	Bacterial dnaA protein helix-turn-helix	Bac_DnaA_C
UHGV-0104221_30	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0104221_30	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0104221_31	UniRef90	UniRef90_UPI00191FB118	retroviral-like aspartic protease family protein	NA
UHGV-0104221_31	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-0104221_31	COG	COG3577	Predicted aspartyl protease	NA
UHGV-0104221_36	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0104221_36	PHROG	phrog_5696	NA	unknown function
UHGV-0104221_36	UniRef90	UniRef90_A0A515J086	N-6 DNA methylase	NA
UHGV-0104221_36	eggNOG-mapper	470145.BACCOP_01633	type I restriction enzyme	NA
UHGV-0104221_36	PADLOC	MTase_I_00010	Type I methyltransferase	RM
UHGV-0104221_36	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0104221_36	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0104221_36	Structural annotation	PF13679, MF_02126, TIGR00497, COG0286	NA	NA
UHGV-0104221_37	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0104221_37	UniRef90	UniRef90_UPI001896B453	NA	NA
UHGV-0104221_37	eggNOG-mapper	1243664.CAVL020000020_gene3193	NA	NA
UHGV-0104221_37	Pfam	PF06356	NA	DUF1064
UHGV-0104221_37	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0104221_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0104221_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0104221_40	UniRef90	UniRef90_A0A316PKQ3	Replicative DNA helicase	NA
UHGV-0104221_40	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-0104221_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0104221_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0104221_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0104221_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0104221_41	PHROG	phrog_15768	NA	unknown function
UHGV-0104221_41	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-0104221_41	eggNOG-mapper	411477.PARMER_02072	DnaD domain protein	NA
UHGV-0104221_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0104221_41	Structural annotation	PF08222, NF033788, COG0640	NA	NA
UHGV-0104221_43	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0104221_43	eggNOG-mapper	888059.HMPREF9071_2106	NA	NA
UHGV-0104221_43	Structural annotation	PF21662, NF038178	NA	NA
UHGV-0104221_44	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104221_44	UniRef90	UniRef90_A0A316PEM7	PDDEXK_1 domain-containing protein	NA
UHGV-0104221_44	eggNOG-mapper	313596.RB2501_01430	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0104221_44	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0104221_44	COG	COG2887	RecB family exonuclease	NA
UHGV-0104221_45	eggNOG-mapper	1122605.KB893643_gene671	NA	NA
UHGV-0104221_48	PHROG	phrog_5070	NA	unknown function
UHGV-0104221_48	UniRef90	UniRef90_UPI001032F014	polymer-forming cytoskeletal protein	NA
UHGV-0104221_48	eggNOG-mapper	762982.HMPREF9442_00534	NA	NA
UHGV-0104221_48	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0104221_51	PHROG	phrog_11227	protease	other
UHGV-0104221_51	UniRef90	UniRef90_A0A841MSP4	Regulator of protease activity HflC (Stomatin/prohibitin superfamily)	NA
UHGV-0104221_51	eggNOG-mapper	742725.HMPREF9450_02070	NA	NA
UHGV-0104221_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0104221_54	UniRef90	UniRef90_G5H733	HTH cro/C1-type domain-containing protein	NA
UHGV-0104221_54	eggNOG-mapper	742725.HMPREF9450_00876	Transcriptional regulator	NA
UHGV-0104221_54	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0104221_54	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0104221_54	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0104221_55	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0104221_55	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0104221_55	UniRef90	UniRef90_UPI000E4E038E	type I restriction endonuclease	NA
UHGV-0104221_55	eggNOG-mapper	471854.Dfer_3124	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0104221_55	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0104221_55	COG	COG4748	NA	NA
UHGV-0104221_55	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA